S100b (S100 protein, beta polypeptide, neural) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: S100b (S100 protein, beta polypeptide, neural) Mus musculus
Analyze
Symbol: S100b
Name: S100 protein, beta polypeptide, neural
RGD ID: 11252
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; integumental system; nervous system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; aspergillosis; and schizophrenia. Orthologous to human S100B (S100 calcium binding protein B); PARTICIPATES IN calcium/calcium-mediated signaling pathway; INTERACTS WITH (S)-nicotine; 1,2-dimethylhydrazine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI850290; Bpb; MGC74317; protein S100-B; S-100 protein beta chain; S-100 protein subunit beta; S100 calcium-binding protein B
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,089,670 - 76,097,153 (+)NCBIGRCm39mm39
GRCm39 Ensembl1076,089,687 - 76,096,993 (+)Ensembl
GRCm381076,253,836 - 76,261,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,253,853 - 76,261,159 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,716,581 - 75,724,064 (+)NCBIGRCm37mm9NCBIm37
MGSCv361075,697,569 - 75,703,813 (+)NCBImm8
Celera1077,297,763 - 77,305,246 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(+)-pilocarpine  (ISO)
(1->3)-beta-D-glucan  (ISO)
(R)-lipoic acid  (ISO)
(R)-noradrenaline  (ISO)
(S)-nicotine  (EXP)
1,2-dimethylhydrazine  (EXP,ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (EXP)
2,2,2-tetramine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
3,4-dihydroxybenzaldehyde  (ISO)
3,7-dihydropurine-6-thione  (ISO)
3-[3-(tert-butylsulfanyl)-1-(4-chlorobenzyl)-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
6-propyl-2-thiouracil  (ISO)
aconitine  (EXP)
aluminium atom  (ISO)
aluminium(0)  (ISO)
aminoguanidine  (ISO)
ammonia  (ISO)
ammonium chloride  (ISO)
arsenous acid  (ISO)
astemizole  (ISO)
benzo[a]pyrene  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buspirone  (EXP)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
capsaicin  (ISO)
carbofuran  (ISO)
carbon nanotube  (EXP)
chrysin  (EXP)
cobalt atom  (ISO)
cocaine  (ISO)
cycloheximide  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibenziodolium  (ISO)
dibutyl phthalate  (ISO)
dimethoate  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
fluoxetine  (EXP,ISO)
folic acid  (EXP)
furosemide  (ISO)
glyphosate  (ISO)
heparin  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ketamine  (ISO)
L-ascorbic acid  (ISO)
lead diacetate  (ISO)
lipoic acid  (ISO)
manganese(II) chloride  (EXP)
mercaptopurine  (ISO)
mercury atom  (ISO)
mercury(0)  (ISO)
methylmercury chloride  (ISO)
monascin  (ISO)
morphine  (EXP)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
nickel sulfate  (ISO)
nicotine  (EXP)
nitric oxide  (EXP,ISO)
nitroprusside  (ISO)
ouabain  (ISO)
oxidopamine  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl caffeate  (ISO)
phenylephrine  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
purine-6-thiol  (ISO)
quercetin  (ISO)
reactive oxygen species  (EXP,ISO)
resveratrol  (ISO)
risperidone  (ISO)
SB 203580  (EXP)
SB 431542  (ISO)
Soman  (ISO)
streptozocin  (ISO)
titanium dioxide  (EXP)
trichostatin A  (ISO)
Tungsten carbide  (ISO)
valproic acid  (EXP,ISO)
veliparib  (EXP)
vinclozolin  (ISO)
