E130018O15Rik (RIKEN cDNA E130018O15 gene) - Rat Genome Database

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Gene: E130018O15Rik (RIKEN cDNA E130018O15 gene) Mus musculus
Analyze
Symbol: E130018O15Rik
Name: RIKEN cDNA E130018O15 gene
RGD ID: 11082048
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39535,536,496 - 35,545,820 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl535,536,496 - 35,545,820 (-)EnsemblGRCm39 Ensembl
GRCm38535,379,152 - 35,388,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl535,379,152 - 35,388,476 (-)EnsemblGRCm38mm10GRCm38
MGSCv37535,721,801 - 35,731,125 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36535,696,013 - 35,705,337 (-)NCBIMGSCv36mm8
Celera532,854,526 - 32,863,850 (-)NCBICelera
Cytogenetic Map5B2- B3NCBI
cM Map518.13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068   PMID:24316575  


Genomics

Variants

.
Variants in E130018O15Rik
393 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:102
Interacting mature miRNAs:102
Transcripts:ENSMUST00000069741
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
10043995Hbnr9_mHeligmosomoides bakeri nematode resistance 9 (mouse)Not determined53348866767488876Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000069741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl535,536,496 - 35,545,820 (-)Ensembl
GRCm38.p6 Ensembl535,379,152 - 35,388,476 (-)Ensembl
RefSeq Acc Id: NR_152157
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39535,536,496 - 35,545,820 (-)NCBI
GRCm38535,379,152 - 35,388,476 (-)NCBI
Sequence:
Protein Sequences
GenBank Protein BAC35392 (Get FASTA)   NCBI Sequence Viewer  
  EDL37482 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences

Promoters
RGD ID:6886502
Promoter ID:EPDNEW_M6702
Type:single initiation site
Name:E130018O15Rik_1
Description:Mus musculus RIKEN cDNA E130018O15 gene , long non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38535,388,483 - 35,388,543EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000055944 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000069741 ENTREZGENE
MGD MGI:3045238 ENTREZGENE
NCBI Gene E130018O15Rik ENTREZGENE
PhenoGen E130018O15Rik PhenoGen
RNAcentral URS0000787699 RNACentral
UniProt Q8BPS2_MOUSE UniProtKB/TrEMBL