Reg3b (regenerating islet-derived 3 beta)

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Gene: Reg3b (regenerating islet-derived 3 beta) Mus musculus

Analyze

Symbol:

Reg3b

Name:

regenerating islet-derived 3 beta

RGD ID:

11057

MGI Page

MGI

Description:

Is expressed in central nervous system; dorsal root ganglion; hypoglossal nerve; and intestine. Orthologous to several human genes including REG3A (regenerating family member 3 alpha); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; 2,4,6-trinitrobenzenesulfonic acid.

Type:

protein-coding

RefSeq Status:

VALIDATED

Also known as:

HIP; P; pancreatitis-associated protein 1; Pap; PAP1; REG; reg III-beta; REG-3-beta; REG-III; regenerating islet-derived protein 3-beta; regenerating islet-derived protein III-beta; RegIII (beta)

RGD Orthologs

Human

Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	REG3A (regenerating family member 3 alpha)	HGNC	Ensembl, HGNC, HomoloGene, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB
Rattus norvegicus (Norway rat):	Reg3b (regenerating family member 3 beta)	HGNC	OrthoMCL, OMA, HomoloGene, Panther, PhylomeDB, OrthoDB, Ensembl
Other homologs ²
Homo sapiens (human):	REG3G (regenerating family member 3 gamma)	HGNC	Inparanoid, OMA, OrthoDB, Panther, PhylomeDB
Homo sapiens (human):	REG1B (regenerating family member 1 beta)	HGNC	Ensembl
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Reg3b (regenerating family member 3 beta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	REG3G (regenerating family member 3 gamma)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Homo sapiens (human):	REG3A (regenerating family member 3 alpha)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|Roundup)
Danio rerio (zebrafish):	si:dkey-241l7.3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	lectin	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:ch211-125e6.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:ch211-125e6.12	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:dkey-241l7.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:dkey-241l7.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:dkey-241l7.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:dkeyp-75b4.10	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:ch211-125e6.11	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	si:dkey-9i23.4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder)
Danio rerio (zebrafish):	zgc:172053	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder)
Caenorhabditis elegans (roundworm):	clec-178	Alliance	DIOPT (Ensembl Compara\|OMA\|PANTHER)
Caenorhabditis elegans (roundworm):	clec-86	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|Roundup)

Latest Assembly:

GRCm38 - Mouse Genome Assembly GRCm38

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	78,347,868 - 78,350,449 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	78,347,640 - 78,350,449 (+)	Ensembl
GRCm38	6	78,370,885 - 78,373,466 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	78,370,657 - 78,373,466 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	78,320,879 - 78,323,460 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	78,300,394 - 78,302,975 (+)	NCBI			mm8
Celera	6	80,394,075 - 80,396,656 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute pancreatitis (ISO)

Brain Injuries (ISO)

Chronic Pancreatitis (ISO)

Experimental Autoimmune Myocarditis (ISO)

Experimental Diabetes Mellitus (IMP)

Experimental Pancreatitis (ISO)

Experimental Pancreatitis, Acute (ISO)

hepatocellular carcinoma (ISO)

liver cirrhosis (ISO)

Peripheral Nerve Injuries (ISO)

pneumonia (ISO)

sciatic neuropathy (ISO)

type 2 diabetes mellitus (ISO)

visual epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP,ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4,6-trinitrobenzenesulfonic acid (EXP)

5-iodotubercidin (ISO)

amitriptyline (ISO)

ammonium chloride (ISO)

antirheumatic drug (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

carbofuran (ISO)

carbon nanotube (EXP)

carvedilol (ISO)

chromium(6+) (EXP)

copper atom (ISO)

copper(0) (ISO)

corticosterone (ISO)

curcumin (EXP)

cyclophosphamide (EXP,ISO)

dextran sulfate (EXP)

diclofenac (EXP)

diethylstilbestrol (ISO)

dimethylarsinic acid (ISO)

doxorubicin (ISO)

flavonoids (ISO)

furan (ISO)

gemcitabine (ISO)

genistein (EXP,ISO)

irinotecan (ISO)

isoprenaline (ISO)

