4732465J04Rik (RIKEN cDNA 4732465J04 gene) - Rat Genome Database

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Gene: 4732465J04Rik (RIKEN cDNA 4732465J04 gene) Mus musculus
Analyze
Symbol: 4732465J04Rik
Name: RIKEN cDNA 4732465J04 gene
RGD ID: 11083049
MGI Page MGI
Description: Is expressed in several structures, including heart; intestine; liver; lung; and metanephros.
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391095,608,995 - 95,630,846 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1095,581,939 - 95,633,098 (+)EnsemblGRCm39 Ensembl
GRCm381095,773,133 - 95,794,984 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1095,746,077 - 95,797,236 (+)EnsemblGRCm38mm10GRCm38
MGSCv371095,241,551 - 95,259,870 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361095,222,259 - 95,224,668 (+)NCBIMGSCv36mm8
Celera1097,754,564 - 97,772,907 (+)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1049.53NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:14610273   PMID:16141072   PMID:16141073   PMID:17062627   PMID:24316575   PMID:29716997  


Genomics

Variants

.
Variants in 4732465J04Rik
898 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:125
Count of miRNA genes:122
Interacting mature miRNAs:125
Transcripts:ENSMUST00000084674
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108235478116190980Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018259333125575232Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1018875748129635869Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021408154114217230Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024675898121035905Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039175996129635869Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039175996129635869Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1044876096115935905Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045476096120635905Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059335822122335905Mouse
13208560Wght9_mweight 9 (mouse)1059835822120835905Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1063935779115935905Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106549093899491121Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106549093899491121Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106549093899491121Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067335830111735905Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1067835830124835905Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069735830130430862Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073506901107507047Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1073987216125515907Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1073987216125515907Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075338568109338767Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75338568109338767Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075338568109338767Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078381268112381268Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082078412116078412Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082309418116309657Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082309418116309657Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082309418116309657Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082309418116309657Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082309418116309657Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082309418116309657Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082392803116392952Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83017003117017136Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084079650122041528Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084079650122041528Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84079650122041528Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84079650122041528Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84079650122041528Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084079650122041528Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085454982118497353Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086713608120713756Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1086909085120909229Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1086909085120909229Mouse
1357831Igf1sl2_mIGF-1 serum levels 2 (mouse)Not determined108769412799936278Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088088254122088391Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined88836456122836456Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1089927651123927754Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090506901125575232Mouse
13208554Lgth11_mbody length 11 (mouse)1090835862120835905Mouse
1302162Ednrbm1_mendothelin receptor type B modifier 1 (mouse)Not determined1092127383103713756Mouse
12910821Ogrq4_moverall growth rate QTL 4 (mouse)1092169056107319989Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92729941111568319Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000185499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,756 - 95,633,098 (+)Ensembl
GRCm38.p6 Ensembl1095,778,917 - 95,797,236 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187483
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,581,939 - 95,632,693 (+)Ensembl
GRCm38.p6 Ensembl1095,746,077 - 95,796,831 (+)Ensembl
RefSeq Acc Id: ENSMUST00000240939
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,769 - 95,630,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241215
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,615,821 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241765
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,767 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000241950
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,769 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242377
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,767 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000242589
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,769 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,615,847 - 95,630,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243248
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,762 - 95,630,855 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,615,811 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000243970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,769 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244653
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,764 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244665
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,779 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000244739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,618,542 - 95,630,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000245698
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,779 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246351
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,769 - 95,630,846 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,769 - 95,630,844 (+)Ensembl
RefSeq Acc Id: ENSMUST00000246993
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1095,614,769 - 95,630,844 (+)Ensembl
RefSeq Acc Id: XR_380952
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391095,608,995 - 95,630,846 (+)NCBI
GRCm381095,773,133 - 95,794,984 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC36311 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:15093831
Promoter ID:EPDNEWNC_M1739
Type:multiple initiation site
Name:4732465J04Rik_1
Description:RIKEN cDNA 4732465J04 gene [Source:MGISymbol;Acc:MGI:3041208]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381095,778,907 - 95,778,967EPDNEWNC
RGD ID:8673128
Promoter ID:EPDNEW_M14595
Type:initiation region
Name:AK165804_1
Description:n/a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381095,778,907 - 95,778,967EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000101517 Ensembl
MGD MGI:3041208 ENTREZGENE
NCBI Gene 4732465J04Rik ENTREZGENE
PhenoGen 4732465J04Rik PhenoGen
UniProt Q8C686_MOUSE UniProtKB/TrEMBL