Gm11750 (predicted gene 11750) - Rat Genome Database

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Gene: Gm11750 (predicted gene 11750) Mus musculus
Analyze
Symbol: Gm11750
Name: predicted gene 11750
RGD ID: 11576740
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911118,676,238 - 118,697,735 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11118,682,198 - 118,684,654 (+)EnsemblGRCm39 Ensembl
GRCm3811118,785,412 - 118,793,704 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11118,791,372 - 118,793,828 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11E2NCBI
cM Map1183.31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Gm11750
738 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:234
Count of miRNA genes:219
Interacting mature miRNAs:229
Transcripts:ENSMUST00000146016
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000146016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11118,682,198 - 118,684,654 (+)Ensembl
GRCm38.p6 Ensembl11118,791,372 - 118,793,828 (+)Ensembl
RefSeq Acc Id: XR_001780384
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,676,238 - 118,684,774 (+)NCBI
GRCm3811118,785,412 - 118,793,593 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780385
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,676,238 - 118,697,735 (+)NCBI
GRCm3811118,785,412 - 118,793,704 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001780386
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911118,683,000 - 118,697,735 (+)NCBI
GRCm3811118,792,174 - 118,793,704 (+)NCBI
Sequence:
Promoters
RGD ID:15094026
Promoter ID:EPDNEWNC_M1945
Type:single initiation site
Name:Gm11750_1
Description:predicted gene 11750 [Source:MGI Symbol;Acc:MGI:3650640]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811118,791,389 - 118,791,449EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000085059 Ensembl
MGD MGI:3650640 ENTREZGENE
NCBI Gene Gm11750 ENTREZGENE
PhenoGen Gm11750 PhenoGen