E130119H09Rik (RIKEN cDNA E130119H09 gene)

Gene: E130119H09Rik (RIKEN cDNA E130119H09 gene) Mus musculus

Analyze

Symbol:

E130119H09Rik

Name:

RIKEN cDNA E130119H09 gene

RGD ID:

11082103

MGI Page

MGI

Description:

Is expressed in eye and lens.

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

VALIDATED

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	54,066,275 - 54,069,760 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	54,064,673 - 54,069,808 (-)	Ensembl		GRCm39 Ensembl
GRCm38	13	53,912,263 - 53,915,748 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	53,912,263 - 53,915,748 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	54,007,632 - 54,011,117 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	53,919,797 - 53,923,282 (-)	NCBI		MGSCv36	mm8
Celera	13	54,989,501 - 54,993,450 (-)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

Cellular Component

cellular_component (ND)

Molecular Function

molecular_function (ND)

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:21267068

Genomics

Variants

Variants in E130119H09Rik
92 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
26884393	Humsd7_m	humerus midshaft diameter 7, 16 week (mouse)					13	3950000	76048119	Mouse
1301015	Sysbp2_m	systolic blood pressure 2 (mouse)			Not determined		13	20477612	59821605	Mouse
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
1357591	Tesq1_m	testis weight QTL 1 (mouse)			Not determined		13	20615512	55720517	Mouse
4142009	Pregq3_m	pregnancy QTL 3 (mouse)			Not determined		13	20615512	72385189	Mouse
10045618	Heal17_m	wound healing/regeneration 17 (mouse)			Not determined		13	20746939	54747056	Mouse
4142489	Ath25_m	atherosclerosis 25 (mouse)			Not determined			25836529	59836529	Mouse
10401111	Pgia40_m	proteoglycan induced arthritis 40 (mouse)			Not determined		13	27918469	61918560	Mouse
1300710	Pcd4ts2_m	p-glycoprotein positive CD4 T cell subset 2 (mouse)			Not determined		13	28210442	62210544	Mouse
1357802	Vtbt15_m	vertebral trabecular bone trait 15 (mouse)			Not determined		13	28217379	62217515	Mouse
10045621	Heal21_m	wound healing/regeneration 21 (mouse)			Not determined		13	28217379	62217515	Mouse
10755533	Chol18_m	cholesterol 18 (mouse)					13	30969467	64969467	Mouse
10755517	Chol15_m	cholesterol 15 (mouse)					13	30969467	64969467	Mouse
12738439	Twq4_m	testis weight QTL 4 (mouse)					13	31129110	65129110	Mouse
14696729	Kidlq2_m	kidney weight, left QTL 2 (mouse)					13	31344736	65344736	Mouse
1301299	Sluc23_m	susceptibility to lung cancer 23 (mouse)			Not determined		13	34921943	68922081	Mouse
10412235	Scgq5_m	spontaneous crescentic glomerulonephritis QTL 5 (mouse)			Not determined		13	36060908	96239162	Mouse
1357587	Pfat3_m	predicted fat percentage 3 (mouse)			Not determined		13	36101530	70101640	Mouse
1301734	Acsns2_m	Angiostrongylus costaricensis nematode susceptibility 2 (mouse)			Not determined		13	36101530	70101640	Mouse
1300561	Heal7_m	wound healing/regeneration 7 (mouse)			Not determined		13	36144820	70144904	Mouse
1300862	Cfbw5_m	cystic fibrosis body weight 5 (mouse)			Not determined		13	38720358	72720517	Mouse
1300985	Bmd13_m	bone mineral density 13 (mouse)			Not determined		13	39629249	73629397	Mouse
1302157	Bwem2_m	body weight day 30 males 2 (mouse)			Not determined		13	39629249	73629397	Mouse
1301801	Cpfd5_m	cerebellum pattern fissures (mouse)			Not determined		13	39629249	73629397	Mouse
15039353	Nmrs35_m	NAFLD-associated magnetic resonance shift 35 (mouse)					13	40588253	74588253	Mouse
1300668	Pas10_m	pulmonary adenoma susceptibility 10 (mouse)			Not determined		13	41489042	75489158	Mouse
4142331	Bxs6_m	BXSB/MpJ autoimmune nephritis 6 (mouse)			Not determined			45210442	83744746	Mouse
10412109	Bxs7_m	BXSB/MpJ autoimmune nephritis 7 (mouse)			Not determined		13	45210442	83744746	Mouse
26884396	Humsd4_m	humerus midshaft diameter 4, 10 week (mouse)					13	47853476	73148119	Mouse
4142372	Moo2_m	modifier of Odc2 (mouse)			Not determined		X	50318411	84318559	Mouse
1301666	Eae13_m	susceptibility to experimental allergic encephalomyelitis 13 (mouse)			Not determined		13	50318411	84318559	Mouse
1300573	Elsgp2_m	elevated serum gp70 2 (mouse)			Not determined		13	50616828	84617027	Mouse
14746975	Manh74_m	mandible shape 74 (mouse)					13	52477269	86477269	Mouse
25671382	Hrsq4_m	host response to SARS QTL 4, vascular cuffing (mouse)					13	52881651	54992738	Mouse
1302073	Pgct1_m	primordial germ cell tumor locus 1 (mouse)			Not determined		13	53820783	87820897	Mouse

