Pgk1 (phosphoglycerate kinase 1) - Rat Genome Database

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Gene: Pgk1 (phosphoglycerate kinase 1) Mus musculus
Analyze
Symbol: Pgk1
Name: phosphoglycerate kinase 1
RGD ID: 11088
MGI Page MGI
Description: Enables phosphoglycerate kinase activity. Involved in canonical glycolysis and gluconeogenesis. Acts upstream of or within glycolytic process. Is active in cytosol. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; respiratory system; and sensory organ. Human ortholog(s) of this gene implicated in hemolytic anemia and phosphoglycerate kinase 1 deficiency. Orthologous to human PGK1 (phosphoglycerate kinase 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: MGC118097; Pgk-; Pgk-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm13724   Gm21006   Gm21007   Gm5537   Gm7466   Pgk1-ps1   Pgk1-ps2   Pgk1-ps3   Pgk1-rs6  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X105,230,706 - 105,247,305 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX105,230,706 - 105,247,305 (+)EnsemblGRCm39 Ensembl
GRCm38X106,187,100 - 106,203,699 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX106,187,100 - 106,203,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X103,382,463 - 103,399,038 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X102,389,843 - 102,406,418 (+)NCBIMGSCv36mm8
CeleraX93,040,533 - 93,057,028 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX47.36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(R,R,R)-alpha-tocopherol  (ISO)
(Z)-3-butylidenephthalide  (ISO)
1,10-phenanthroline  (ISO)
1,2,4-trimethylbenzene  (ISO)
1,2-dimethylhydrazine  (EXP)
1,4-benzoquinone  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,6-di-tert-butyl-4-methylphenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-chloro-7-iodoquinolin-8-ol  (ISO)
6-propyl-2-thiouracil  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-naphthoflavone  (ISO)
alpha-Zearalanol  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
amphotericin B  (ISO)
antimycin A  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
Aroclor 1254  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
Azaspiracid  (ISO)
azoxystrobin  (ISO)
beauvericin  (ISO)
benzatropine  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (EXP,ISO)
bromobenzene  (ISO)
buspirone  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP,ISO)
celastrol  (EXP)
chlorohydrocarbon  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clozapine  (ISO)
cobalt dichloride  (ISO)
cobalt(2+) sulfate  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
delphinidin  (ISO)
desferrioxamine B  (ISO)
dexamethasone  (EXP)
dextran sulfate  (EXP)
diallyl trisulfide  (ISO)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (ISO)
dihydroartemisinin  (ISO)
dimercaprol  (ISO)
dioxygen  (EXP,ISO)
diuron  (ISO)
dopamine  (ISO)
doxorubicin  (ISO)
enniatin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
ethyl methanesulfonate  (ISO)
fenoldopam  (ISO)
ferric ammonium citrate  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
FR900359  (ISO)
furan  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glyphosate  (EXP,ISO)
graphite  (ISO)
haloperidol  (ISO)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
imidacloprid  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (ISO)
lithocholic acid  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methimazole  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
metyrapone  (ISO)
miconazole  (EXP)
Monobutylphthalate  (EXP)
motexafin gadolinium  (ISO)
Muraglitazar  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nickel atom  (ISO)
nickel dichloride  (EXP,ISO)
nickel sulfate  (EXP,ISO)
niclosamide  (ISO)
nitrofen  (ISO)
NMN zwitterion  (EXP)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
ozone  (EXP,ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP,ISO)
phenobarbital  (ISO)
phenylpropanolamine  (EXP)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
prostaglandin A1  (EXP)
quartz  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
Soman  (ISO)
sulfadimethoxine  (ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
temozolomide  (ISO)
Tesaglitazar  (ISO)
tetraethylenepentamine  (ISO)
thapsigargin  (ISO)
thiabendazole  (ISO)
thimerosal  (ISO)
thiram  (ISO)
triadimefon  (ISO)
trimellitic anhydride  (EXP)
triphenyl phosphate  (ISO)
Triptolide  (EXP)
trovafloxacin  (ISO)
tungsten  (EXP)
tunicamycin  (ISO)
undecane  (ISO)
valproic acid  (ISO)
vandetanib  (ISO)
vorinostat  (ISO)
Yessotoxin  (ISO)
zearalenone  (EXP)
zinc acetate  (ISO)
zinc atom  (ISO)
zinc dichloride  (ISO)
zinc sulfate  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IBA,IDA,ISO)
extracellular space  (IEA,ISO)
membrane raft  (IEA,ISO)
mitochondrial matrix  (ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phosphoglycerate kinase deficiency: another cause of recurrent myoglobinuria. DiMauro S, etal., Ann Neurol. 1983 Jan;13(1):11-9.
