Trav12d-2 (T cell receptor alpha variable 12D-2) - Rat Genome Database

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Gene: Trav12d-2 (T cell receptor alpha variable 12D-2) Mus musculus
Analyze
No known orthologs.
Symbol: Trav12d-2
Name: T cell receptor alpha variable 12D-2
RGD ID: 11332657
MGI Page MGI
Description: Orthologous to human TRAV18 (T cell receptor alpha variable 18).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: ENSMUSG00000072547; ENSMUSG00000076783; Gm10888
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,153,372 - 53,153,883 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,153,256 - 53,153,883 (+)EnsemblGRCm39 Ensembl
GRCm381452,915,915 - 52,916,426 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,915,799 - 52,916,426 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,535,590 - 53,536,101 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Cytogenetic Map14C2NCBI
cM Map1427.15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:3490968   PMID:15608191   PMID:21873635  


Genomics


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103593   ⟹   ENSMUSP00000100370
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,153,366 - 53,153,883 (+)Ensembl
GRCm38.p6 Ensembl1452,915,909 - 52,916,426 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197007   ⟹   ENSMUSP00000142977
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,153,256 - 53,153,883 (+)Ensembl
GRCm38.p6 Ensembl1452,915,799 - 52,916,426 (+)Ensembl
Protein Sequences
GenBank Protein CAA27863 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000100370.3
  ENSMUSP00000100396.3
  ENSMUSP00000142977.2
  ENSMUSP00000143168.2
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000142977   ⟸   ENSMUST00000197007
RefSeq Acc Id: ENSMUSP00000100370   ⟸   ENSMUST00000103593
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B626-F1-model_v2 AlphaFold A0A075B626 1-113 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3642520 AgrOrtholog
Ensembl Genes ENSMUSG00000096129 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSG00000096531 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103593.3 UniProtKB/TrEMBL
  ENSMUST00000103619.3 UniProtKB/TrEMBL
  ENSMUST00000196674.2 UniProtKB/TrEMBL
  ENSMUST00000197007.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
MGD MGI:3642520 ENTREZGENE
NCBI Gene Trav12d-2 ENTREZGENE
PANTHER T CELL RECEPTOR ALPHA VARIABLE 18 UniProtKB/TrEMBL
  T-CELL RECEPTOR ALPHA CHAIN V REGION UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav12d-2 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B626_MOUSE UniProtKB/TrEMBL
  A0A0G2JF09_MOUSE UniProtKB/TrEMBL
  Q5R1G5_MOUSE UniProtKB/TrEMBL