vitamin E  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
1. Al-Jarrah MD and Jamous M, NeuroRehabilitation. 2011;28(4):359-63.
2. Aviles-Reyes RX, etal., J Neurochem. 2010 Feb;112(4):854-69. Epub 2009 Dec 10.
3. Baydas G, etal., Free Radic Biol Med. 2003 Oct 1;35(7):797-804.
4. Beer C, etal., J Neuroinflammation. 2010 Oct 29;7:71.
5. Berger RP, etal., Dev Neurosci. 2010;32(5-6):396-405. Epub 2010 Sep 18.
6. Brouns R, etal., Clin Chem. 2010 Mar;56(3):451-8. Epub 2009 Dec 3.
7. Brozzi F, etal., J Biol Chem. 2009 Mar 27;284(13):8797-811. Epub 2009 Jan 15.
8. Cai XY, etal., Atherosclerosis. 2011 Aug;217(2):536-42. Epub 2011 May 27.
9. Canzobre MC and Rios H, Neurosci Lett. 2010 Feb 5;470(1):71-5. Epub 2009 Dec 30.
10. Chaung WW, etal., Mol Med. 2011;17(9-10):1075-83. doi: 10.2119/molmed.2010.00104. Epub 2011 Jun 17.
11. Chaves ML, etal., J Neuroinflammation. 2010 Jan 27;7:6.
12. Chohan G, etal., J Neurol Neurosurg Psychiatry. 2010 Nov;81(11):1243-8. Epub 2010 Sep 20.
13. Collino M, etal., Diabetes. 2009 Jan;58(1):235-42. Epub 2008 Oct 7.
14. Cunha C, etal., PLoS One. 2011;6(11):e27962. doi: 10.1371/journal.pone.0027962. Epub 2011 Nov 17.
15. Fujii C, etal., Neurosci Lett. 2011 Apr 20;494(1):86-8. Epub 2011 Mar 1.
16. Gankam Kengne F, etal., J Am Soc Nephrol. 2011 Oct;22(10):1834-45. Epub 2011 Sep 1.
17. Gazzolo D, etal., Clin Chem. 2004 May;50(5):941-4.
18. Gazzolo D, etal., Crit Care Med. 2004 Jan;32(1):131-6.
19. Ge YL, etal., Acta Anaesthesiol Scand. 2007 Nov;51(10):1331-7.
20. Gitton Y, etal., Nature 2002 Dec 5;420(6915):586-90.
21. Gonzalez-Quevedo A, etal., Clin Biochem. 2011 Feb;44(2-3):154-9. Epub 2010 Dec 1.
22. Hamed SA, etal., Neuropediatrics. 2009 Apr;40(2):66-72. Epub 2009 Oct 6.
23. James ML, etal., Biomarkers. 2009 Sep;14(6):388-94.
24. Lebed YV, etal., Neurosci Lett. 2008 Oct 24;444(2):181-5. Epub 2008 Aug 8.
25. Lee SJ, etal., Emerg Med J. 2010 Mar;27(3):209-12.
26. Lin YW and Hsieh CL, J Ethnopharmacol. 2011 May 17;135(2):313-20. Epub 2011 Mar 21.
27. Liu J, etal., Biochem Biophys Res Commun. 2005 Mar 4;328(1):335-41. doi: 10.1016/j.bbrc.2004.12.175.
28. MacDonald G, etal., Genomics 1991 Oct;11(2):317-23.
29. Machado-Vieira R, etal., Life Sci. 2004 Dec 31;76(7):805-11.
30. Mazzini GS, etal., J Card Fail. 2007 Dec;13(10):850-4.
31. MGD and Homologene mouse data transfer
32. MGD data from the GO Consortium
33. MGD IEA
34. Mori T, etal., Glia. 2010 Feb;58(3):300-14.
35. Ohtaki N, etal., J Virol. 2007 Jun;81(11):5940-8. Epub 2007 Mar 21.
36. Oses JP, etal., Brain Res Bull. 2004 Sep 30;64(3):237-42.
37. Pelinka LE, etal., Br J Anaesth. 2003 Oct;91(4):595-7.
38. Petzold A, etal., Brain. 2002 Jul;125(Pt 7):1462-73.
39. Petzold A, etal., Muscle Nerve. 2010 Jan;41(1):42-9.
40. Qi LY, etal., Neurosci Lett. 2009 Sep 22;462(2):113-7. Epub 2009 Jun 17.
41. Reymond A, etal., Nature 2002 Dec 5;420(6915):582-6.
42. RGD automated import pipeline
43. RGD automated import pipeline for gene-chemical interactions
44. Rodrigues L, etal., J Neural Transm. 2010 Nov;117(11):1295-305. Epub 2010 Oct 16.
45. Roltsch E, etal., J Neuroinflammation. 2010 Nov 16;7:78.
46. Schaub MC and Heizmann CW, Biochem Biophys Res Commun. 2008 Apr 25;369(1):247-64. Epub 2007 Oct 25.
47. Sorci G, etal., PLoS Pathog. 2011 Mar;7(3):e1001315. Epub 2011 Mar 10.
48. Tanaka Y, etal., Life Sci. 2007 Aug 2;81(8):657-63. Epub 2007 Jul 21.
49. Tsoporis JN, etal., Circ Res. 2010 Jan 8;106(1):93-101. Epub 2009 Nov 12.
50. Yao R, etal., Anticancer Res. 2007 Sep-Oct;27(5A):3051-8.
51. Ye Y, etal., Neurosci Lett. 2011 Sep 26;503(1):15-9. Epub 2011 Aug 6.
52. Yilmaz N, etal., Cell Mol Neurobiol. 2011 May;31(4):579-85. Epub 2011 Feb 4.
53. Zhai J, etal., Behav Brain Res. 2011 Mar 1;217(2):363-8. Epub 2010 Nov 9.
