Trav3d-2 (T cell receptor alpha variable 3D-2) - Rat Genome Database

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Gene: Trav3d-2 (T cell receptor alpha variable 3D-2) Mus musculus
Analyze
Symbol: Trav3d-2
Name: T cell receptor alpha variable 3D-2
RGD ID: 11274366
MGI Page MGI
Description:
Type: gene (Ensembl: TR_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: Gm3860; Trav3d-2p
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391453,125,044 - 53,125,537 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1453,125,044 - 53,125,537 (+)EnsemblGRCm39 Ensembl
GRCm381452,887,587 - 52,888,080 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1452,887,587 - 52,888,080 (+)EnsemblGRCm38mm10GRCm38
MGSCv371453,507,262 - 53,507,755 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1449,843,963 - 49,844,558 (+)NCBICelera
Cytogenetic Map14C2NCBI
cM Map1427.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14610273   PMID:15608191  


Genomics

Variants

.
Variants in Trav3d-2
15 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse
14746973Manh76_mmandible shape 76 (mouse)142228721756287217Mouse
4142485Modor2_mmodifier of ocular retardation 2 (mouse)Not determined142492624858179769Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142792195761137449Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142999699463997133Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143032195787937436Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143033525064335381Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143033525064335381Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143322195759437449Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143504579768785736Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143743018571430320Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4033731974337319Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144296241676962593Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144296241676962593Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144303727077037418Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144306584777066045Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144306584777066045Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4733525059962593Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144945542583455556Mouse
4142310Carg1_mCandida albicans resistance gene 1 (mouse)Not determined5138245954461655Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145228198486282125Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000199874
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1453,125,044 - 53,125,537 (+)Ensembl
GRCm38.p6 Ensembl1452,887,587 - 52,888,080 (+)Ensembl

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000106533 Ensembl, ENTREZGENE
MGD MGI:3782032 ENTREZGENE
NCBI Gene Trav3d-2 ENTREZGENE
PhenoGen Trav3d-2 PhenoGen