Gene: GTF2IP23 (general transcription factor IIi pseudogene 23) Homo sapiens
Analyze
Symbol:
GTF2IP23
Name:
general transcription factor IIi pseudogene 23
RGD ID:
11049360
HGNC Page
HGNC:51735
Description:
Type:
pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status:
VALIDATED
Related Functional Gene:
GTF2I
Allele / Splice:
See ClinVar data
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 7 66,847,450 - 66,884,273 (+) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 7 66,880,708 - 66,882,981 (+) Ensembl GRCh38 hg38 GRCh38 GRCh37 7 66,312,437 - 66,349,260 (+) NCBI GRCh37 GRCh37 hg19 GRCh37 Cytogenetic Map 7 q11.21 NCBI HuRef 7 62,506,732 - 62,529,351 (+) NCBI HuRef CHM1_1 7 66,408,768 - 66,441,159 (+) NCBI CHM1_1 T2T-CHM13v2.0 7 68,067,125 - 68,103,947 (+) NCBI T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
References
Genomics
Clinical Variants
GRCh38/hg38 7q11.21-21.11(chr7:64560824-79186156)x1
copy number loss
Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318 ]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318 ]|See cases [RCV000052318 ]
Chr7:64560824..79186156 [GRCh38] Chr7:64021202..78815472 [GRCh37] Chr7:63658637..78653408 [NCBI36] Chr7:7q11.21-21.11
pathogenic
miRNA Target Status
Predicted Target Of
Count of predictions: 54 Count of miRNA genes: 52 Interacting mature miRNAs: 54 Transcripts: ENST00000423746 Prediction methods: Miranda, Rnahybrid Result types: miRGate_prediction
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
Sequence
RefSeq Acc Id:
ENST00000423746
Type:
CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38.p14 Ensembl 7 66,880,708 - 66,882,981 (+) Ensembl
RefSeq Acc Id:
NR_135738
RefSeq Status:
VALIDATED
Type:
NON-CODING
Position:
Human Assembly Chr Position (strand) Source GRCh38 7 66,847,450 - 66,884,273 (+) NCBI CHM1_1 7 66,407,724 - 66,444,496 (+) NCBI T2T-CHM13v2.0 7 68,067,125 - 68,103,947 (+) NCBI
Sequence:
CGGCCTGTACTCCTCAGCTTGTGCTGCCCTTCTCGAATGACTCGCGTTTCCTGCTTTCATCACT ACACCTCCCACCGCTCTCCATCACCTGCTCTGCTCTTATAAGGATCCAGTTTTCAGAAAAATGG AATAGTCGTATCACTGATCTACGTAAACAAGTTGAAGAATTGTCTGAAAGAAAATACAGTGTGT CTAAACTGGAAAAGTCCTGTAATAGTTTGTTCATGAGCATTTACACAATGGAGTTGCTGTTTCA TCATGGGGGTACTGTGGACAAACCCAGGGCTGCTGACATGAACTTATGAATTCAACACATGAAG ATTTACAGCTTGACAAACCAGCTTCAGGAGGGATTGTGCTGCATTCGAACATAGGTTCTGCCAT CAAACACAGAATGCCCTGATCCTTAGAGGCAGAGGCAGCTCTTCAGCCTATGGGCTCAAGCTGT TGGACTCGCCGAGGCAGTAAAAGTACCATATCCTGTGTTTGAATCAAACTCCAATTTCCTGTAT ATAGAAGGCTTGCCAGACAGGATTCCCTTCCGAAGCCCTACCTGGTTTGGAATTCCATGACTTG AAAGGATCCTTCGTGGGAGTAATAAAATCAAGTTTGTTGTTAAAAAGTAAATTCTAGGCGGGAC GTGGTGGCTCACATCTGTAATCCCAGCAATTTGGGAGGCTGAGGCAGGCAGATCACCTGAGGTC AGGAGTTTGAGACCAGCCTGGCAAACATGGTGAAACCCCATATCTATTAAAAATACAAAGAATT AGCTGGGCGTGGTGGCAGGTACCTGGAAACCCAGCTATTTGGGAGGCTGAAACAGGAGAATCAC TTGAACCTGGGAGGCAGAGGCTGCAGTGAGCTGAGATCACACCACAGCACTCCAGCCTGGGTGA CAGAGTGAGACTCTGCCTCAACAACAACAATAAAAAACTTTGCAGTCCCCAAAAAAACCATGAA GCCCTGAGAGTAATGAAAAGCTTCCTGACATTGAGGTCACTGTGGAAGATCAGAGGATCAGAGA TCTCT
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Additional Information