Trav13-1 (T cell receptor alpha variable 13-1) - Rat Genome Database

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Gene: Trav13-1 (T cell receptor alpha variable 13-1) Mus musculus
Analyze
Symbol: Trav13-1
Name: T cell receptor alpha variable 13-1
RGD ID: 11327691
MGI Page MGI
Description: Orthologous to human TRAV22 (T cell receptor alpha variable 22).
Type: gene (Ensembl: TR_V_gene)
RefSeq Status: VALIDATED
Previously known as: Gm16980
RGD Orthologs
Human
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,782,471 - 53,782,982 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,782,471 - 53,782,982 (+)EnsemblGRCm39 Ensembl
GRCm381453,545,014 - 53,545,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,545,014 - 53,545,525 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,164,689 - 54,165,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1449,806,839 - 49,807,493 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:15608191  


Genomics

Comparative Map Data
Trav13-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,782,471 - 53,782,982 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,782,471 - 53,782,982 (+)EnsemblGRCm39 Ensembl
GRCm381453,545,014 - 53,545,525 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1453,545,014 - 53,545,525 (+)EnsemblGRCm38mm10GRCm38
MGSCv371454,164,689 - 54,165,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1449,806,839 - 49,807,493 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.41NCBI
TRAV22
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381422,070,690 - 22,071,208 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1422,070,557 - 22,071,208 (+)EnsemblGRCh38hg38GRCh38
GRCh371422,538,953 - 22,539,471 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361421,608,793 - 21,609,311 (+)NCBINCBI36Build 36hg18NCBI36
Celera142,402,518 - 2,403,036 (+)NCBICelera
Cytogenetic Map14q11.2NCBI
HuRef142,656,780 - 2,657,298 (+)NCBIHuRef
CHM1_11422,538,592 - 22,539,110 (+)NCBICHM1_1
T2T-CHM13v2.01416,268,351 - 16,268,869 (+)NCBIT2T-CHM13v2.0
LOC102166266
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1777,241,423 - 77,242,625 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2782,348,517 - 82,349,122 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:149
Interacting mature miRNAs:151
Transcripts:ENSMUST00000103651
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145376129687761529Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000103651   ⟹   ENSMUSP00000100428
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,782,471 - 53,782,982 (+)Ensembl
GRCm38.p6 Ensembl1453,545,014 - 53,545,525 (+)Ensembl
Protein Sequences
Ensembl Protein ENSMUSP00000100428.4
Reference Protein Sequences
RefSeq Acc Id: ENSMUSP00000100428   ⟸   ENSMUST00000103651
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A075B644-F1-model_v2 AlphaFold A0A075B644 1-110 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:4439904 AgrOrtholog
Ensembl Genes ENSMUSG00000076839 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000103651.4 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
MGD MGI:4439904 ENTREZGENE
NCBI Gene Trav13-1 ENTREZGENE
PANTHER T CELL RECEPTOR ALPHA VARIABLE 13N-4 UniProtKB/TrEMBL
  T CELL RECEPTOR ALPHA VARIABLE 39 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PhenoGen Trav13-1 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART IGv UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A075B644_MOUSE UniProtKB/TrEMBL
  Q5R1D4_MOUSE UniProtKB/TrEMBL