LINC01718 (long intergenic non-protein coding RNA 1718) - Rat Genome Database

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Gene: LINC01718 (long intergenic non-protein coding RNA 1718) Homo sapiens
Analyze
Symbol: LINC01718
Name: long intergenic non-protein coding RNA 1718
RGD ID: 11562377
HGNC Page HGNC:52505
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382061,079,064 - 61,080,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2061,079,049 - 61,083,750 (+)EnsemblGRCh38hg38GRCh38
GRCh372059,654,120 - 59,655,235 (+)NCBIGRCh37GRCh37hg19GRCh37
Celera2056,394,065 - 56,395,124 (+)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2056,441,185 - 56,442,300 (+)NCBIHuRef
CHM1_12059,555,290 - 59,556,373 (+)NCBICHM1_1
T2T-CHM13v2.02062,863,273 - 62,864,388 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 20q13.32-13.33(chr20:59041966-64277321)x3 copy number gain See cases [RCV000135805] Chr20:59041966..64277321 [GRCh38]
Chr20:57617021..62908674 [GRCh37]
Chr20:57050416..62379118 [NCBI36]
Chr20:20q13.32-13.33		 pathogenic
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33		 pathogenic
GRCh38/hg38 20q13.2-13.33(chr20:56198032-64277321)x3 copy number gain See cases [RCV000138035] Chr20:56198032..64277321 [GRCh38]
Chr20:54773088..62908674 [GRCh37]
Chr20:54206495..62379118 [NCBI36]
Chr20:20q13.2-13.33		 pathogenic
GRCh38/hg38 20q13.2-13.33(chr20:53236165-64284202)x3 copy number gain See cases [RCV000143584] Chr20:53236165..64284202 [GRCh38]
Chr20:51852704..62915555 [GRCh37]
Chr20:51286111..62385999 [NCBI36]
Chr20:20q13.2-13.33		 likely pathogenic
GRCh38/hg38 20q13.31-13.33(chr20:57229415-64273089)x3 copy number gain See cases [RCV000141347] Chr20:57229415..64273089 [GRCh38]
Chr20:55804471..62904442 [GRCh37]
Chr20:55237878..62374886 [NCBI36]
Chr20:20q13.31-13.33		 pathogenic
GRCh38/hg38 20q13.12-13.33(chr20:44787704-64277321)x3 copy number gain See cases [RCV000053035] Chr20:44787704..64277321 [GRCh38]
Chr20:43416345..62908674 [GRCh37]
Chr20:42849759..62379118 [NCBI36]
Chr20:20q13.12-13.33		 pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:51
Interacting mature miRNAs:51
Transcripts:ENST00000441660
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 294
Low 1 1 3 1 2 2 78 4 1 1
Below cutoff 28 19 25 4 9 3 39 20 50 3 15 19 1 15 20

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000441660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2061,079,140 - 61,080,179 (+)Ensembl
RefSeq Acc Id: ENST00000664708
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2061,079,049 - 61,083,750 (+)Ensembl
RefSeq Acc Id: NR_109919
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382061,079,064 - 61,080,179 (+)NCBI
CHM1_12059,555,258 - 59,556,373 (+)NCBI
T2T-CHM13v2.02062,863,273 - 62,864,388 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC LINC01718 COSMIC
Ensembl Genes ENSG00000229606 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000441660 ENTREZGENE
GTEx ENSG00000229606 GTEx
HGNC ID HGNC:52505 ENTREZGENE
Human Proteome Map LINC01718 Human Proteome Map
NCBI Gene LINC01718 ENTREZGENE
RNAcentral URS000075BFD7 RNACentral