Sycp3 (synaptonemal complex protein 3) - Rat Genome Database

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Gene: Sycp3 (synaptonemal complex protein 3) Mus musculus
Analyze
Symbol: Sycp3
Name: synaptonemal complex protein 3
RGD ID: 11368
MGI Page MGI
Description: Predicted to enable DNA binding activity. Involved in female meiosis sister chromatid cohesion; meiotic chromosome segregation; and spermatogenesis. Acts upstream of or within several processes, including cellular response to leukemia inhibitory factor; meiosis I cell cycle process; and sperm DNA condensation. Located in condensed chromosome and germ cell nucleus. Is expressed in several structures, including adrenal gland; alimentary system; brain; genitourinary system; and primordial germ cell. Used to study azoospermia. Human ortholog(s) of this gene implicated in spermatogenic failure 4. Orthologous to human SYCP3 (synaptonemal complex protein 3).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Co; Cor1; Sc; SCP-3; Scp3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,295,449 - 88,309,098 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,295,431 - 88,309,098 (+)EnsemblGRCm39 Ensembl
GRCm381088,459,587 - 88,473,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,459,569 - 88,473,236 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,922,332 - 87,935,981 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361087,889,386 - 87,903,034 (+)NCBIMGSCv36mm8
Celera1090,439,295 - 90,453,077 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Database resources of the National Center for Biotechnology Information. Wheeler DL, etal., Nucleic Acids Res 2001 Jan 1;29(1):11-6.
Additional References at PubMed
PMID:8889548   PMID:9133341   PMID:9774970   PMID:10349636   PMID:10678170   PMID:10706124   PMID:10766740   PMID:10794082   PMID:10809667   PMID:11042159   PMID:11072798   PMID:11076861  
PMID:11094092   PMID:11203703   PMID:11279525   PMID:11311943   PMID:11319615   PMID:11702780   PMID:12004129   PMID:12032072   PMID:12091911   PMID:12477932   PMID:12584241   PMID:12591952  
PMID:12759374   PMID:12764197   PMID:12815066   PMID:12913077   PMID:14550528   PMID:14561636   PMID:14585983   PMID:14611631   PMID:14643120   PMID:14657244   PMID:14685160   PMID:14736746  
PMID:14970259   PMID:15162500   PMID:15162515   PMID:15237206   PMID:15305061   PMID:15383616   PMID:15465492   PMID:15546883   PMID:15657431   PMID:15870106   PMID:15937924   PMID:15939376  
PMID:15944199   PMID:16141072   PMID:16141073   PMID:16292313   PMID:16337934   PMID:16427609   PMID:16428451   PMID:16574820   PMID:16602821   PMID:16644921   PMID:16717125   PMID:16717126  
PMID:16806845   PMID:16850184   PMID:16887828   PMID:16908015   PMID:16968740   PMID:17115059   PMID:17141210   PMID:17298983   PMID:17344431   PMID:17369397   PMID:17488778   PMID:17526644  
PMID:17584971   PMID:17599069   PMID:17618286   PMID:17696610   PMID:17715177   PMID:17784788   PMID:17912366   PMID:17940049   PMID:18070917   PMID:18155190   PMID:18180366   PMID:18250097  
PMID:18283110   PMID:18316482   PMID:18354036   PMID:18436203   PMID:18651984   PMID:18694567   PMID:18802469   PMID:19014927   PMID:19074348   PMID:19283064   PMID:19345099   PMID:19520787  
PMID:19531582   PMID:19538736   PMID:19625504   PMID:19735653   PMID:19838304   PMID:19841137   PMID:19933217   PMID:20059948   PMID:20339291   PMID:20339383   PMID:20395201   PMID:20439489  
PMID:20454446   PMID:20479123   PMID:20508641   PMID:20547853   PMID:20551173   PMID:20647542   PMID:20707993   PMID:20833365   PMID:21115610   PMID:21123517   PMID:21224842   PMID:21242291  
PMID:21253613   PMID:21274006   PMID:21383078   PMID:21397847   PMID:21451147   PMID:21478856   PMID:21487003   PMID:21539824   PMID:21621532   PMID:21637789   PMID:21655083   PMID:21690297  
PMID:21743440   PMID:21750255   PMID:21852425   PMID:21873635   PMID:21991325   PMID:22011390   PMID:22071108   PMID:22164254   PMID:22346761   PMID:22360967   PMID:22448252   PMID:22530760  