54. Zhou J, etal., Zhong Nan Da Xue Xue Bao Yi Xue Ban. 2011 Jun;36(6):504-10.
55. Zurek J and Fedora M, Acta Neurochir (Wien). 2011 Oct 7.
Additional References at PubMed
PMID:1359872   PMID:1783381   PMID:1975791   PMID:2323034   PMID:7511035   PMID:7546735   PMID:7558021   PMID:7582813   PMID:7749229   PMID:7851892   PMID:7916323   PMID:8137163  
PMID:8202493   PMID:8376406   PMID:8565847   PMID:8611721   PMID:8787758   PMID:8846093   PMID:8889548   PMID:8898859   PMID:8946407   PMID:8949922   PMID:9232833   PMID:9628829  
PMID:9754881   PMID:9834195   PMID:10051316   PMID:10349636   PMID:10395934   PMID:10467564   PMID:10588868   PMID:10613844   PMID:10617132   PMID:10655525   PMID:10837142   PMID:11027232  
PMID:11032813   PMID:11042146   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11222062   PMID:11409899   PMID:11835317   PMID:11872254   PMID:11891290   PMID:12042313   PMID:12377780  
PMID:12393261   PMID:12466851   PMID:12477932   PMID:12490199   PMID:12508309   PMID:12526882   PMID:12533614   PMID:12561079   PMID:12618141   PMID:12645009   PMID:12673835   PMID:12742260  
PMID:12812790   PMID:12842915   PMID:14610273   PMID:14625556   PMID:14638863   PMID:14648547   PMID:14681479   PMID:15102707   PMID:15126113   PMID:15236402   PMID:15248193   PMID:15336958  
PMID:15489334   PMID:15555923   PMID:15572147   PMID:15621007   PMID:15699280   PMID:15714282   PMID:15782413   PMID:15810011   PMID:15852015   PMID:15882580   PMID:15944126   PMID:16014513  
PMID:16141072   PMID:16141073   PMID:16330018   PMID:16467531   PMID:16518823   PMID:16537572   PMID:16600520   PMID:16938360   PMID:17024657   PMID:17042795   PMID:17078026   PMID:17178400  
PMID:17331210   PMID:17362503   PMID:17391983   PMID:17436285   PMID:17537790   PMID:17553984   PMID:17661397   PMID:17729158   PMID:17942321   PMID:18024993   PMID:18031722   PMID:18090917  
PMID:18215621   PMID:18287078   PMID:18451356   PMID:18501628   PMID:18551627   PMID:18599158   PMID:18638525   PMID:18641643   PMID:18649404   PMID:18728187   PMID:18812013   PMID:18854036  
PMID:18945900   PMID:19298847   PMID:19345204   PMID:19373938   PMID:19389366   PMID:19679874   PMID:19701198   PMID:19713945   PMID:19718438   PMID:19723505   PMID:20069545   PMID:20096683  
PMID:20099023   PMID:20203209   PMID:20387078   PMID:20457761   PMID:20463215   PMID:20549747   PMID:20554876   PMID:20610746   PMID:20825492   PMID:20830809   PMID:20881139   PMID:20935640  
PMID:21048147   PMID:21122816   PMID:21125652   PMID:21146588   PMID:21147077   PMID:21220101   PMID:21264954   PMID:21267068   PMID:21319224   PMID:21376255   PMID:21545793   PMID:21677750  
PMID:21693512   PMID:21693575   PMID:21776083   PMID:21779383   PMID:21856951   PMID:21857657   PMID:21873635   PMID:21957238   PMID:22046273   PMID:22056141   PMID:22071110   PMID:22103411  
PMID:22156770   PMID:22160720   PMID:22173850   PMID:22223678   PMID:22234186   PMID:22266424   PMID:22461560   PMID:22508049   PMID:22522171   PMID:22542597   PMID:22689348   PMID:22705452  
PMID:22766236   PMID:22828627   PMID:22906231   PMID:22918885   PMID:22951639   PMID:22956844   PMID:23000886   PMID:23100423   PMID:23169921   PMID:23196656   PMID:23223288   PMID:23293287  
PMID:23382203   PMID:23482493   PMID:23695674   PMID:23719262   PMID:23729438   PMID:23744272   PMID:23804363   PMID:23806210   PMID:23821580   PMID:23828756   PMID:23895693   PMID:23899512  
PMID:23948251   PMID:24120991   PMID:24236178   PMID:24239551   PMID:24301385   PMID:24466267   PMID:24582971   PMID:24652767   PMID:24717433   PMID:24859200   PMID:24931760   PMID:24952961  