L-arginine (ISO)

lipopolysaccharide (EXP)

methoxychlor (ISO)

milrinone (ISO)

N-methyl-N-nitrosourea (EXP)

naphthalene (ISO)

nitroglycerin (ISO)

paracetamol (EXP)

pirinixic acid (EXP)

progesterone (ISO)

resveratrol (ISO)

sodium dichromate (ISO)

Triptolide (ISO)

troglitazone (ISO)

vinclozolin (ISO)

zalcitabine (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acute-phase response (IEA)

antimicrobial humoral immune response mediated by antimicrobial peptide (IBA)

cell wall disruption in other organism (IBA)

cellular response to drug (ISO)

cellular response to L-arginine (ISO)

cellular response to tumor necrosis factor (ISO)

defense response to Gram-negative bacterium (IDA)

defense response to Gram-positive bacterium (IDA)

estrous cycle (ISO)

female pregnancy (ISO)

inflammatory response (IEA)

midgut development (ISO)

negative regulation of apoptotic process (ISO)

negative regulation of cell death (ISO)

negative regulation of hydrogen peroxide-induced neuron death (ISO)

negative regulation of neuron apoptotic process (ISO)

positive regulation of cell population proliferation (IBA,ISO)

positive regulation of protein phosphorylation (ISO)

response to bacterium (IEP)

response to estradiol (ISO)

response to nutrient levels (ISO)

response to peptide hormone (IBA)

response to starvation (ISO)

Cellular Component

apical part of cell (ISO)

collagen-containing extracellular matrix (HDA)

cytoplasm (ISO)

extracellular region (IEA)

extracellular space (IBA,ISO)

protein-containing complex (ISO)

zymogen granule (ISO)

Molecular Function

carbohydrate binding (IEA)

growth factor binding (ISO)

identical protein binding (ISO)

oligosaccharide binding (IBA)

peptidoglycan binding (IBA)

protein binding (ISO)

signaling receptor activity (IBA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

impaired glucose tolerance (IEA)

References

References - curated


1.	Ampo K, etal., J Neurotrauma. 2009 Oct;26(10):1683-93. doi: 10.1089/neu.2008-0847.
2.	Calderari S, etal., PLoS One. 2014 Feb 26;9(2):e90045. doi: 10.1371/journal.pone.0090045. eCollection 2014.
3.	Christa L, etal., Am J Pathol. 1999 Nov;155(5):1525-33.
4.	Folch-Puy E, etal., J Pathol. 2003 Mar;199(3):398-408.
5.	Kawahara S, etal., Neuroscience. 2011 Feb 23;175:273-80. doi: 10.1016/j.neuroscience.2010.11.020. Epub 2010 Nov 18.
6.	Keim V, etal., Pancreas. 1994 Sep;9(5):606-12.
7.	LaCroix-Fralish ML, etal., Pain. 2011 Aug;152(8):1888-98. doi: 10.1016/j.pain.2011.04.014. Epub 2011 May 10.
8.	Lin YY, etal., Pancreas. 2008 May;36(4):402-10. doi: 10.1097/MPA.0b013e31815f3933.
9.	Meili S, etal., Cell Tissue Res. 2003 Jun;312(3):291-9. Epub 2003 May 23.
10.	MGD and Homologene mouse data transfer
11.	MGD data from the GO Consortium
12.	Namikawa K, etal., Biochem Biophys Res Commun. 2005 Jun 24;332(1):126-34.
13.	Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
14.	Pin CL, etal., J Cell Biol 2001 Nov 12;155(4):519-30. Epub 2001 Nov 5.
15.	RGD automated import pipeline
16.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17.	RGD automated import pipeline for gene-chemical interactions
18.	Su SB, etal., Pancreas. 1999 Oct;19(3):239-47.
19.	Watanabe R, etal., Transl Res. 2008 Sep;152(3):119-27. doi: 10.1016/j.trsl.2008.07.006. Epub 2008 Aug 20.
20.	Xiong X, etal., Am J Physiol Endocrinol Metab. 2011 Apr;300(4):E669-80. doi: 10.1152/ajpendo.00600.2010. Epub 2011 Jan 18.
21.	Zenilman ME, etal., Ann Surg. 2000 Nov;232(5):646-52.

