LOC108348081 (CD99 antigen-like protein 2) - Rat Genome Database

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Gene: LOC108348081 (CD99 antigen-like protein 2) Rattus norvegicus
Analyze
Symbol: LOC108348081
Name: CD99 antigen-like protein 2
RGD ID: 11437172
Description:
Type: protein-coding
RefSeq Status: WITHDRAWN
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0155,715,592 - 5,894,883 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl155,715,592 - 5,894,854 (-)EnsemblRnor6.0rn6Rnor6.0
Cytogenetic Map15p16NCBI


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 2 2 2 48 2 8
Low 2 41 55 39 19 39 8 11 26 33 33 11 8
Below cutoff 1 2 4 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008770596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017588455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_008770596   ⟹   XP_008768818
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0155,715,592 - 5,894,883 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_008768818 (Get FASTA)   NCBI Sequence Viewer  
  XP_017443944 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_008768818   ⟸   XM_008770596
- Sequence:

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699576
Promoter ID:EPDNEW_R10099
Type:initiation region
Name:Cd99l2_1
Description:CD99 molecule-like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0155,894,809 - 5,894,869EPDNEW
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
15 5771917 5771918 A T snv FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW)
15 5771921 5771922 T C snv BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BN/SsN (2020), HXB2/IpcvMcwi (2019), BN-Lx/CubMcwi (2019), HXB10/IpcvMcwi (2019), HXB31/IpcvMcwi (2019)
15 5771926 5771927 C T snv CDR, HXB4/IpcvMcwi (2020), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/EurMcwi (2019), ACI/N (2020), BN-Lx/CubMcwi (2019), BN/NHsdMcwi (2020), BN/NHsdMcwi (2019), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB10/IpcvMcwi (2019), HXB20/IpcvMcwi (2020), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/NCrl (2019), WKY/N (2020), WN/N (2020), LN/MavRrrcAek (2020), ACI/EurMcwi (MCW), FHH/EurMcwi (MCW), BXH2/CubMcwi (2020), BXH3/CubMcwi (2020), CDS
15 5771975 5771976 C T snv ACI/EurMcwi (2019), SS/JrHsdMcwi (2019), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), ACI/N (2020)
15 5771990 5771991 G A snv ACI/EurMcwi (2019), HXB20/IpcvMcwi (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), WKY/N (2020), ACI/N (2020)
15 5771992 5771993 T A snv ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020)
15 5771999 5772000 C T snv ACI/EurMcwi (2019), WAG/RijCrl (2020), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SS/JrHsdMcwi (2019), ACI/N (2020)
15 5772002 5772003 G A snv FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW), GK/FarMcwi (2019)
15 5772004 5772005 C G snv FHL/EurMcwi (MCW), COP/CrCrl (MCW & UW)
15 5772005 5772006 G A snv F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), LEW/Crl (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SS/JrHsdMcwi (2019), WAG/RijCrl (2020), F344/NCrl (2019), F344/DuCrl (2019), DA/OlaHsd (2019), BUF/N (2020), ACI/EurMcwi (2019), ACI/N (2020)
15 5772014 5772015 G A snv WAG/RijCrl (2020), SR/JrHsd (2020), CDR, CDS, ACI/EurMcwi (MCW), GH/OmrMcwi (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), LEXF11/Stm (2020), COP/CrCrl (MCW & UW), FHL/EurMcwi (MCW), SBH/Ygl (MCW), ACI/EurMcwi (2019), ACI/N (2020), BN/NHsdMcwi (2019), BUF/N (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), LEW/Crl (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MR/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SS/JrHsdMcwi (2019)
15 5772019 5772020 T G snv ACI/EurMcwi (2019), MWF/Hsd (2019), BUF/N (2020), F344/DuCrl (2019), F344/NCrl (2019), FXLE16/Stm (2020), LEW/Crl (2019), LEXF3/Stm (2020), M520/N (2020), MR/N (2020), PVG/Seac (2019), WAG/RijCrl (2020), SS/JrHsdMcwi (2019), DA/OlaHsd (2019), F344/N (2020), F344/Stm (2019), FHH/EurMcwi (2019), FXLE18/Stm (2020), GK/FarMcwi (2019), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LE/Stm (2019), LH/MavRrrcAek (2020), LN/MavRrrcAek (2020), M520/NRrrcMcwi (2019), ACI/N (2020)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000018148 Ensembl
NCBI Gene LOC108348081 ENTREZGENE
PhenoGen LOC108348081 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-02 LOC108348081  CD99 antigen-like protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL