Gm3693 (predicted gene 3693) - Rat Genome Database

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Gene: Gm3693 (predicted gene 3693) Mus musculus
Analyze
Symbol: Gm3693
Name: predicted gene 3693
RGD ID: 11082695
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391281,275,058 - 81,290,032 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1281,275,058 - 81,290,032 (+)EnsemblGRCm39 Ensembl
GRCm381281,228,284 - 81,243,258 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1281,228,284 - 81,243,258 (+)EnsemblGRCm38mm10GRCm38
MGSCv371282,329,271 - 82,344,245 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1282,696,613 - 82,708,217 (+)NCBICelera
Cytogenetic Map12D1NCBI
cM Map1237.47NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:24316575  


Genomics

Variants

.
Variants in Gm3693
491 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:128
Interacting mature miRNAs:130
Transcripts:ENSMUST00000182077
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1301689Skull18_mskull morphology 18 (mouse)Not determined1273887422107887526Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
1301868Fbgl1_mfasting blood glucose 1 (mouse)Not determined127904016483162211Mouse
1301926Adip6_madiposity 6 (mouse)Not determined1273887422107887526Mouse
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
4141335W6q10_mweight 6 weeks QTL 10 (mouse)Not determined80956708113383533Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
4141610Tailaq1_mtail length adjusted QTL 1 (mouse)Not determined80956708113383533Mouse
4141738Tgq23_mtriglyceride QTL 23 (mouse)Not determined72112877106112877Mouse
4142401Egq10_mearly growth QTL 10 (mouse)Not determined80956708113383533Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
13524842Ppiq10a_mprepulse inhibition QTL 10a (mouse)1277512220111512220Mouse
13524849Ppiq11a_mprepulse inhibition QTL 11a (mouse)1280989143114989143Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
39128213Lwq23_mliver weight QTL 10 (mouse)1280956708113383533Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000182077
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1281,275,058 - 81,290,032 (+)Ensembl
GRCm38.p6 Ensembl1281,228,284 - 81,243,258 (+)Ensembl
RefSeq Acc Id: NR_152198
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391281,275,058 - 81,290,032 (+)NCBI
GRCm381281,228,284 - 81,243,258 (+)NCBI
Sequence:
Promoters
RGD ID:15094158
Promoter ID:EPDNEWNC_M2061
Type:single initiation site
Name:Gm3693_1
Description:predicted gene 3693 [Source:MGI Symbol;Acc:MGI:3781869]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381281,228,296 - 81,228,356EPDNEWNC
RGD ID:8678686
Promoter ID:EPDNEW_M17374
Type:single initiation site
Name:Gm3693_1
Description:Mus musculus predicted gene 3693 , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381281,228,296 - 81,228,356EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000098128 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000182077 ENTREZGENE
MGD MGI:3781869 ENTREZGENE
NCBI Gene Gm3693 ENTREZGENE
PhenoGen Gm3693 PhenoGen
RNAcentral URS0000769031 RNACentral