Additional References at PubMed

PMID:7679928	PMID:8076648	PMID:8795446	PMID:9055810	PMID:10329612	PMID:10767532	PMID:12477932	PMID:14660681	PMID:15489334	PMID:16971476	PMID:18678917	PMID:20562862
PMID:21187123	PMID:21267068	PMID:21410322	PMID:21681751	PMID:21694778	PMID:21873635	PMID:22252863	PMID:22723890	PMID:22745161	PMID:23012479	PMID:23064197	PMID:23147030
PMID:23811004	PMID:23867474	PMID:25751817	PMID:26404002	PMID:26867181	PMID:28071719	PMID:28190640	PMID:28415799	PMID:28780076	PMID:29249464	PMID:29544958	PMID:29850784
PMID:30926747	PMID:31132747	PMID:32560820

Genomics

Comparative Map Data

Reg3b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	78,347,868 - 78,350,449 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	6	78,347,640 - 78,350,449 (+)	Ensembl
GRCm38	6	78,370,885 - 78,373,466 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	78,370,657 - 78,373,466 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	78,320,879 - 78,323,460 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	6	78,300,394 - 78,302,975 (+)	NCBI			mm8
Celera	6	80,394,075 - 80,396,656 (+)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI

REG3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	2	79,157,003 - 79,159,753 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	2	79,157,006 - 79,159,753 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	2	79,384,132 - 79,386,879 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	79,237,641 - 79,240,387 (-)	NCBI	NCBI36		hg18	NCBI36
Celera	2	79,212,862 - 79,215,608 (-)	NCBI
Cytogenetic Map	2	p12	NCBI
HuRef	2	79,119,456 - 79,122,204 (-)	NCBI		HuRef
CHM1_1	2	79,313,660 - 79,316,408 (-)	NCBI		CHM1_1

Reg3b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	110,861,775 - 110,865,015 (+)	NCBI
Rnor_6.0 Ensembl	4	109,467,272 - 109,470,510 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	109,467,272 - 109,470,510 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	174,173,099 - 174,176,337 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	112,355,773 - 112,359,011 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	112,600,253 - 112,603,492 (+)	NCBI
Celera	4	99,893,732 - 99,896,970 (+)	NCBI		Celera
Cytogenetic Map	4	q33	NCBI

