Sag (S-antigen, retina and pineal gland (arrestin)) - Rat Genome Database

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Gene: Sag (S-antigen, retina and pineal gland (arrestin)) Mus musculus
Analyze
Symbol: Sag
Name: S-antigen, retina and pineal gland (arrestin)
RGD ID: 11254
MGI Page MGI
Description: Enables opsin binding activity and phosphoprotein binding activity. Predicted to be involved in G protein-coupled receptor internalization. Located in photoreceptor inner segment and photoreceptor outer segment. Is expressed in eye and retina outer nuclear layer. Human ortholog(s) of this gene implicated in Oguchi disease-1; hereditary night blindness; and retinitis pigmentosa 47. Orthologous to human SAG (S-antigen visual arrestin); PARTICIPATES IN altered visual phototransduction pathway; retinitis pigmentosa pathway; visual phototransduction pathway; INTERACTS WITH 2,3',4,4',5-Pentachlorobiphenyl; 2,3,7,8-tetrachlorodibenzodioxine; bis(2-chloroethyl) sulfide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 48 kDa protein; A; A930001K18Rik; Arr1; arrestin; arrestin 1; Irbp; retinal S-antigen; rod arrestin; rod photoreceptor arrestin; S-AG; S-arrestin; visual arrestin 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,731,402 - 87,772,880 (+)NCBIGRCm39mm39
GRCm39 Ensembl187,731,402 - 87,772,880 (+)Ensembl
GRCm38187,798,143 - 87,845,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,803,680 - 87,845,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37189,700,255 - 89,741,732 (+)NCBIGRCm37mm9NCBIm37
MGSCv36189,634,851 - 89,676,328 (+)NCBImm8
Celera190,761,584 - 90,803,003 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map144.44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1358796   PMID:1458825   PMID:1611911   PMID:1675982   PMID:1676979   PMID:1682057   PMID:1879432   PMID:2045114   PMID:2558380   PMID:2571583   PMID:2977355   PMID:7698765  
PMID:8570653   PMID:8751373   PMID:9333241   PMID:9717434   PMID:10349636   PMID:10508404   PMID:10549660   PMID:10704496   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11468275  
PMID:11687607   PMID:11853756   PMID:12477932   PMID:12486395   PMID:12716919   PMID:12802257   PMID:12975449   PMID:14610273   PMID:15226823   PMID:15489334   PMID:15541899   PMID:15718098  
PMID:15944125   PMID:15947737   PMID:16110338   PMID:16141072   PMID:16141073   PMID:16219764   PMID:16421323   PMID:16436601   PMID:17108167   PMID:17194706   PMID:17360618   PMID:17460248  
PMID:17881515   PMID:18055791   PMID:18425122   PMID:18701071   PMID:19332500   PMID:19361994   PMID:19776273   PMID:20019357   PMID:20203204   PMID:20375344   PMID:20463215   PMID:20631167  
PMID:20638939   PMID:20926680   PMID:21075174   PMID:21177258   PMID:21288033   PMID:21677750   PMID:21818392   PMID:21873635   PMID:22869374   PMID:22912718   PMID:23476014   PMID:23690606  
PMID:23704327   PMID:23817741   PMID:24012956   PMID:24213570   PMID:24781939   PMID:24786833   PMID:25351983   PMID:25910054   PMID:26024096   PMID:26169958   PMID:26200343   PMID:26284544  
PMID:26624493   PMID:27353443   PMID:28551284   PMID:30048641   PMID:30133325   PMID:30553275   PMID:30890724   PMID:30947334   PMID:31696965   PMID:32290105  