PMID:22699483   PMID:22705479   PMID:22711701   PMID:22761579   PMID:22826121   PMID:22854038   PMID:22863743   PMID:23039116   PMID:23071697   PMID:23090997   PMID:23091613   PMID:23133398  
PMID:23151479   PMID:23154982   PMID:23269666   PMID:23274689   PMID:23293288   PMID:23300479   PMID:23396135   PMID:23401851   PMID:23451117   PMID:23486062   PMID:23555294   PMID:23616593  
PMID:23810942   PMID:24036309   PMID:24067652   PMID:24068956   PMID:24183939   PMID:24194600   PMID:24413433   PMID:24553289   PMID:24576537   PMID:24589552   PMID:24589776   PMID:24719256  
PMID:24797475   PMID:24885367   PMID:24891606   PMID:25010009   PMID:25031318   PMID:25158167   PMID:25344072   PMID:25416063   PMID:25533956   PMID:25605784   PMID:25609427   PMID:25611385  
PMID:25634095   PMID:25646409   PMID:25675407   PMID:25703348   PMID:25725066   PMID:25795304   PMID:25810472   PMID:25892231   PMID:26028219   PMID:26158450   PMID:26232174   PMID:26265072  
PMID:26358182   PMID:26443207   PMID:26470726   PMID:26490168   PMID:26589352   PMID:26742488   PMID:26834021   PMID:26892828   PMID:26917764   PMID:26923665   PMID:27040500   PMID:27072294  
PMID:27170441   PMID:27199373   PMID:27473657   PMID:27606421   PMID:27626380   PMID:27649575   PMID:27739607   PMID:27760146   PMID:27760317   PMID:27856912   PMID:27932493   PMID:28050734  
PMID:28118982   PMID:28128212   PMID:28235998   PMID:28292424   PMID:28302748   PMID:28380054   PMID:28504655   PMID:28552778   PMID:28700664   PMID:28938467   PMID:29087293   PMID:29324782  
PMID:29329290   PMID:29329412   PMID:29447390   PMID:29617656   PMID:29659998   PMID:29941866   PMID:30102701   PMID:30212841   PMID:30272023   PMID:30289439   PMID:30420384   PMID:30518625  
PMID:30569039   PMID:30657449   PMID:30718482   PMID:30746471   PMID:30760716   PMID:30850578   PMID:30949703   PMID:30951587   PMID:31059511   PMID:31084574   PMID:31256246   PMID:31358751  
PMID:31453335   PMID:31485074   PMID:31624230   PMID:31712577   PMID:31839538   PMID:31910233   PMID:31949138   PMID:32032549   PMID:32054698   PMID:32094118   PMID:32219340   PMID:32232159  
PMID:32301970   PMID:32365547   PMID:32452519   PMID:32460033   PMID:32674113   PMID:32759216   PMID:32845237   PMID:32892421   PMID:33362208   PMID:33574039   PMID:33602822   PMID:33666296  
PMID:33827806   PMID:33961623   PMID:34007995   PMID:34026442   PMID:34059773   PMID:34075040   PMID:34301885   PMID:34491997   PMID:34571960   PMID:34685710   PMID:34880491   PMID:34912016  
PMID:35075134   PMID:35084365   PMID:35292640   PMID:35310947   PMID:35410378   PMID:35489071   PMID:35534577   PMID:35549308   PMID:35550124   PMID:35596251   PMID:35648791   PMID:35671285  
PMID:35679863   PMID:35739118   PMID:35765931   PMID:35772791   PMID:35840551   PMID:35920200   PMID:36414375   PMID:36543770   PMID:36642183   PMID:36718792   PMID:36797258   PMID:36938872  
PMID:36973253   PMID:37037996   PMID:37349316   PMID:37880249   PMID:37963468   PMID:37973188  


Genomics

Comparative Map Data
Sycp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391088,295,449 - 88,309,098 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1088,295,431 - 88,309,098 (+)EnsemblGRCm39 Ensembl
GRCm381088,459,587 - 88,473,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1088,459,569 - 88,473,236 (+)EnsemblGRCm38mm10GRCm38
MGSCv371087,922,332 - 87,935,981 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361087,889,386 - 87,903,034 (+)NCBIMGSCv36mm8
Celera1090,439,295 - 90,453,077 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1043.94NCBI
SYCP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,728,648 - 101,739,462 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12101,728,648 - 101,739,472 (-)EnsemblGRCh38hg38GRCh38
GRCh3712102,122,426 - 102,133,240 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612100,646,557 - 100,657,378 (-)NCBINCBI36Build 36hg18NCBI36
Build 3412100,624,894 - 100,635,715NCBI