2. The identification of a recurrent phosphoglycerate kinase mutation associated with chronic haemolytic anaemia and neurological dysfunction in a family from USA. Flanagan JM, etal., Br J Haematol. 2006 Jul;134(2):233-7. Epub 2006 Jun 1.
3. Close linkage of the murine locus bare patches to the X-linked visual pigment gene: implications for mapping human X-linked dominant chondrodysplasia punctata. Herman GE and Walton SJ, Genomics 1990 Jul;7(3):307-12.
4. A candidate spermatogenesis gene on the mouse Y chromosome is homologous to ubiquitin-activating enzyme E1. Kay GF, etal., Nature 1991 Dec 12;354(6353):486-9.
5. Influence of beta,gamma-methyleneadenosine 5'-triphosphate and 2-phosphoglycerate on rat liver phosphoglycerate kinase. Lavoinne A Biochimie. 1986 Apr;68(4):569-74.
6. Kinetic studies of the reaction mechanism of rat liver phosphoglycerate kinase in the direction of ADP utilization. Lavoinne A, etal., Biochimie. 1983 Mar;65(3):211-20.
7. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
8. MGDs mouse GO annotations MGD data from the GO Consortium
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
11. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
12. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Monochloroacetic acid inhibits liver gluconeogenesis by inactivating glyceraldehyde-3-phosphate dehydrogenase. Sakai A, etal., Chem Res Toxicol. 2005 Feb;18(2):277-82.
Additional References at PubMed
PMID:597862   PMID:710889   PMID:943046   PMID:1181221   PMID:1360278   PMID:1380672   PMID:1543904   PMID:1572636   PMID:1674728   PMID:1675191   PMID:1679744   PMID:1685478  
PMID:1740345   PMID:1772416   PMID:1879353   PMID:1889815   PMID:1916827   PMID:1973380   PMID:1974879   PMID:1975492   PMID:2034278   PMID:2034279   PMID:2055107   PMID:2166582  
PMID:2298243   PMID:2561974   PMID:2563174   PMID:2571569   PMID:2573045   PMID:2721933   PMID:2829366   PMID:2899541   PMID:2903046   PMID:2919177   PMID:3082971   PMID:3224832  
PMID:3243423   PMID:3243547   PMID:3440520   PMID:3525226   PMID:3542714   PMID:4262895   PMID:4817529   PMID:6469287   PMID:6628991   PMID:6683503   PMID:6852525   PMID:7203559  
PMID:7510422   PMID:7529677   PMID:7777057   PMID:7805729   PMID:7874112   PMID:7892649   PMID:7916682   PMID:7959788   PMID:7994075   PMID:8012115   PMID:8054976   PMID:8094303  
PMID:8111133   PMID:8156917   PMID:8176360   PMID:8332901   PMID:8432533   PMID:8441629   PMID:8530024   PMID:8625802   PMID:8662942   PMID:8752009   PMID:8769643   PMID:8825640  
PMID:8872469   PMID:8872477   PMID:8889548   PMID:8921375   PMID:8935990   PMID:9009199   PMID:9298902   PMID:9335338   PMID:9352491   PMID:9606183   PMID:9608738   PMID:9730605  
PMID:9736774   PMID:10213084   PMID:10349636   PMID:10359786   PMID:10922068   PMID:11013082   PMID:11042159   PMID:11072798   PMID:11076861   PMID:11130727   PMID:11217851   PMID:11331305  
PMID:11381139   PMID:11461004   PMID:11691837   PMID:12149478   PMID:12466851   PMID:12477932   PMID:14681479   PMID:14733918   PMID:15104360   PMID:15448183   PMID:15648052   PMID:15665293  
PMID:15733677   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16510872   PMID:16680199   PMID:16824955   PMID:16966370   PMID:16980619   PMID:17114649   PMID:17248765   PMID:17626619  
PMID:17913788   PMID:18228199   PMID:18307411   PMID:18425126   PMID:18607772   PMID:18662986   PMID:18814280   PMID:19571810   PMID:19643083   PMID:19723774   PMID:19825988   PMID:19877281  
PMID:20185832   PMID:20399150   PMID:20731664   PMID:21267068   PMID:21270129   PMID:21349853   PMID:21565611   PMID:21873635   PMID:22162090   PMID:22387002   PMID:22496890   PMID:22573614  
PMID:22654668   PMID:22905379   PMID:22921202   PMID:22925884   PMID:23115268   PMID:23313125   PMID:23754746   PMID:24457600   PMID:26356530   PMID:26416771   PMID:27189088   PMID:27215380  
PMID:27325674   PMID:27471261   PMID:27694478   PMID:27782176   PMID:27997827   PMID:28209736   PMID:28245920   PMID:28378742   PMID:28426667   PMID:28635043   PMID:28671696   PMID:28680878  
PMID:29382714   PMID:30068389   PMID:30174313   PMID:30333137   PMID:30457570   PMID:30562941   PMID:30595499   PMID:30834655   PMID:30842444   PMID:31040226   PMID:31105007   PMID:31142573  
PMID:31167115   PMID:31361595   PMID:32325033   PMID:32554809   PMID:32968282   PMID:33059001   PMID:33274589   PMID:33540482   PMID:33913476   PMID:34321999   PMID:35726058   PMID:35920200  
PMID:36114006   PMID:36220812   PMID:36293380   PMID:36417873   PMID:36963288   PMID:37142655   PMID:37249790   PMID:37301463   PMID:37839992   PMID:39080660  


Genomics

Comparative Map Data
Pgk1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X105,230,706 - 105,247,305 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX105,230,706 - 105,247,305 (+)EnsemblGRCm39 Ensembl
GRCm38X106,187,100 - 106,203,699 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX106,187,100 - 106,203,699 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X103,382,463 - 103,399,038 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X102,389,843 - 102,406,418 (+)NCBIMGSCv36mm8
