LOC108352818 (uncharacterized LOC108352818) - Rat Genome Database

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Gene: LOC108352818 (uncharacterized LOC108352818) Rattus norvegicus
Analyze
Symbol: LOC108352818
Name: uncharacterized LOC108352818
RGD ID: 11472970
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814106,207,393 - 106,238,068 (+)NCBIGRCr8
mRatBN7.214102,006,290 - 102,037,032 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl14101,984,381 - 102,037,068 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.014112,588,939 - 112,626,412 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14112,595,958 - 112,626,412 (+)EnsemblRnor6.0rn6Rnor6.0
Celera14100,900,668 - 100,937,999 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC108352818
238 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium
Low 2 2 1 5
Below cutoff 4 11 1 7 1 2 2 7 4 8 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000080488
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl14102,016,828 - 102,035,971 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000081421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl14101,984,381 - 102,037,068 (+)Ensembl
Rnor_6.0 Ensembl14112,595,958 - 112,626,412 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl14102,016,828 - 102,035,971 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl14101,984,381 - 102,037,068 (+)Ensembl
RefSeq Acc Id: XR_005493510
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814106,207,393 - 106,238,068 (+)NCBI
mRatBN7.214102,006,290 - 102,037,032 (+)NCBI
RefSeq Acc Id: XR_005493511
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814106,207,395 - 106,238,068 (+)NCBI
mRatBN7.214102,006,292 - 102,037,032 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14709 BioCyc
Ensembl Genes ENSRNOG00000056561 Ensembl
NCBI Gene LOC108352818 ENTREZGENE
PhenoGen LOC108352818 PhenoGen
RatGTEx ENSRNOG00000056561 RatGTEx
RNAcentral URS0000CD00E9 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108352818  uncharacterized LOC108352818      Symbol and Name status set to provisional 70820 PROVISIONAL