Genomics

Comparative Map Data
Sag
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39187,731,402 - 87,772,880 (+)NCBIGRCm39mm39
GRCm39 Ensembl187,731,402 - 87,772,880 (+)Ensembl
GRCm38187,798,143 - 87,845,158 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl187,803,680 - 87,845,158 (+)EnsemblGRCm38mm10GRCm38
MGSCv37189,700,255 - 89,741,732 (+)NCBIGRCm37mm9NCBIm37
MGSCv36189,634,851 - 89,676,328 (+)NCBImm8
Celera190,761,584 - 90,803,003 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map144.44NCBI
SAG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2233,307,816 - 233,347,055 (+)EnsemblGRCh38hg38GRCh38
GRCh382233,307,816 - 233,347,066 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh372234,216,462 - 234,255,701 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362233,881,207 - 233,920,440 (+)NCBINCBI36hg18NCBI36
Build 342233,998,492 - 234,037,701NCBI
Celera2227,937,838 - 227,977,217 (+)NCBI
Cytogenetic Map2q37.1NCBI
HuRef2226,017,093 - 226,056,496 (+)NCBIHuRef
CHM1_12234,222,389 - 234,261,775 (+)NCBICHM1_1
Sag
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2988,467,797 - 88,508,821 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl988,469,376 - 88,508,820 (+)Ensembl
Rnor_6.0994,926,901 - 94,972,162 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl994,928,489 - 94,972,027 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0994,646,333 - 94,691,522 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4986,759,933 - 86,799,902 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1986,944,774 - 86,983,310 (+)NCBI
Celera254,322,671 - 54,345,084 (-)NCBICelera
Celera985,877,786 - 85,890,904 (+)NCBICelera
Cytogenetic Map9q35NCBI
Sag
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554532,844,925 - 2,878,846 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554532,845,561 - 2,878,342 (-)NCBIChiLan1.0ChiLan1.0
SAG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12B239,449,910 - 239,487,626 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B239,449,910 - 239,487,537 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02B120,532,049 - 120,574,914 (+)NCBIMhudiblu_PPA_v0panPan3
SAG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12544,800,141 - 44,843,580 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2544,812,362 - 44,843,579 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2545,307,685 - 45,338,815 (+)NCBI
ROS_Cfam_1.02545,060,350 - 45,103,430 (+)NCBI
UMICH_Zoey_3.12544,996,643 - 45,027,722 (+)NCBI
UNSW_CanFamBas_1.02544,842,616 - 44,873,724 (+)NCBI
UU_Cfam_GSD_1.02544,997,874 - 45,029,086 (+)NCBI
Sag
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303186,974,069 - 187,007,603 (+)NCBI
SpeTri2.0NW_0049365253,932,118 - 3,965,651 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15133,691,886 - 133,741,798 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115133,704,975 - 133,741,844 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215147,580,489 - 147,592,533 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.215147,812,862 - 147,835,188 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SAG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110119,343,562 - 119,383,119 (+)NCBI
ChlSab1.1 Ensembl10119,344,090 - 119,382,983 (+)Ensembl
Vero_WHO_p1.0NW_02366604080,120,831 - 80,162,410 (-)NCBI
Sag
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248435,837,105 - 5,870,417 (+)NCBI

