LOC108353138 (sperm motility kinase X-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC108353138 (sperm motility kinase X-like) Rattus norvegicus
Analyze
Symbol: LOC108353138
Name: sperm motility kinase X-like
RGD ID: 11442890
Description: Predicted to enable ATP binding activity and protein serine/threonine kinase activity.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sperm motility kinase X
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81790,817,361 - 90,853,439 (-)NCBIGRCr8
mRatBN7.21785,756,189 - 85,762,026 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1785,637,552 - 85,848,563 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01789,395,155 - 89,396,745 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in LOC108353138
136 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000106296   ⟹   ENSRNOP00000093167
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1785,756,189 - 85,805,545 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114105   ⟹   ENSRNOP00000096563
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1785,756,185 - 85,848,563 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116716   ⟹   ENSRNOP00000079669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1785,637,552 - 85,761,957 (-)Ensembl
RefSeq Acc Id: XM_063276844   ⟹   XP_063132914
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81790,817,361 - 90,853,439 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063132914 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000079669.1
  ENSRNOP00000093167.1
  ENSRNOP00000096563.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000096563   ⟸   ENSRNOT00000114105
RefSeq Acc Id: ENSRNOP00000079669   ⟸   ENSRNOT00000116716
RefSeq Acc Id: ENSRNOP00000093167   ⟸   ENSRNOT00000106296
RefSeq Acc Id: XP_063132914   ⟸   XM_063276844
Protein Domains
Protein kinase

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-8464 BioCyc
Ensembl Genes ENSRNOG00000068619 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000106296.1 UniProtKB/TrEMBL
  ENSRNOT00000114105.1 UniProtKB/TrEMBL
  ENSRNOT00000116716.1 UniProtKB/TrEMBL
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
NCBI Gene LOC108353138 ENTREZGENE
PANTHER GENE 10662-RELATED UniProtKB/TrEMBL
  MAP/MICROTUBULE AFFINITY-REGULATING KINASE UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PhenoGen LOC108353138 PhenoGen
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
RatGTEx ENSRNOG00000068619 RatGTEx
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A8I5ZN46_RAT UniProtKB/TrEMBL
  A0A8I6AIK8_RAT UniProtKB/TrEMBL
  A0A8I6AM12_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108353138  sperm motility kinase X-like      Symbol and Name status set to provisional 70820 PROVISIONAL