SRGN (serglycin) - Rat Genome Database

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Gene: SRGN (serglycin) Pan paniscus
Analyze
Symbol: SRGN
Name: serglycin
RGD ID: 11669241
Description: ENCODES a protein that exhibits collagen binding (ortholog); INVOLVED IN granzyme-mediated programmed cell death signaling pathway (inferred); maintenance of granzyme B location in T cell secretory granule (inferred); maintenance of protease location in mast cell secretory granule (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN glutamatergic synapse (ortholog); Golgi membrane (ortholog); postsynaptic specialization, intracellular component (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2881,234,083 - 81,251,316 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11081,239,404 - 81,256,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,554,873 - 65,572,108 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,089,349 - 68,106,261 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,089,392 - 68,106,250 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SRGN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2881,234,083 - 81,251,316 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11081,239,404 - 81,256,637 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01065,554,873 - 65,572,108 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11068,089,349 - 68,106,261 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1068,089,392 - 68,106,250 (+)Ensemblpanpan1.1panPan2
SRGN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381069,087,603 - 69,104,811 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1069,088,103 - 69,104,805 (+)EnsemblGRCh38hg38GRCh38
GRCh371070,847,359 - 70,864,567 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361070,517,834 - 70,534,573 (+)NCBINCBI36Build 36hg18NCBI36
Build 341070,517,833 - 70,534,571NCBI
Celera1064,123,664 - 64,140,417 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1064,847,942 - 64,864,694 (+)NCBIHuRef
CHM1_11071,129,576 - 71,146,327 (+)NCBICHM1_1
T2T-CHM13v2.01069,925,937 - 69,973,238 (+)NCBIT2T-CHM13v2.0
Srgn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,329,612 - 62,363,224 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,329,612 - 62,363,230 (-)EnsemblGRCm39 Ensembl
GRCm381062,493,833 - 62,527,445 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1062,493,833 - 62,527,451 (-)EnsemblGRCm38mm10GRCm38
MGSCv371061,957,176 - 61,970,503 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361061,889,785 - 61,903,112 (-)NCBIMGSCv36mm8
Celera1063,596,893 - 63,610,808 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.42NCBI
Srgn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82030,985,508 - 31,022,296 (-)NCBIGRCr8
mRatBN7.22030,442,810 - 30,479,549 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2030,442,813 - 30,457,406 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2031,453,724 - 31,468,322 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02030,844,629 - 30,859,227 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02031,581,369 - 31,595,957 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02032,120,317 - 32,158,071 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2032,120,320 - 32,139,789 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02033,908,571 - 33,942,620 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42029,746,729 - 29,761,072 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12029,760,531 - 29,774,872 (-)NCBI
Celera2031,862,885 - 31,877,472 (-)NCBICelera
Cytogenetic Map20q11NCBI
Srgn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543721,951,732 - 21,965,581 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543721,954,837 - 21,966,552 (-)NCBIChiLan1.0ChiLan1.0
SRGN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1420,230,713 - 20,244,952 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl420,230,743 - 20,244,474 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha420,360,979 - 20,375,208 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0420,503,127 - 20,517,366 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl420,503,157 - 20,517,696 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1420,403,602 - 20,418,003 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0420,606,545 - 20,620,968 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,949,982 - 20,964,223 (+)NCBIUU_Cfam_GSD_1.0
Srgn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721360,826,392 - 60,839,986 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365219,319,114 - 9,332,655 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SRGN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1472,183,363 - 72,199,250 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11472,183,368 - 72,199,262 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21478,197,805 - 78,215,931 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SRGN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1962,217,836 - 62,235,110 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl962,217,525 - 62,235,238 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604822,958,463 - 22,975,756 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Srgn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247543,401,480 - 3,411,488 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247543,379,651 - 3,412,175 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000031753   ⟹   ENSPPAP00000009113
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1068,089,392 - 68,106,250 (+)Ensembl
RefSeq Acc Id: XM_003815917   ⟹   XP_003815965
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2881,234,083 - 81,251,316 (+)NCBI
NHGRI_mPanPan11081,239,404 - 81,256,637 (+)NCBI
Mhudiblu_PPA_v01065,554,873 - 65,572,108 (+)NCBI
PanPan1.11068,089,349 - 68,106,261 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024930234   ⟹   XP_024786002
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2881,234,659 - 81,251,316 (+)NCBI
NHGRI_mPanPan11081,239,980 - 81,256,637 (+)NCBI
Mhudiblu_PPA_v01065,555,443 - 65,572,108 (+)NCBI
PanPan1.11068,089,494 - 68,106,258 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003815965 (Get FASTA)   NCBI Sequence Viewer  
  XP_024786002 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000009113.1
RefSeq Acc Id: XP_003815965   ⟸   XM_003815917
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024786002   ⟸   XM_024930234
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000009113   ⟸   ENSPPAT00000031753


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027779 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031753.1 UniProtKB/TrEMBL
InterPro Serglycin UniProtKB/TrEMBL
KEGG Report pps:100967892 UniProtKB/TrEMBL
NCBI Gene SRGN ENTREZGENE
PANTHER SECRETORY GRANULE PROTEOGLYCAN CORE PROTEIN UniProtKB/TrEMBL
  SERGLYCIN UniProtKB/TrEMBL
Pfam Serglycin UniProtKB/TrEMBL
UniProt A0A2R9A1I9_PANPA UniProtKB/TrEMBL