Position Markers
M24086  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38187,845,075 - 87,845,149UniSTSGRCm38
MGSCv37189,741,650 - 89,741,724UniSTSGRCm37
Celera190,802,921 - 90,802,995UniSTS
Cytogenetic Map1DUniSTS
cM Map153.6UniSTS
Whitehead/MRC_RH11257.17UniSTS
Whitehead_YAC1 UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
px-50g7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map7B5UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map3B-DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map4C1UniSTS
Cytogenetic Map18CUniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map2F2UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic Map9A1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map4D2.2UniSTS
cM Map74.0UniSTS
cM Map1718.88UniSTS
cM Map241.25UniSTS
cM Map727.0UniSTS
cM Map342.1UniSTS
cM Map275.0UniSTS
cM Map153.6UniSTS
cM Map91.0UniSTS
Sag  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1DUniSTS
cM Map144.44UniSTS
M24086  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38187,845,045 - 87,845,130UniSTSGRCm38
MGSCv37189,741,620 - 89,741,705UniSTSGRCm37
Celera190,802,891 - 90,802,976UniSTS
Cytogenetic Map1DUniSTS
Whitehead/MRC_RH11257.17UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558928Mord2_mmodifier of retinal degeneration 2 (mouse)Not determined177146478110608345Mouse
14696692Tavq1_mtotal attack value QTL 1 (mouse)18200000088500000Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134721057150318120Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145744740189571420Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16584984788568379Mouse
25394564Skmw49_mskeletal muscle weight 49, TA (mouse)18344239888624908Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167300000129800000Mouse
10412238Alpq5_malcohol preference QTL 5 (mouse)Not determined182904910116904910Mouse
1300821Lore1_mloss of righting induced by ethanol 1 (mouse)Not determined17557254793013355Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170205811104211835Mouse
14696691Malq1_mmean attack latency QTL 1 (mouse)17800000088000000Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163815531189571420Mouse
12790991Aath1_maortic arch atherosclerosis 1 (mouse)186556204120556204Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180267876126458780Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74477076148839837Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134721057150318120Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15857254792572799Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163880843153681816Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162907596120601949Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52418578182423027Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174952818133363199Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173716016147249632Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15668776390687918Mouse
14747009Manh49_mmandible shape 49 (mouse)15790219291902192Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73687970107688108Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15593578989935898Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15622705590227201Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13000000185000000Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134721057150318120Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182665468135687641Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)176000000148900000Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15857254792572799Mouse
12050069Nabq1_mnasal bone morphology QTL 1 (mouse)179930958113931066Mouse
14697706Stsl3a_mSalmonella typhimurium susceptibility locus 3a (mouse)17750000095900000Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15795281891952921Mouse
4141725Wbcq4_mwhite blood cell quantitative locus 4 (mouse)Not determined179930958113931066Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173227055108910684Mouse
14696693Avd2q1_mattack value day 2 QTL 1 (mouse)17900000091000000Mouse
12791004Aath7_maortic arch atherosclerosis 7 (mouse)182904910116904910Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)176000000181500000Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173687970107688108Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15795281891952921Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)176000000128600000Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782314261147249632Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15790219291902192Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15795281891952921Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15622705590227201Mouse
11667074Led2_mlate embryonic death 2 (mouse)185768306117267351Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15668776390687918Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139093727126517573Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:951
Count of miRNA genes:438
Interacting mature miRNAs:508
Transcripts:ENSMUST00000077772, ENSMUST00000128761, ENSMUST00000130886, ENSMUST00000136708, ENSMUST00000144334, ENSMUST00000145385, ENSMUST00000155393, ENSMUST00000156381, ENSMUST00000177757
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_009118 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006529274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011247944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036162893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC102630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149299 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY651760 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC016498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC026984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M24086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000077772   ⟹   ENSMUSP00000076948
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,731,402 - 87,772,880 (+)Ensembl
GRCm38.p6 Ensembl187,803,680 - 87,845,158 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128761
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,731,402 - 87,763,118 (+)Ensembl
GRCm38.p6 Ensembl187,803,680 - 87,835,396 (+)Ensembl
RefSeq Acc Id: ENSMUST00000130886
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,731,402 - 87,753,022 (+)Ensembl
GRCm38.p6 Ensembl187,803,680 - 87,825,300 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136708
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,748,429 - 87,752,191 (+)Ensembl
GRCm38.p6 Ensembl187,820,707 - 87,824,469 (+)Ensembl
RefSeq Acc Id: ENSMUST00000144334
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,739,886 - 87,752,181 (+)Ensembl
GRCm38.p6 Ensembl187,812,164 - 87,824,459 (+)Ensembl
RefSeq Acc Id: ENSMUST00000145385
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,754,210 - 87,763,136 (+)Ensembl
GRCm38.p6 Ensembl187,826,488 - 87,835,414 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155393
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,731,402 - 87,762,632 (+)Ensembl
GRCm38.p6 Ensembl187,803,680 - 87,834,910 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156381
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,731,402 - 87,745,585 (+)Ensembl
GRCm38.p6 Ensembl187,803,680 - 87,817,863 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177757   ⟹   ENSMUSP00000136729
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl187,731,402 - 87,772,745 (+)Ensembl
GRCm38.p6 Ensembl187,803,680 - 87,845,023 (+)Ensembl
RefSeq Acc Id: NM_009118   ⟹   NP_033144
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,731,402 - 87,772,879 (+)NCBI
GRCm38187,803,680 - 87,845,157 (+)NCBI
MGSCv37189,700,255 - 89,741,732 (+)RGD
Celera190,761,584 - 90,803,003 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006529274   ⟹   XP_006529337
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,741,022 - 87,772,880 (+)NCBI
GRCm38187,813,300 - 87,845,158 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011247944   ⟹   XP_011246246
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,739,412 - 87,772,880 (+)NCBI
GRCm38187,812,108 - 87,845,158 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252327   ⟹   XP_030108187
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,731,801 - 87,772,880 (+)NCBI
GRCm38187,805,262 - 87,845,158 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252329   ⟹   XP_030108189
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,741,022 - 87,772,880 (+)NCBI
GRCm38187,813,300 - 87,845,158 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036162886   ⟹   XP_036018779
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,741,022 - 87,772,880 (+)NCBI
RefSeq Acc Id: XM_036162893   ⟹   XP_036018786
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39187,745,241 - 87,772,880 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_033144   ⟸   NM_009118
- UniProtKB: P20443 (UniProtKB/Swiss-Prot),   Q3UPX6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006529337   ⟸   XM_006529274
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011246246   ⟸   XM_011247944
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030108187   ⟸   XM_030252327
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030108189   ⟸   XM_030252329
- Peptide Label: isoform X5
RefSeq Acc Id: ENSMUSP00000136729   ⟸   ENSMUST00000177757
RefSeq Acc Id: ENSMUSP00000076948   ⟸   ENSMUST00000077772
RefSeq Acc Id: XP_036018779   ⟸   XM_036162886
- Peptide Label: isoform X3
RefSeq Acc Id: XP_036018786   ⟸   XM_036162893
- Peptide Label: isoform X6
Protein Domains
Arrestin_C

Promoters
RGD ID:6874390
Promoter ID:EPDNEW_M646
Type:initiation region
Name:Sag_1
Description:Mus musculus S-antigen, retina and pineal gland , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38187,803,922 - 87,803,982EPDNEW
RGD ID:6818425
Promoter ID:MM_KWN:1531
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Spleen
Transcripts:OTTMUST00000051797
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36189,723,756 - 89,724,977 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98227 AgrOrtholog
Ensembl Genes ENSMUSG00000056055 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000076948 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000136729 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000077772 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000177757 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.840 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Arrestin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arrestin-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arrestin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arrestin_C-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arrestin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arrestin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_E-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20215 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98227 ENTREZGENE
NCBI Gene 20215 ENTREZGENE
PANTHER PTHR11792 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Arrestin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Arrestin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sag PhenoGen
PRINTS ARRESTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ARRESTINS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Arrestin_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF81296 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt ARRS_MOUSE UniProtKB/Swiss-Prot
  J3QNF6_MOUSE UniProtKB/TrEMBL
  P20443 ENTREZGENE
  Q3UEW3_MOUSE UniProtKB/TrEMBL
  Q3UPX6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BPV0_MOUSE UniProtKB/TrEMBL
  Q8C8Y8_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q91W62 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-13 Sag  S-antigen, retina and pineal gland (arrestin)    retinal S-antigen  Symbol and/or name change 5135510 APPROVED