LOC108349085 (uncharacterized LOC108349085) - Rat Genome Database

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Gene: LOC108349085 (uncharacterized LOC108349085) Rattus norvegicus
Analyze
Symbol: LOC108349085
Name: uncharacterized LOC108349085
RGD ID: 11453714
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82045,176,857 - 45,190,599 (+)NCBIGRCr8
mRatBN7.22043,622,460 - 43,633,675 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.02045,313,334 - 45,325,227 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Celera2044,328,740 - 44,340,587 (+)NCBICelera
Cytogenetic Map20q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in LOC108349085
139 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411652Foco24Food consumption QTL 240.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)201175751554435887Rat
1331747Hrtrt16Heart rate QTL 163.163heart pumping trait (VT:2000009)heart rate (CMO:0000002)202520973454435887Rat
9590092Insglur9Insulin/glucose ratio QTL 918.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)201175751554435887Rat
1598816Memor12Memory QTL 122.4exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)20260683647606836Rat
1598869Memor6Memory QTL 63.1exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)202924438854435887Rat
70158Bp60Blood pressure QTL 603arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)203161428444396023Rat
2303578Gluco50Glucose level QTL 502blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)202510672254435887Rat
2303626Vencon10Ventilatory control QTL 100.001respiration trait (VT:0001943)respiration rate (CMO:0000289)201919072154435887Rat
2305926Iddm37Insulin dependent diabetes mellitus QTL 376blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)20152784246527842Rat
2317880Alcrsp25Alcohol response QTL 252.3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)201769755054435887Rat
4889610Pancm3Pancreatic morphology QTL 33.750.001pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)201761783247606836Rat
2303587Bw93Body weight QTL 9313body mass (VT:0001259)body weight (CMO:0000012)202510672254435887Rat
1641915Colcr9Colorectal carcinoma resistance QTL 92.970.0024intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)20153065546530655Rat
2300188Bmd68Bone mineral density QTL 686.40.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)202510672254435887Rat


Expression


Sequence


RefSeq Acc Id: XR_001842496
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,176,869 - 45,188,814 (+)NCBI
mRatBN7.22043,622,460 - 43,633,675 (+)NCBI
Rnor_6.02045,313,334 - 45,325,227 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005497818
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,176,869 - 45,190,599 (+)NCBI
mRatBN7.22043,622,462 - 43,633,675 (+)NCBI
RefSeq Acc Id: XR_005497819
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,176,919 - 45,188,814 (+)NCBI
mRatBN7.22043,622,478 - 43,633,675 (+)NCBI
RefSeq Acc Id: XR_005497820
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,176,919 - 45,188,814 (+)NCBI
mRatBN7.22043,622,478 - 43,633,675 (+)NCBI
RefSeq Acc Id: XR_005497821
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,176,919 - 45,188,814 (+)NCBI
mRatBN7.22043,622,478 - 43,633,675 (+)NCBI
RefSeq Acc Id: XR_005497822
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,176,919 - 45,188,814 (+)NCBI
mRatBN7.22043,622,478 - 43,633,675 (+)NCBI
RefSeq Acc Id: XR_010060892
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82045,176,857 - 45,188,814 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-3439 BioCyc
NCBI Gene LOC108349085 ENTREZGENE
PhenoGen LOC108349085 PhenoGen
RNAcentral URS0000CCE3C0 RNACentral
  URS0000CCEC4A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108349085  uncharacterized LOC108349085      Symbol and Name status set to provisional 70820 PROVISIONAL