Gene: LOC108349085 (uncharacterized LOC108349085) Rattus norvegicus |
|
Analyze |
|
Symbol: |
LOC108349085 |
Name: |
uncharacterized LOC108349085 |
RGD ID: |
11453714 |
Description: |
|
Type: |
ncrna
|
RefSeq Status: |
MODEL |
Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 20 | 45,176,857 - 45,190,599 (+) | NCBI | | GRCr8 | | | mRatBN7.2 | 20 | 43,622,460 - 43,633,675 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | Rnor_6.0 | 20 | 45,313,334 - 45,325,227 (+) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Celera | 20 | 44,328,740 - 44,340,587 (+) | NCBI | | Celera | | | Cytogenetic Map | 20 | q12 | NCBI | | | | |
|
JBrowse: |
View Region in Genome Browser (JBrowse)
|
Model |
|
References
Genomics
QTLs in Region (mRatBN7.2)
7411652 | Foco24 | Food consumption QTL 24 | | 0.001 | eating behavior trait (VT:0001431) | feed conversion ratio (CMO:0001312) | 20 | 11757515 | 54435887 | Rat | 1331747 | Hrtrt16 | Heart rate QTL 16 | 3.163 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 20 | 25209734 | 54435887 | Rat | 9590092 | Insglur9 | Insulin/glucose ratio QTL 9 | 18.38 | 0.001 | blood insulin amount (VT:0001560) | calculated plasma insulin level (CMO:0002170) | 20 | 11757515 | 54435887 | Rat | 1598816 | Memor12 | Memory QTL 12 | 2.4 | | exploratory behavior trait (VT:0010471) | average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674) | 20 | 2606836 | 47606836 | Rat | 1598869 | Memor6 | Memory QTL 6 | 3.1 | | exploratory behavior trait (VT:0010471) | total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443) | 20 | 29244388 | 54435887 | Rat | 70158 | Bp60 | Blood pressure QTL 60 | 3 | | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 20 | 31614284 | 44396023 | Rat | 2303578 | Gluco50 | Glucose level QTL 50 | 2 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 20 | 25106722 | 54435887 | Rat | 2303626 | Vencon10 | Ventilatory control QTL 10 | | 0.001 | respiration trait (VT:0001943) | respiration rate (CMO:0000289) | 20 | 19190721 | 54435887 | Rat | 2305926 | Iddm37 | Insulin dependent diabetes mellitus QTL 37 | 6 | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 20 | 1527842 | 46527842 | Rat | 2317880 | Alcrsp25 | Alcohol response QTL 25 | 2.3 | | response to alcohol trait (VT:0010489) | duration of loss of righting reflex (CMO:0002289) | 20 | 17697550 | 54435887 | Rat | 4889610 | Pancm3 | Pancreatic morphology QTL 3 | 3.75 | 0.001 | pancreas mass (VT:0010144) | pancreas wet weight (CMO:0000626) | 20 | 17617832 | 47606836 | Rat | 2303587 | Bw93 | Body weight QTL 93 | 13 | | body mass (VT:0001259) | body weight (CMO:0000012) | 20 | 25106722 | 54435887 | Rat | 1641915 | Colcr9 | Colorectal carcinoma resistance QTL 9 | 2.97 | 0.0024 | intestine integrity trait (VT:0010554) | benign colorectal tumor number (CMO:0001795) | 20 | 1530655 | 46530655 | Rat | 2300188 | Bmd68 | Bone mineral density QTL 68 | 6.4 | 0.0001 | femur mineral mass (VT:0010011) | volumetric bone mineral density (CMO:0001553) | 20 | 25106722 | 54435887 | Rat | |
