CYLC2 (cylicin 2) - Rat Genome Database

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Gene: CYLC2 (cylicin 2) Pan paniscus
Analyze
Symbol: CYLC2
Name: cylicin 2
RGD ID: 11667972
Description: ENCODES a protein that exhibits structural constituent of cytoskeleton (inferred); INVOLVED IN cytoskeleton organization (inferred); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cylicin-2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21136,354,818 - 36,385,530 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1936,357,189 - 36,387,901 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0974,188,934 - 74,208,842 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19102,181,250 - 102,192,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9102,181,202 - 102,192,296 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CYLC2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21136,354,818 - 36,385,530 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1936,357,189 - 36,387,901 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0974,188,934 - 74,208,842 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19102,181,250 - 102,192,116 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9102,181,202 - 102,192,296 (+)Ensemblpanpan1.1panPan2
CYLC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389102,995,333 - 103,018,488 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9102,995,311 - 103,018,488 (+)EnsemblGRCh38hg38GRCh38
GRCh379105,757,615 - 105,780,770 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369104,797,484 - 104,820,591 (+)NCBINCBI36Build 36hg18NCBI36
Build 349102,837,217 - 102,860,325NCBI
Celera976,262,286 - 76,285,463 (+)NCBICelera
Cytogenetic Map9q31.1NCBI
HuRef975,360,527 - 75,383,535 (+)NCBIHuRef
CHM1_19105,903,882 - 105,926,749 (+)NCBICHM1_1
T2T-CHM13v2.09115,169,180 - 115,192,167 (+)NCBIT2T-CHM13v2.0
Cylc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39451,216,653 - 51,250,625 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl451,216,678 - 51,250,622 (+)EnsemblGRCm39 Ensembl
GRCm38451,216,653 - 51,250,625 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl451,216,678 - 51,250,622 (+)EnsemblGRCm38mm10GRCm38
MGSCv37451,229,550 - 51,242,800 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera451,211,964 - 51,224,876 (+)NCBICelera
Cytogenetic Map4B1NCBI
cM Map427.27NCBI
Cylc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8570,349,791 - 70,384,673 (+)NCBIGRCr8
mRatBN7.2565,554,320 - 65,576,251 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl565,554,309 - 65,589,282 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0566,292,607 - 66,327,552 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl566,313,815 - 66,322,567 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0570,775,650 - 70,797,496 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4568,005,845 - 68,020,150 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera562,045,909 - 62,080,776 (-)NCBICelera
Cytogenetic Map5q23NCBI
Cylc2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541923,183,700 - 23,218,555 (-)NCBIChiLan1.0ChiLan1.0
CYLC2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11159,233,054 - 59,246,414 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1159,233,061 - 59,246,019 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1157,696,069 - 57,709,068 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01160,366,861 - 60,379,945 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11158,889,068 - 58,902,407 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01158,906,695 - 58,919,908 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01159,592,662 - 59,605,948 (+)NCBIUU_Cfam_GSD_1.0
Cylc2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947174,325,561 - 174,329,182 (+)NCBIHiC_Itri_2
CYLC2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1244,397,970 - 244,400,960 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11244,390,956 - 244,410,654 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21273,247,616 - 273,371,455 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CYLC2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11236,431,626 - 36,453,256 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1236,441,890 - 36,446,007 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660356,126,745 - 6,137,457 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cylc2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247588,423,179 - 8,454,340 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSPPAT00000017602   ⟹   ENSPPAP00000003813
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl9102,181,202 - 102,192,296 (+)Ensembl
RefSeq Acc Id: XM_055117793   ⟹   XP_054973768
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21136,369,084 - 36,385,530 (-)NCBI
NHGRI_mPanPan1936,371,455 - 36,387,901 (-)NCBI
RefSeq Acc Id: XR_008626661
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21136,354,818 - 36,385,530 (-)NCBI
NHGRI_mPanPan1936,357,189 - 36,387,901 (-)NCBI
RefSeq Acc Id: XR_008626662
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21136,360,570 - 36,385,530 (-)NCBI
NHGRI_mPanPan1936,362,941 - 36,387,901 (-)NCBI
Protein Sequences
Protein RefSeqs XP_054973768 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003813.1
RefSeq Acc Id: ENSPPAP00000003813   ⟸   ENSPPAT00000017602
RefSeq Acc Id: XP_054973768   ⟸   XM_055117793
- UniProtKB: A0A2R8ZFM3 (UniProtKB/TrEMBL)
Protein Domains
Cylicin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000016079 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000017602.1 UniProtKB/TrEMBL
InterPro CYLC UniProtKB/TrEMBL
  Cylicin_N UniProtKB/TrEMBL
KEGG Report pps:100967453 UniProtKB/TrEMBL
NCBI Gene CYLC2 ENTREZGENE
PANTHER CYLICIN-2 UniProtKB/TrEMBL
  PTHR16742 UniProtKB/TrEMBL
Pfam Cylicin_N UniProtKB/TrEMBL
UniProt A0A2R8ZFM3 ENTREZGENE, UniProtKB/TrEMBL