CeleraX93,040,533 - 93,057,028 (+)NCBICelera
Cytogenetic MapXDNCBI
cM MapX47.36NCBI
PGK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X78,104,248 - 78,129,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX77,910,739 - 78,129,295 (+)EnsemblGRCh38hg38GRCh38
GRCh37X77,359,745 - 77,384,792 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X77,246,425 - 77,268,980 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X77,165,913 - 77,188,467NCBI
CeleraX77,600,747 - 77,623,405 (+)NCBICelera
Cytogenetic MapXq21.1NCBI
HuRefX70,945,945 - 70,968,603 (+)NCBIHuRef
CHM1_1X77,252,363 - 77,275,021 (+)NCBICHM1_1
T2T-CHM13v2.0X76,539,329 - 76,564,376 (+)NCBIT2T-CHM13v2.0
Pgk1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X75,336,988 - 75,352,962 (+)NCBIGRCr8
mRatBN7.2X71,271,454 - 71,287,429 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX71,271,440 - 71,287,418 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX72,780,371 - 72,796,345 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X76,280,383 - 76,296,357 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X73,843,195 - 73,859,169 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X77,263,399 - 77,279,373 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX77,263,359 - 77,279,367 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X56,383,459 - 56,399,433 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X94,324,219 - 94,340,193 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X94,397,574 - 94,413,625 (+)NCBI
CeleraX72,583,654 - 72,599,628 (+)NCBICelera
Cytogenetic MapXq22NCBI
Pgk1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555571,566,534 - 1,584,799 (+)NCBIChiLan1.0ChiLan1.0
PGK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X77,679,278 - 77,701,483 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X77,682,484 - 77,708,088 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X67,280,269 - 67,302,307 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X77,391,639 - 77,413,786 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX77,391,805 - 77,414,459 (+)Ensemblpanpan1.1panPan2
PGK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X60,374,743 - 60,396,244 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX60,374,754 - 60,423,947 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX51,387,842 - 51,409,348 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X61,613,473 - 61,634,977 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX61,613,477 - 61,690,699 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X59,319,607 - 59,341,115 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X60,929,381 - 60,951,098 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X60,517,684 - 60,539,186 (+)NCBIUU_Cfam_GSD_1.0
Pgk1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X53,965,864 - 53,989,650 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936547286,267 - 310,062 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936547286,267 - 310,062 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX62,187,434 - 62,210,705 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X62,187,472 - 62,210,321 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X71,339,754 - 71,351,768 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig CytomapXq1.2NCBI
PGK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X67,072,029 - 67,093,881 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606714,418,994 - 14,440,951 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pgk1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248362,653,474 - 2,676,766 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248362,657,320 - 2,676,124 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pgk1
283 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:442
Count of miRNA genes:284
Interacting mature miRNAs:330
Transcripts:ENSMUST00000081593, ENSMUST00000133559, ENSMUST00000135949
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13208552Wght12_mweight 12 (mouse)X94043606149782996Mouse
4141803Lmr30_mleishmaniasis resistance 30 (mouse)Not determined85062606119062720Mouse
13208556Lgth14_mbody length 14 (mouse)X94043606149782996Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1357823Spha3_msperm head anomaly 3 (mouse)Not determinedX102055848162758941Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse

Markers in Region
DXMit64  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X106,185,674 - 106,185,804UniSTSGRCm38
MGSCv37X103,381,013 - 103,381,143UniSTSGRCm37
CeleraX93,039,141 - 93,039,269UniSTS
Cytogenetic MapXC-DUniSTS
cM MapX45.0UniSTS
Whitehead GeneticX31.7UniSTS
DXMit64.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X106,185,775 - 106,185,984UniSTSGRCm38
MGSCv37X103,381,114 - 103,381,323UniSTSGRCm37
CeleraX93,039,240 - 93,039,449UniSTS
Cytogenetic MapXC-DUniSTS
cM MapX45.0UniSTS
cM MapX UniSTS
Whitehead GeneticX31.7UniSTS
Pgk1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37X103,382,541 - 103,382,886UniSTSGRCm37
CeleraX93,040,595 - 93,040,940UniSTS
Cytogenetic MapXC-DUniSTS