Celera12101,786,455 - 101,797,279 (-)NCBICelera
Cytogenetic Map12q23.2NCBI
HuRef1299,182,035 - 99,192,859 (-)NCBIHuRef
CHM1_112102,089,108 - 102,099,932 (-)NCBICHM1_1
T2T-CHM13v2.012101,689,875 - 101,700,721 (-)NCBIT2T-CHM13v2.0
Sycp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8724,761,476 - 24,775,933 (+)NCBIGRCr8
mRatBN7.2722,874,055 - 22,888,512 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl722,874,055 - 22,888,511 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx724,868,656 - 24,883,113 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0727,031,350 - 27,045,805 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0726,808,398 - 26,822,855 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0729,029,887 - 29,044,344 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl729,029,263 - 29,044,251 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0729,136,815 - 29,151,275 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.1725,191,726 - 25,192,071 (+)NCBI
Celera720,034,097 - 20,048,375 (+)NCBICelera
Cytogenetic Map7q13NCBI
Sycp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540537,093,652 - 37,102,856 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540537,093,330 - 37,102,789 (-)NCBIChiLan1.0ChiLan1.0
SYCP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210109,796,664 - 109,807,352 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112109,793,263 - 109,806,559 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01299,311,260 - 99,322,007 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112102,711,447 - 102,721,942 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12102,711,837 - 102,720,728 (-)Ensemblpanpan1.1panPan2
LOC102152531
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,060,275 - 121,074,166 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,401,388 - 106,409,336 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,173,207 - 124,188,278 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X119,976,667 - 119,990,524 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X122,376,068 - 122,474,584 (+)NCBIUNSW_CanFamBas_1.0
Sycp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494519,306,413 - 19,316,665 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649212,316,869 - 12,330,251 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649212,316,868 - 12,326,778 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYCP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl582,493,034 - 82,501,656 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1582,492,744 - 82,501,068 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2586,445,506 - 86,453,818 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SYCP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11196,980,937 - 96,992,225 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037148,012,889 - 148,022,547 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sycp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247506,349,400 - 6,358,180 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247506,345,112 - 6,358,724 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Sycp3
499 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:599
Count of miRNA genes:253
Interacting mature miRNAs:282
Transcripts:ENSMUST00000020252, ENSMUST00000123244, ENSMUST00000125612
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102287589991035862Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105851696992517096Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106684818792258673Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8249093890856102Mouse
12910789Pwgrq19_mpost-weaning growth rate QTL 19 (mouse)108282870092169056Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
13524528Bodwtq9_mbody wweight QTL 9 (mouse)108764311793193117Mouse
1357831Igf1sl2_mIGF-1 serum levels 2 (mouse)Not determined108769412799936278Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse

Markers in Region