PMID:24979729   PMID:24983448   PMID:25044744   PMID:25079316   PMID:25151262   PMID:25152033   PMID:25176044   PMID:25285789   PMID:25327963   PMID:25331604   PMID:25382142   PMID:25433207  
PMID:25482070   PMID:25556712   PMID:25564653   PMID:25757744   PMID:25817898   PMID:25883935   PMID:25888505   PMID:25934499   PMID:25995483   PMID:26115514   PMID:26204512   PMID:26348989  
PMID:26387477   PMID:26499172   PMID:26571399   PMID:26644518   PMID:26651999   PMID:26657772   PMID:26740489   PMID:26907191   PMID:27076429   PMID:27142930   PMID:27196066   PMID:27291295  
PMID:27294512   PMID:27318131   PMID:27601207   PMID:27693255   PMID:27707970   PMID:27798843   PMID:27914912   PMID:27965439   PMID:28087714   PMID:28174179   PMID:28266561   PMID:28280459  
PMID:28373281   PMID:28402856   PMID:28656980   PMID:28684471   PMID:28728023   PMID:28965759   PMID:28970581   PMID:28984873   PMID:29285798   PMID:29326173   PMID:29483282   PMID:29499206  
PMID:29732603   PMID:29779941   PMID:29899142   PMID:30076898   PMID:30229393   PMID:30266827   PMID:30292786   PMID:30348677   PMID:30472119   PMID:30668728   PMID:30759972   PMID:30819894  
PMID:30870413   PMID:30870432   PMID:31043739   PMID:31143101   PMID:31200100   PMID:31318166   PMID:31586559   PMID:31690636   PMID:31696965   PMID:31801076   PMID:31953387   PMID:32017713  
PMID:32024956   PMID:32081718   PMID:32220631   PMID:32291340   PMID:32325033   PMID:32579270   PMID:33116259  


Genomics

Comparative Map Data
S100b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391076,089,670 - 76,097,153 (+)NCBIGRCm39mm39
GRCm39 Ensembl1076,089,687 - 76,096,993 (+)Ensembl
GRCm381076,253,836 - 76,261,319 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1076,253,853 - 76,261,159 (+)EnsemblGRCm38mm10GRCm38
MGSCv371075,716,581 - 75,724,064 (+)NCBIGRCm37mm9NCBIm37
MGSCv361075,697,569 - 75,703,813 (+)NCBImm8
Celera1077,297,763 - 77,305,246 (+)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1038.76NCBI
S100B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl2146,598,604 - 46,605,208 (-)EnsemblGRCh38hg38GRCh38
GRCh382146,598,604 - 46,605,243 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh372148,018,517 - 48,024,995 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362146,842,959 - 46,849,463 (-)NCBINCBI36hg18NCBI36
Build 342146,842,958 - 46,849,424NCBI
Celera2133,131,698 - 33,138,202 (-)NCBI
Cytogenetic Map21q22.3NCBI
HuRef2133,398,429 - 33,404,960 (-)NCBIHuRef
CHM1_12147,579,370 - 47,585,892 (-)NCBICHM1_1
S100b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22012,372,866 - 12,381,619 (-)NCBI
Rnor_6.0 Ensembl2013,130,636 - 13,142,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02013,130,633 - 13,142,856 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02015,287,745 - 15,296,485 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42012,791,440 - 12,824,508 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12012,791,666 - 12,824,735 (-)NCBI
Celera2013,867,276 - 13,875,895 (-)NCBICelera
Cytogenetic Map20p12NCBI
S100b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540742,972,584 - 42,980,510 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540742,972,584 - 42,980,510 (-)NCBIChiLan1.0ChiLan1.0
S100B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12146,197,750 - 46,203,953 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2146,197,750 - 46,203,953 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v02133,063,845 - 33,070,073 (-)NCBIMhudiblu_PPA_v0panPan3
S100B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl3139,784,506 - 39,788,183 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.13139,783,990 - 39,788,289 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
S100B
(Sus scrofa - pig)
No map positions available.