cM MapX45.0UniSTS
Pgk1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXC-DUniSTS
Pgk1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X106,187,202 - 106,187,547UniSTSGRCm38
MGSCv37X103,382,541 - 103,382,886UniSTSGRCm37
CeleraX93,040,595 - 93,040,940UniSTS
Cytogenetic MapXC-DUniSTS
cM MapX45.0UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_008828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK133877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167459 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK177443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK188712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200341 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK201156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC032167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083355 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC108372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE981957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE986846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX469914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY292706 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF437325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M15668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M18735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X55309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000081593   ⟹   ENSMUSP00000080302
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX105,230,706 - 105,247,305 (+)Ensembl
GRCm38.p6 EnsemblX106,187,100 - 106,203,699 (+)Ensembl
Ensembl Acc Id: ENSMUST00000133559
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX105,235,234 - 105,238,382 (+)Ensembl
GRCm38.p6 EnsemblX106,191,628 - 106,194,776 (+)Ensembl
Ensembl Acc Id: ENSMUST00000135949   ⟹   ENSMUSP00000138706
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX105,230,769 - 105,247,267 (+)Ensembl
GRCm38.p6 EnsemblX106,187,163 - 106,203,661 (+)Ensembl
RefSeq Acc Id: NM_008828   ⟹   NP_032854
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X105,230,706 - 105,247,305 (+)NCBI
GRCm38X106,187,100 - 106,203,699 (+)NCBI
MGSCv37X103,382,463 - 103,399,038 (+)RGD
CeleraX93,040,533 - 93,057,028 (+)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NP_032854   ⟸   NM_008828
- UniProtKB: Q3UKV8 (UniProtKB/Swiss-Prot),   Q3TPE6 (UniProtKB/Swiss-Prot),   Q5XJE7 (UniProtKB/Swiss-Prot),   P09411 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000138706   ⟸   ENSMUST00000135949
Ensembl Acc Id: ENSMUSP00000080302   ⟸   ENSMUST00000081593

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P09411-F1-model_v2 AlphaFold P09411 1-417 view protein structure

Promoters
RGD ID:6846079
Promoter ID:MM_KWN:61521
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000044166,   OTTMUST00000044168
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X103,381,446 - 103,382,672 (+)MPROMDB
RGD ID:6846080
Promoter ID:MM_KWN:61522
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   MEF_B6
Transcripts:OTTMUST00000044167
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X103,386,121 - 103,387,367 (+)MPROMDB
RGD ID:6849292
Promoter ID:MM_XEF:7915
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:NM_001022656,   NM_001147852,   NM_057328,   NM_210177
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X103,389,751 - 103,390,251 (+)MPROMDB
RGD ID:13681188
Promoter ID:EPDNEW_M24743
Type:initiation region
Name:Pgk1_1
Description:Mus musculus phosphoglycerate kinase 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X106,187,207 - 106,187,267EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97555 AgrOrtholog
Ensembl Genes ENSMUSG00000062070 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000081593 ENTREZGENE
  ENSMUST00000081593.13 UniProtKB/Swiss-Prot
  ENSMUST00000135949.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1260 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Phosphoglycerate_kinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphoglycerate_kinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphoglycerate_kinase_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Phosphoglycerate_kinase_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18655 UniProtKB/Swiss-Prot
MGD MGI:97555 ENTREZGENE
NCBI Gene 18655 ENTREZGENE
PANTHER PHOSPHOGLYCERATE KINASE 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11406 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PGK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pgk1 PhenoGen
PIRSF Pgk UniProtKB/Swiss-Prot
PRINTS PHGLYCKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE PGLYCERATE_KINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53748 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B0LAA9_MOUSE UniProtKB/TrEMBL
  P09411 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TPE6 ENTREZGENE
  Q3UKV8 ENTREZGENE
  Q5XJE7 ENTREZGENE
  S4R2M7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3TPE6 UniProtKB/Swiss-Prot
  Q3UKV8 UniProtKB/Swiss-Prot
  Q5XJE7 UniProtKB/Swiss-Prot