QTLs in Region (GRCm38)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
25440480	Moaq2_m	modifier of alien QTL 2 (mouse)					6	1	117500000	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139100000	Mouse
1300556	Cia6_m	collagen induced arthritis QTL 6 (mouse)			Not determined		6	4464884	87426034	Mouse
4142126	W3q3_m	weight 3 weeks QTL 3 (mouse)			Not determined			4503823	96656149	Mouse
4142361	W10q11_m	weight 10 weeks QTL 11 (mouse)			Not determined			4503823	96656149	Mouse
4142271	Egq8_m	early growth QTL 8 (mouse)			Not determined			4503823	96656149	Mouse
4142232	W6q4_m	weight 6 weeks QTL 4 (mouse)			Not determined			4503823	96656149	Mouse
26884441	Sklq3_m	skull length QTL 3, 5 week (mouse)					6	7600000	80600000	Mouse
13208564	Bmiq7_m	body mass index QTL 7 (mouse)					6	25000000	80000000	Mouse
1558984	Cplaq9_m	circadian period of locomotor activity 9 (mouse)			Not determined		6	38669625	92607450	Mouse
1300618	Pgia19_m	proteoglycan induced arthritis 19 (mouse)			Not determined		6	45314059	87426034	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45314059	128835032	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46935985	136423692	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48720000	125360000	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48720000	148450000	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48726556	125356785	Mouse
1301254	Skts11_m	skin tumor susceptibility 11 (mouse)			Not determined		6	51179150	85179300	Mouse
1357683	Igf1sl1_m	IGF-1 serum levels 1 (mouse)			Not determined		6	52161713	116155267	Mouse
4141028	Mclr_m	methylcholanthrene lymphoma resistance (mouse)			Not determined			54373427	88379171	Mouse
15039373	Adip28_m	adiposity 28 (mouse)					6	56308211	90308211	Mouse
15039375	Bw41_m	body weight QTL 41 (mouse)					6	56308211	90308211	Mouse
1558977	Skmw10_m	skeletal muscle weight 10 (mouse)			Not determined		6	58447583	92447710	Mouse
10043972	Obq28_m	obesity QTL 28 (mouse)			Not determined		6	58540433	92540433	Mouse
1301740	Bwq2_m	body weight QTL 2 (mouse)			Not determined		6	60057680	94057799	Mouse
1301369	Im4_m	immunoregulatory 4 (mouse)			Not determined		6	63484738	97484905	Mouse
1300650	Bw18_m	body weight QTL 18 (mouse)			Not determined		6	66713869	100714031	Mouse
1301876	Bits2_m	bitterness sensitivity 2 (mouse)			Not determined		6	70425898	104426034	Mouse
1301813	Skl3_m	skeletal size (tail length) 3 (mouse)			Not determined		6	70425898	104426034	Mouse
1301034	Egrm2_m	early growth rate (mouse)			Not determined		6	70425898	104426034	Mouse
4141990	Etax6_m	ethanol induced ataxia 6 (mouse)			Not determined			71322621	86275719	Mouse
1302020	Bbaa20_m	B.burgdorferi-associated arthritis 20 (mouse)			Not determined		6	71322621	93464093	Mouse
1300869	Stheal5_m	soft tissue heal 5 (mouse)			Not determined		6	71575060	105575178	Mouse
1300954	Fcsa1_m	femoral cross-sectional area 1 (mouse)			Not determined		6	71981024	105981170	Mouse
1301521	Pas1c_m	pulmonary adenoma susceptibility 1c (mouse)			Not determined		6	71981024	105981170	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73500000	134700000	Mouse
1301320	Ots1_m	ovarian teratoma susceptibility 1 (mouse)			Not determined		6	75447583	104503555	Mouse
1301571	Arrd1_m	age-related retinal degeneration 1 (mouse)			Not determined		6	75544356	92607450	Mouse
1300674	Nidd3n_m	non-insulin-dependent diabetes mellitus 3 in NSY (mouse)			Not determined		6	75544356	94225955	Mouse
10412195	Efw_m	epididymal fat weight (mouse)			Not determined		6	75544356	94225955	Mouse
10043901	Pfat5_m	predicted fat percentage 5 (mouse)			Not determined		6	75607306	109607450	Mouse
10412208	Cypr4_m	cytokine production 4 (mouse)			Not determined		6	75716503	109716697	Mouse
1357875	Pfat2_m	predicted fat percentage 2 (mouse)			Not determined		6	76463949	110464093	Mouse
14697704	Stsl4_m	Salmonella typhimurium susceptibility locus 4 (mouse)					6	77100000	90000000	Mouse
13824985	Alh1_m	amplitude of lateral head displacement 1 (mouse)					6	78000000	97000000	Mouse

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	95
Count of miRNA genes:	85
Interacting mature miRNAs:	87
Transcripts:	ENSMUST00000096904
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_011036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC113058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC027525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D13509	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D63359	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D63360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSMUST00000096904 ⟹ ENSMUSP00000094667

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	78,370,861 - 78,373,466 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000203266 ⟹ ENSMUSP00000145528

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	78,370,898 - 78,372,908 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204760

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	78,372,531 - 78,373,418 (+)	Ensembl

RefSeq Acc Id:

ENSMUST00000204873 ⟹ ENSMUSP00000145280

RefSeq Status:

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38.p6 Ensembl	6	78,370,657 - 78,372,898 (+)	Ensembl

RefSeq Acc Id:

NM_011036 ⟹ NP_035166

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	78,347,868 - 78,350,449 (+)	NCBI
GRCm38	6	78,370,885 - 78,373,466 (+)	ENTREZGENE
MGSCv37	6	78,320,879 - 78,323,460 (+)	RGD
Celera	6	80,394,075 - 80,396,656 (+)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

