2610027F03Rik (RIKEN cDNA 2610027F03 gene) - Rat Genome Database

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Gene: 2610027F03Rik (RIKEN cDNA 2610027F03 gene) Mus musculus
Analyze
Symbol: 2610027F03Rik
Name: RIKEN cDNA 2610027F03 gene
RGD ID: 11084345
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,542,383 - 120,691,296 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,549,469 - 120,618,132 (+)EnsemblGRCm39 Ensembl
GRCm381120,614,654 - 120,763,567 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,621,740 - 120,690,403 (+)EnsemblGRCm38mm10GRCm38
Celera1123,272,410 - 123,421,671 (+)NCBICelera
Cytogenetic Map1E2.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575   PMID:34488445  


Genomics

Variants

.
Variants in 2610027F03Rik
5199 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
27095931Pglq1_mpelvic girdle length QTL 1, 5 week (mouse)175976637128527737Mouse
27095928Pglq6_mpelvic girdle length QTL 6, 10 week (mouse)175976637148775742Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
13452395Leusq2_mleucocytosis susceptibility QTL 2 (mouse)180245593126386517Mouse
1301350Nidd4k_mNidd4 on KK-A (mouse)Not determined782291982147125370Mouse
1357439Popoa_mpremature ovulation and primary oocyte arrest (mouse)Not determined182643189135615379Mouse
4141329Mleu1_mmyeloid leukemia survival 1 (mouse)Not determined89786512123786512Mouse
15039333Nmrs1_mNAFLD-associated magnetic resonance shift 1 (mouse)189786512123786512Mouse
1357760Synch3_msynechia 3 (mouse)Not determined192901442126901550Mouse
4141627Bwq7_mbody weight, QTL 7 (mouse)Not determined192940909124497796Mouse
12879491Hfnq1_mhair follicle number QTL 1 (mouse)193310310123636759Mouse
27095913Scvln2_msacral vertebrae length 2, 5 week (mouse)194127725148775742Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
27226779Tibl1_mtibia length 1, 5 week (mouse)195527725162027569Mouse
1301123Cd8mts2_mCD8 memory T cell subset 2 (mouse)Not determined196618386130618557Mouse
1301753Tir3a_mtrypansomiasis infection response 3a (mouse)Not determined197053986131054190Mouse
13452398Leusq5_mleucocytosis susceptibility QTL 5 (mouse)198474785126386517Mouse
1301536Pbbcp1_mperipheral blood B cell percentage 1 (mouse)Not determined199507660133507845Mouse
1301193Lxw3_mlupus BXSB x NZW 3 (mouse)Not determined1102968534136968667Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
12790994Aaaq1_maortic arch angle QTL 1 (mouse)1109495943143495943Mouse
1301979Melm1_mmelanoma modifier 1 (mouse)Not determined1109638262143638479Mouse
1357600Obq17_mobesity QTL 17 (mouse)Not determined1110553179144553298Mouse
10401248Bglu12_mblood glucose level 12 (mouse)Not determined1110553179144553298Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1301249Sbw1_msplenomegaly-NZB x NZW 1 (mouse)Not determined1112131005146131085Mouse
10045640Jckm4_mjuvenile cystic kidney modifier 4 (mouse)Not determined1116290836150290937Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
1302161Exq2_mexploratory and excitability QTL 2 (mouse)Not determined1118099720152099816Mouse


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_001779376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779380 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001779387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004936317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_387332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_878468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_878474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_878477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC101684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC133286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK011565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000186982
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,549,469 - 120,618,132 (+)Ensembl
GRCm38.p6 Ensembl1120,621,740 - 120,690,403 (+)Ensembl
RefSeq Acc Id: XR_001779376
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,618,133 (+)NCBI
GRCm381120,685,415 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779379
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,618,133 (+)NCBI
GRCm381120,685,415 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779380
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,691,296 (+)NCBI
GRCm381120,685,415 - 120,763,567 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779381
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,542,404 - 120,618,133 (+)NCBI
GRCm381120,614,675 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779383
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,549,328 - 120,618,133 (+)NCBI
GRCm381120,621,599 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779384
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,549,329 - 120,618,133 (+)NCBI
GRCm381120,621,600 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779385
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,691,296 (+)NCBI
GRCm381120,685,415 - 120,763,567 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779386
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,617,831 (+)NCBI
GRCm381120,685,415 - 120,690,102 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001779387
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,618,133 (+)NCBI
GRCm381120,685,415 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936315
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,674,880 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936316
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,691,296 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004936317
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,613,144 - 120,661,703 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387323
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,542,383 - 120,618,133 (+)NCBI
GRCm381120,614,654 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387324
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,549,330 - 120,618,133 (+)NCBI
GRCm381120,621,601 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387328
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,542,383 - 120,618,133 (+)NCBI
GRCm381120,614,654 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387329
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,542,412 - 120,618,133 (+)NCBI
GRCm381120,614,683 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387331
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,542,383 - 120,618,133 (+)NCBI
GRCm381120,614,654 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_387332
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,598,940 - 120,618,133 (+)NCBI
GRCm381120,671,211 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878468
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,542,383 - 120,618,133 (+)NCBI
GRCm381120,614,654 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878474
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,542,383 - 120,618,133 (+)NCBI
GRCm381120,614,654 - 120,690,404 (+)NCBI
Sequence:
RefSeq Acc Id: XR_878477
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,549,330 - 120,618,133 (+)NCBI
GRCm381120,621,600 - 120,690,404 (+)NCBI
Sequence:
Promoters
RGD ID:15092191
Promoter ID:EPDNEWNC_M93
Type:single initiation site
Name:2610027F03Rik_1
Description:RIKEN cDNA 2610027F03 gene [Source:MGISymbol;Acc:MGI:1917154]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381120,621,730 - 120,621,790EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099957 Ensembl
MGD MGI:1917154 ENTREZGENE
NCBI Gene 2610027F03Rik ENTREZGENE
PhenoGen 2610027F03Rik PhenoGen