LOC108350588 (60S ribosomal protein L23-like) - Rat Genome Database

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Gene: LOC108350588 (60S ribosomal protein L23-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC108350588
Name: 60S ribosomal protein L23-like
RGD ID: 11504759
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of ribonucleoprotein complex.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07051240.1; large ribosomal subunit protein uL14-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,394,526 - 28,405,307 (+)NCBIGRCr8
mRatBN7.238,001,209 - 8,002,446 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,001,626 - 8,002,130 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.032,404,852 - 2,405,958 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,405,269 - 2,405,691 (+)NCBIRnor6.0rn6Rnor6.0
Celera32,828,135 - 2,829,241 (+)NCBICelera
Cytogenetic Map3p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in LOC108350588
2 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70202Alc19Alcohol consumption QTL 192.5drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)3127494778Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3131158234Rat
631831Alc8Alcohol consumption QTL 82.7consumption behavior trait (VT:0002069)calculated ethanol drink intake rate (CMO:0001615)3133230976Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)diastolic blood pressure (CMO:0000005)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)3133278763Rat
61468Bp15Blood pressure QTL 154.4blood pressure trait (VT:0000183)pulse pressure (CMO:0000292)3133278763Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3133278763Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)3136847613Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)3138710544Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3139874793Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)3191609953Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3653764510778823Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000032589   ⟹   ENSRNOP00000076508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl38,001,626 - 8,002,130 (+)Ensembl
RefSeq Acc Id: XM_063284810   ⟹   XP_063140880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8328,394,526 - 28,405,307 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063140880 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000076508.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000076508   ⟸   ENSRNOT00000032589
RefSeq Acc Id: XP_063140880   ⟸   XM_063284810

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50483 BioCyc
Ensembl Genes ENSRNOG00000024412 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000032589.5 UniProtKB/TrEMBL
Gene3D-CATH 2.40.150.20 UniProtKB/TrEMBL
InterPro Ribosomal_L14_sf UniProtKB/TrEMBL
  Ribosomal_L14P UniProtKB/TrEMBL
NCBI Gene LOC108350588 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L23 UniProtKB/TrEMBL
  PTHR11761 UniProtKB/TrEMBL
Pfam Ribosomal_L14 UniProtKB/TrEMBL
PhenoGen LOC108350588 PhenoGen
RatGTEx ENSRNOG00000024412 RatGTEx
SMART Ribosomal_L14 UniProtKB/TrEMBL
Superfamily-SCOP SSF50193 UniProtKB/TrEMBL
UniProt A0A8I5Y4M0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC108350588  60S ribosomal protein L23-like  AABR07051240.1    Data merged from RGD:15003587 737654 PROVISIONAL
2019-11-08 AABR07051240.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108350588  60S ribosomal protein L23-like      Symbol and Name status set to provisional 70820 PROVISIONAL