Tcstv2b (2 cell stage variable group member 2B) - Rat Genome Database

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Gene: Tcstv2b (2 cell stage variable group member 2B) Mus musculus
Analyze
Symbol: Tcstv2b (Ensembl: Gm21761)
Name: 2 cell stage variable group member 2B (Ensembl:predicted gene, 21761)
RGD ID: 11576872
MGI Page MGI
Description:
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2-cell-stage, variable group-like; Gm21761
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913120,373,571 - 120,375,004 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13120,373,631 - 120,390,808 (-)EnsemblGRCm39 Ensembl
GRCm3813119,912,035 - 119,913,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13119,912,095 - 119,929,272 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map13D2.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:108
Interacting mature miRNAs:110
Transcripts:ENSMUST00000179502
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14700691Cisaq1_mcoxsackieviral infection serum ALT QTL 1 (mouse)1386148119120461536Mouse
1300939Hrtfm6_mheart failure modifier 6 (mouse)Not determined1391383692120883175Mouse
1300876Tanidd2_mtally ho associated non-insulin dependednt diabetes mellitus 2 (mouse)Not determined1391965303120883175Mouse
1301142Heal2_mwound healing/regeneration 2 (mouse)Not determined1393875267120883175Mouse
4142338Skmw18_mskeletal muscle weight 18 (mouse)Not determined1394528399120883175Mouse
1558763Gct9_mgranulosa cell tumorigenesis 9 (mouse)Not determined1395036824120883175Mouse
1357468Rplag_mreduced platelet aggregation (mouse)Not determined1395502130120883175Mouse
14746974Manh75_mmandible shape 75 (mouse)1399386647120883175Mouse
12879496Fexq2_mfear expression QTL 2 (mouse)13100741519120883175Mouse
4142400Tgq24_mtriglyceride QTL 24 (mouse)Not determined102602630120883175Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001310632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC231112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000179502   ⟹   ENSMUSP00000136787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13120,373,773 - 120,374,288 (-)Ensembl
GRCm38.p6 Ensembl13119,912,237 - 119,912,752 (-)Ensembl
RefSeq Acc Id: ENSMUST00000187530   ⟹   ENSMUSP00000141043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl13120,373,631 - 120,390,808 (-)Ensembl
GRCm38.p6 Ensembl13119,912,095 - 119,929,272 (-)Ensembl
RefSeq Acc Id: NM_001310632   ⟹   NP_001297561
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3913120,373,571 - 120,375,004 (-)NCBI
GRCm3813119,912,035 - 119,913,468 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001297561 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000136787.2
  ENSMUSP00000141043
  ENSMUSP00000141043.2
Reference Protein Sequences
RefSeq Acc Id: NP_001297561   ⟸   NM_001310632
- UniProtKB: J3QK00 (UniProtKB/TrEMBL),   Q3USZ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000136787   ⟸   ENSMUST00000179502
RefSeq Acc Id: ENSMUSP00000141043   ⟸   ENSMUST00000187530

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-J3QK00-F1-model_v2 AlphaFold J3QK00 1-171 view protein structure

Promoters
RGD ID:8681416
Promoter ID:EPDNEW_M18738
Type:single initiation site
Name:Gm21761_1
Description:Mus musculus predicted gene, 21761 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3813119,913,496 - 119,913,556EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000096175 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000179502.2 UniProtKB/TrEMBL
  ENSMUST00000187530 ENTREZGENE
  ENSMUST00000187530.3 UniProtKB/TrEMBL
InterPro DUF1438 UniProtKB/TrEMBL
KEGG Report mmu:106029237 UniProtKB/TrEMBL
MGD MGI:5433925 ENTREZGENE
NCBI Gene Gm21761 ENTREZGENE
PANTHER 2-CELL-STAGE, VARIABLE GROUP, MEMBER 1-RELATED UniProtKB/TrEMBL
  PTHR31647 UniProtKB/TrEMBL
Pfam DUF1438 UniProtKB/TrEMBL
PhenoGen Tcstv2b PhenoGen
UniProt J3QK00 ENTREZGENE, UniProtKB/TrEMBL
  Q3USZ4 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-23 Tcstv2b  2 cell stage variable group member 2B  Gm21761  predicted gene, 21761  Symbol and/or name updated 27372883 PROVISIONAL
2023-10-18 Gm21761  predicted gene, 21761  Tcstv2b  predicted gene, 21761  Symbol and/or name change 5135510 APPROVED
2023-10-10 Tcstv2b  predicted gene, 21761  Gm21761  predicted gene, 21761  Symbol and/or name change 5135510 APPROVED