Gene: LINC01978 (long intergenic non-protein coding RNA 1978) Homo sapiens
Analyze
Symbol:
LINC01978
Name:
long intergenic non-protein coding RNA 1978
RGD ID:
11570579
HGNC Page
HGNC:52806
Description:
Type:
ncrna (Ensembl: lncRNA)
RefSeq Status:
VALIDATED
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 17 79,919,357 - 79,924,010 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 17 79,919,310 - 79,926,018 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 17 77,893,156 - 77,897,809 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 17 q25.3 NCBI HuRef 17 73,333,743 - 73,338,396 (+) NCBI HuRef CHM1_1 17 77,979,190 - 77,983,843 (+) NCBI CHM1_1 T2T-CHM13v2.0 17 80,817,080 - 80,821,739 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Additional References at PubMed
Genomics
miRNA Target Status
Predicted Target Of
Count of predictions: 644 Count of miRNA genes: 494 Interacting mature miRNAs: 562 Transcripts: ENST00000572353, ENST00000574526 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
Sequence
RefSeq Acc Id:
ENST00000572353
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 17 79,919,374 - 79,925,462 (+) Ensembl
RefSeq Acc Id:
ENST00000574526
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 17 79,919,357 - 79,924,010 (+) Ensembl
RefSeq Acc Id:
ENST00000655170
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 17 79,919,310 - 79,926,018 (+) Ensembl
RefSeq Acc Id:
NR_110851
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 17 79,919,357 - 79,924,010 (+) NCBI CHM1_1 17 77,979,190 - 77,983,843 (+) NCBI T2T-CHM13v2.0 17 80,817,080 - 80,821,739 (+) NCBI
Sequence:
GCCGAGCCCAGGCCTGCACCCTAGGCAGGCACTGCTCCGTGATCCAGGAACCACCTCTCTCTAC AGCTGGGAGTGAGCAGTCAGAGAGGGAGACAGCCTTGCCCGGTGCTACCCAGCAAGCTAGTCAC CGAGTGGGCAGAGGGAGGAGCGGCCCTCACCGGATGTCAAGCAGCCTGGGTCCCCAGTCCAGCT CTGCCTGTCCCTCGCAATAACGCCTCAGATGGGGAAACTGAAGCCCAATGTCACGGAGGTAGGA AGGGGCAGACGTAGACTTGGAAGGATTCTGTGGCCTGTTCGAGGTTCCGTGCATGAGCCGTGCT CCGTGGAGAGCCAGGTCTACCGTTCCAGCCTTTGCTCTCCCAGGCCCCTGGCTGTCCATGTCCC ACACCACCCTGACACCTGATACTTGACACCCGTGTCACCAACAGCTACAGTGCACCACGGCCTT GGAACACCGCACTCAGTGCTCTGCCTGGATGAGCCCTGTACCCCCATGACGACCCCACTGTGGA CATTCTTATGTCCATTTTACAGATGACGAAACTGAGACGGGCGGATGCAGTGTTGTGCACAAGC CACACAGCTGGAAACGTGGGCTGGGGACTGGAACCCAATTACCCGCTTTGGCTCTATAATCCTC TTTTTATTTTTATTTAATTTTTTTATGAGATGGAGTGTAGCTCTGTCGCACAGGCTGGAGTGCA GTGACACGATCTCAGCTCACTGTAACCTCTGCCTCTCGGGTTCAACCCATTCTTGTGTCTCAGC CTCCCAAGAAGCTGGGATTACAGTTGTGTGTCACCACGCCTGGCTAATTTTTTGTATTTTTAGT AGAGATGGGGTTTCCCCATGTTGGTCAGGCTGGTCTCGGACTCCTGACCTCAGGTGATCTGCCC ACCTCTACCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCCGGCCCTTTAATCCTC TTTTTAAAACACCTTAGGATATGATATATCCAGAATAGGCAAATCCATAGACACAGAATGCAGA TCCGTGTGCCAGTGGCTAGGGGGTGAAGAGGAACTGCTGAATGAGCGGGCGTTTCCTCCTGGGG TGACCAGCATGTTCTGCGACTGCAGATGATGGCTGTGCCACCTTGTGAGGGTACTAAATGCCGC CGAATGGTACACCTTAAACTGGTTGATTTTATGTTATATGAACTTCCCTTCCATACATTATTTG AGGCTGGGCACGGTGGCTCACACCTGTTATCCCAACACTTTTGGAGGCCGAGATGGGTGGATCA TCTGAGGTCAGGAGTTTGAGACCAGCCTGACCAAAATGGTGAAACCCCGTCTCTACTAAAAATA CAAAAAAATTAGCTGGGTGTGGTGGCGCATGCCTGTAATCCCAGCTACTCAGGAGGCTGAGGCA GGATAATCGCTTGAATCCGGGAGGCAGAGATTGCAGTGGGCCTAGATCGTGCCATTGTACTCCT GCCTAGGTGACAGAGCAAGACTCCGCCTCAAAAATAAAAAATAAAAAATAAATTATTTGGAAAA AAAA
hide sequence
Promoters
RGD ID: 15097093
Promoter ID: EPDNEWNC_H1935
Type: initiation region
Name: LINC01978_1
Description: long intergenic non-protein coding RNA 1978 [Source:HGNCSymbol;Acc:HGNC:52806]
SO ACC ID: SO:0000170
Source: EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/ )
Experiment Methods: Single-end sequencing.; Paired-end sequencing.
Position: Human Assembly Chr Position (strand) Source GRCh38 17 79,919,374 - 79,919,434 EPDNEWNC
Additional Information