ACACCATCCAGATCTCTGGAAGACAGACAAGATGCTGCCTCCAACAGCCTGCTCCGTCATGTCC
TGGATGCTGCTCTCCTGCCTGATGCTCTTATCTCAGGTTCAAGGTGAAGACTCCCTGAAGAATA
TACCCTCCGCACGCATTAGTTGCCCCAAGGGCTCCCAGGCTTATGGCTCCTACTGCTATGCCTT
GTTTCAGATACCACAGACCTGGTTTGATGCAGAACTGGCCTGCCAAAAGAGGCCTGGAGGACAC
CTCGTATCTGTGCTCAATAGCGCTGAGGCTTCATTCTTGTCCTCCATGGTGAAGAGAACAGGAA
ACAGCTACCAATACACTTGGATTGGGCTCCATGACCCCACTCTGGGTGCAGAACCCAATGGAGG
TGGATGGGAATGGAGTAACAATGACGTGATGAATTACTTTAACTGGGAGAGGAACCCATCTACT
GCCTTAGACCGTGCTTTCTGTGGCAGCTTGTCAAGAGCTTCTGGATTTCTAAAATGGAGAGATA
TGACATGTGAGGTGAAGTTGCCCTATGTCTGCAAATTTACTGGTTAAACTTATCAGACAGCAAA
CATCCCGAATTTGTCTTGAAGAGCATCATGGACAAGGGACAAAATGTGAAGACTCACCTAGAAA
AAGCATTTTCTATCTACAGTCCACATTAGAGCCTTAATCTGCTCTTTCCATATCTGTCTTTAGT
CCTTTTGGTATAAGTTTGGGCTCAATTCTAAAATAAAAATAAGCTTTCTGTCACA

hide sequence

Protein Sequences


Protein RefSeqs	NP_035166	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH27525	(Get FASTA)	NCBI Sequence Viewer
	BAA02727	(Get FASTA)	NCBI Sequence Viewer
	BAA18928	(Get FASTA)	NCBI Sequence Viewer
	BAA18929	(Get FASTA)	NCBI Sequence Viewer
	EDK99014	(Get FASTA)	NCBI Sequence Viewer
	P35230	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_035166 ⟸ NM_011036
- Peptide Label:	precursor
- UniProtKB:	P35230 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLPPTACSVMSWMLLSCLMLLSQVQGEDSLKNIPSARISCPKGSQAYGSYCYALFQIPQTWFDA ELACQKRPGGHLVSVLNSAEASFLSSMVKRTGNSYQYTWIGLHDPTLGAEPNGGGWEWSNNDVM NYFNWERNPSTALDRAFCGSLSRASGFLKWRDMTCEVKLPYVCKFTG hide sequence

RefSeq Acc Id:

ENSMUSP00000145528 ⟸ ENSMUST00000203266

RefSeq Acc Id:

ENSMUSP00000145280 ⟸ ENSMUST00000204873

RefSeq Acc Id:

ENSMUSP00000094667 ⟸ ENSMUST00000096904

Protein Domains

C-type lectin

Promoters

RGD ID:

6890064

Promoter ID:

EPDNEW_M8481

Type:

multiple initiation site

Name:

Reg3b_1

Description:

Mus musculus regenerating islet-derived 3 beta , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	78,370,885 - 78,370,945	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:97478	AgrOrtholog
Ensembl Genes	ENSMUSG00000071356	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSMUSP00000094667	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUSP00000145280	UniProtKB/TrEMBL
	ENSMUSP00000145528	UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000096904	ENTREZGENE, UniProtKB/Swiss-Prot
	ENSMUST00000203266	UniProtKB/TrEMBL
	ENSMUST00000204873	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	C-type_lectin_CS	UniProtKB/Swiss-Prot
	CTDL_fold	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	mmu:18489	UniProtKB/Swiss-Prot
MGD	MGI:97478	ENTREZGENE
NCBI Gene	18489	ENTREZGENE
Pfam	Lectin_C	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Reg3b	PhenoGen
PROSITE	C_TYPE_LECTIN_1	UniProtKB/Swiss-Prot
	C_TYPE_LECTIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF56436	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0N4SVX1_MOUSE	UniProtKB/TrEMBL
	A0A0N4SWI2_MOUSE	UniProtKB/TrEMBL
	P35230	ENTREZGENE, UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)