Sycp3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371087,922,343 - 87,922,441UniSTSGRCm37
Celera1090,439,306 - 90,439,404UniSTS
Cytogenetic Map10CUniSTS
Y08485  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381088,473,080 - 88,473,217UniSTSGRCm38
MGSCv371087,935,825 - 87,935,962UniSTSGRCm37
Celera1090,452,921 - 90,453,058UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map10C1UniSTS
Whitehead/MRC_RH101012.76UniSTS
G65198  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381088,473,094 - 88,473,218UniSTSGRCm38
MGSCv371087,935,839 - 87,935,963UniSTSGRCm37
Celera1090,452,935 - 90,453,059UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map10CUniSTS
cM Map10 UniSTS
mScp3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10CUniSTS
Sycp3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10CUniSTS
Sycp3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381088,459,598 - 88,459,696UniSTSGRCm38
MGSCv371087,922,343 - 87,922,441UniSTSGRCm37
Celera1090,439,306 - 90,439,404UniSTS
Cytogenetic Map10CUniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000020252   ⟹   ENSMUSP00000020252
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,295,431 - 88,309,097 (+)Ensembl
GRCm38.p6 Ensembl1088,459,569 - 88,473,235 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123244   ⟹   ENSMUSP00000137704
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,295,526 - 88,309,098 (+)Ensembl
GRCm38.p6 Ensembl1088,459,664 - 88,473,236 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125612   ⟹   ENSMUSP00000137800
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1088,295,526 - 88,309,098 (+)Ensembl
GRCm38.p6 Ensembl1088,459,664 - 88,473,236 (+)Ensembl
RefSeq Acc Id: NM_011517   ⟹   NP_035647
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391088,295,449 - 88,309,098 (+)NCBI
GRCm381088,459,587 - 88,473,236 (+)ENTREZGENE
MGSCv371087,922,332 - 87,935,981 (+)RGD
Celera1090,439,295 - 90,453,077 (+)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_035647   ⟸   NM_011517
- UniProtKB: Q549A7 (UniProtKB/Swiss-Prot),   Q3V2A4 (UniProtKB/Swiss-Prot),   P70281 (UniProtKB/Swiss-Prot),   A2RSE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000137800   ⟸   ENSMUST00000125612
RefSeq Acc Id: ENSMUSP00000020252   ⟸   ENSMUST00000020252
RefSeq Acc Id: ENSMUSP00000137704   ⟸   ENSMUST00000123244
Protein Domains
XLR/SYCP3/FAM9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70281-F1-model_v2 AlphaFold P70281 1-254 view protein structure

Promoters
RGD ID:6819987
Promoter ID:MM_KWN:5285
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   Kidney,   Lung
Transcripts:OTTMUST00000057079,   UC007GRN.1,   UC007GRO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361087,922,156 - 87,922,656 (+)MPROMDB
RGD ID:8672988
Promoter ID:EPDNEW_M14524
Type:multiple initiation site
Name:Sycp3_1
Description:Mus musculus synaptonemal complex protein 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381088,459,664 - 88,459,724EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109542 AgrOrtholog
Ensembl Genes ENSMUSG00000020059 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000020252 ENTREZGENE
  ENSMUST00000020252.10 UniProtKB/TrEMBL
  ENSMUST00000123244.8 UniProtKB/TrEMBL
  ENSMUST00000125612.2 UniProtKB/TrEMBL
InterPro XLR/SYCP3/FAM9_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20962 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109542 ENTREZGENE
NCBI Gene 20962 ENTREZGENE
PANTHER SYNAPTONEMAL COMPLEX PROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  XLR/SCP3/FAM9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cor1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sycp3 PhenoGen
UniProt A2RSE7 ENTREZGENE, UniProtKB/TrEMBL
  M0QW86_MOUSE UniProtKB/TrEMBL
  M0QWF4_MOUSE UniProtKB/TrEMBL
  P70281 ENTREZGENE
  Q3V2A4 ENTREZGENE
  Q549A7 ENTREZGENE
  SYCP3_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q3V2A4 UniProtKB/Swiss-Prot
  Q549A7 UniProtKB/Swiss-Prot