S100B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1290,188,820 - 90,194,986 (-)NCBI
ChlSab1.1 Ensembl290,188,639 - 90,195,023 (-)Ensembl
S100b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474531,645,927 - 31,652,846 (-)NCBI

Position Markers
AI850290  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371075,723,547 - 75,723,689UniSTSGRCm37
Celera1077,304,729 - 77,304,871UniSTS
Cytogenetic Map10C1UniSTS
cM Map10 UniSTS
Whitehead/MRC_RH10871.11UniSTS
UniSTS:224308  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381076,260,202 - 76,260,357UniSTSGRCm38
MGSCv371075,722,947 - 75,723,102UniSTSGRCm37
Celera1077,304,129 - 77,304,284UniSTS
Cytogenetic Map10C1UniSTS
cM Map1041.0UniSTS
S100b  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10C1UniSTS
cM Map1041.0UniSTS
AI850290  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381076,260,802 - 76,260,944UniSTSGRCm38
MGSCv371075,723,547 - 75,723,689UniSTSGRCm37
Celera1077,304,729 - 77,304,871UniSTS
Cytogenetic Map10C1UniSTS
Whitehead/MRC_RH10871.11UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
4142313Angvq1_mangiogenesis by VEGF QTL 1 (mouse)Not determined4684430782655287Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
1301380Cia8_mcollagen induced arthritis QTL 8 (mouse)Not determined105161730482655287Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106701240892422811Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
4142107Obrq12_mobesity resistance QTL 12 (mouse)Not determined7415138482655287Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:357
Count of miRNA genes:261
Interacting mature miRNAs:294
Transcripts:ENSMUST00000036387
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000036387   ⟹   ENSMUSP00000047968
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1076,253,853 - 76,261,159 (+)Ensembl
RefSeq Acc Id: NM_009115   ⟹   NP_033141
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391076,089,670 - 76,097,153 (+)NCBI
GRCm381076,253,836 - 76,261,319 (+)ENTREZGENE
MGSCv371075,716,581 - 75,724,064 (+)RGD
Celera1077,297,763 - 77,305,246 (+)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_033141   ⟸   NM_009115
- UniProtKB: P50114 (UniProtKB/Swiss-Prot),   Q3UY00 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000047968   ⟸   ENSMUST00000036387
Protein Domains
EF-hand

Promoters
RGD ID:6819876
Promoter ID:MM_KWN:4622
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   Brain
Transcripts:NM_009115
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361075,716,371 - 75,716,871 (+)MPROMDB
RGD ID:8672370
Promoter ID:EPDNEW_M14215
Type:initiation region
Name:S100b_1
Description:Mus musculus S100 protein, beta polypeptide, neural , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381076,253,909 - 76,253,969EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98217 AgrOrtholog
Ensembl Genes ENSMUSG00000033208 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000047968 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000036387 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro EF-hand-dom_pair UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100-B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20203 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98217 ENTREZGENE
NCBI Gene 20203 ENTREZGENE
Pfam EF-hand_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen S100b PhenoGen
PROSITE EF_HAND_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S100_CABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART EFh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S_100 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt P50114 ENTREZGENE
  Q3UY00 ENTREZGENE, UniProtKB/TrEMBL
  S100B_MOUSE UniProtKB/Swiss-Prot