Expression
Sequence
RefSeq Acc Id: |
XR_001842496 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
GRCr8 | 20 | 45,176,869 - 45,188,814 (+) | NCBI | mRatBN7.2 | 20 | 43,622,460 - 43,633,675 (+) | NCBI | Rnor_6.0 | 20 | 45,313,334 - 45,325,227 (+) | NCBI |
|
Sequence: |
AGAAAAAAAAAAAAAAAATCAATCCATGCTAGCGCCAGCTAAGCGCCAGCAGCAAGGGTCTTCC CCCACCCACCATGGCTACCTCCCAAGCAGAGGTCCACCCAGTTTTCCAGGGTTTGCATTTTCCA AGCCGTCCGTCCCCTGCAGCTAGTTGTCACAAATCCCCATAACCCAGTAAATGAAAACTCCAGA GGCTTATAATTTATCAGCCAGATTTATAATAGTAAATCCTCAACCCCCAAAACGCCCACACAAA GAACTCAAAACTCTATTGATACTGATACGAGCTGCTCACCTAGATGGGGCAAATGTACCCTACA TTACTCTATTGTCCCTCTATGATATCCATAGCTGCCTGTGGCTTTTTCAGGCCACGTGGATCTG GTTCATCATCCTCTCCTATAGGTTCCATCTTGTCTTCTCGTGTCCCGACCCCCCTCCCCAATGC CCCCCCCAACCGTCTCTTCTCTAAAACTTTCAGCCACGCCTTCTTTTTCCATTGTCCAATCACA GTCTTCTATTTCACCTGCACAGACAGCAATCTACAACGAATCAGCAGCGGTGCCTGGCGTTGCC TAGCAGAGACAGCCAGGCCTCGGCTGAGTTATCTGAGTCTCCTCTCCCCAGTCTCAGGCGTACA TCCCATCTCACCCCAACTGTTTTCTGAACGCTAACCCATGAAGAACTAAAGAGCTGAGGACAGA AAGGCATGGGGCTCCCAGCGCTTAGGAAATGGAGGCTTGAGGACCAGTTAAAGTTAAAGGCCAT TCTCTGCTACACGGTGACTTTAAGGTAAACGTGATGCTTCCTGTTTGGCCTACTTCTCTGCATA CAACCCAACCAACAGCCTAGCACCGGTGCCTGGCATTTCAGACTCTGTCCGACTGGCCATGGGA ATGCACATCTGTAATTCTAGTCCTTGGAAAGAGAAGCAGAAGAATCACTACAGGTATAGCACAG CCGAGGGACACTACATCTTTAAGTCACTTAACGAGCACAGGTGTGACAACTGCCATCTTCTACA GAACTGAGAAAGCAAGGACACAGCAGCCACAGAAACCCTGCAATCTCAGCCCTGGAGATGGAAG CAAAGTGAACATGTGAGGCCCGCCTGGGTGTATCATACCTCGTCC
hide sequence
|
RefSeq Acc Id: |
XR_005497818 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
GRCr8 | 20 | 45,176,869 - 45,190,599 (+) | NCBI | mRatBN7.2 | 20 | 43,622,462 - 43,633,675 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005497819 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
GRCr8 | 20 | 45,176,919 - 45,188,814 (+) | NCBI | mRatBN7.2 | 20 | 43,622,478 - 43,633,675 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005497820 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
GRCr8 | 20 | 45,176,919 - 45,188,814 (+) | NCBI | mRatBN7.2 | 20 | 43,622,478 - 43,633,675 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005497821 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
GRCr8 | 20 | 45,176,919 - 45,188,814 (+) | NCBI | mRatBN7.2 | 20 | 43,622,478 - 43,633,675 (+) | NCBI |
|
RefSeq Acc Id: |
XR_005497822 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
GRCr8 | 20 | 45,176,919 - 45,188,814 (+) | NCBI | mRatBN7.2 | 20 | 43,622,478 - 43,633,675 (+) | NCBI |
|
RefSeq Acc Id: |
XR_010060892 |
Type: |
NON-CODING |
Position: |
Rat Assembly | Chr | Position (strand) | Source |
---|
GRCr8 | 20 | 45,176,857 - 45,188,814 (+) | NCBI |
|
Additional Information
Nomenclature History
Date |
Current Symbol |
Current Name |
Previous Symbol |
Previous Name |
Description |
Reference |
Status |
2016-08-02 |
LOC108349085 |
uncharacterized LOC108349085 |
|
|
Symbol and Name status set to provisional |
70820 |
PROVISIONAL |
|
|