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NR_152124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC165273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK021396	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CT030176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSMUST00000223176

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	54,066,260 - 54,069,808 (-)	Ensembl
GRCm38.p6 Ensembl	13	53,912,263 - 53,915,748 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243069

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	54,065,761 - 54,069,790 (-)	Ensembl

RefSeq Acc Id:

ENSMUST00000243613

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	54,064,673 - 54,069,782 (-)	Ensembl

RefSeq Acc Id:

NR_152124

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	54,066,275 - 54,069,760 (-)	NCBI
GRCm38	13	53,912,263 - 53,915,748 (-)	NCBI

Sequence:

show sequence

GACCTTGCATAGCTAGCCTTGCCATGCTTTGTTGGTCTCGAGTCTTCACTGATCTTTACTTCTT
TGGGAGAGGCATGGCAGAGTACTTCTGGTTCTGGTCGCTCCCACAGACTTGTCCTGATTCGGTG
GAGGCCTGGCTGTTTCTGCTTGATCGTGCCACCACTGCTGATTTGTGTTTGTGACGCTACTGAA
CTGGACTGCTGCTATCCTGACAATGGAGATCGGAATGACTCTAAAATCTACTTCTAAACAGGCT
TCGACTCCAATGCTGCCGTTTCTCGGAGGTCAGGAATCTTTCTTACCCGTCACATCTTCAGTGG
CAGCGTGTCTGCCAAATTGCTCTGTTTTGTTTCATCACAGCATTCACCTCTACCTGACATTTCC
TCGGCTCCTTTGTCATTGGCTGTCTCCCTCTGCTTACACGCCCACTGTGGAAAGCAGTGACTTG
CTTGCCTTGGCTACTACCACAGCCCACAGAGTCGGACTCCTGAAAATCAGAAAACAATCGATTC
GGAAGCACTCACTTCCTAGACTGCCCGTCACTCAGGCTGCCCAGACCCCGACTCCAGACCTGAT
GAGAGTTTCAAGGGAAAGAGAAGATCCAACTGCCTCGTGCTTCTCTCCTTCTTAGCACATTGAG
AAACTGTAGCCTCAAGCCTGAAATCCTTTTATAAGGAGAACGATAGACCAGTTCTGTCAAAAAG
TGATTTCAGTGGTCTCACTGTGGAAGCTCACAGGTTAACTTGCAGGAGTAGAGAATGGAAAGTC
AGCCACCAGAAGCTGAGACGGACAAAGGGGAAGGAGGATGCGGGGAGGTCAATAATGGTGACCA
AAGTGCACAGAGATGGACGGATTAAACCCTTGCATTCCTTGGCGTTGTGTTTCTATAGTATATA
AAAATGTATTATGTATTTCACAAAGCATCAAAATAGAGGAGTTGAAATTTTTCTTTTGAACACA
AATAAATGGTAATTATTG

hide sequence

Promoters

RGD ID:

15094286

Promoter ID:

EPDNEWNC_M2190

Type:

single initiation site

Name:

E130119H09Rik_1

Description:

RIKEN cDNA E130119H09 gene [Source:MGISymbol;Acc:MGI:1925800]

SO ACC ID:

SO:0000170

Source:

EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	53,915,745 - 53,915,805	EPDNEWNC

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000114069	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000223176	ENTREZGENE
MGD	MGI:1925800	ENTREZGENE
NCBI Gene	E130119H09Rik	ENTREZGENE
PhenoGen	E130119H09Rik	PhenoGen
RNAcentral	URS00009B471B	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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