GTF2IP23 (general transcription factor IIi pseudogene 23) - Rat Genome Database

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Gene: GTF2IP23 (general transcription factor IIi pseudogene 23) Homo sapiens
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Symbol: GTF2IP23
Name: general transcription factor IIi pseudogene 23
RGD ID: 11049360
HGNC Page HGNC:51735
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: VALIDATED
Related Functional Gene: GTF2I  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38766,847,450 - 66,884,273 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl766,880,708 - 66,882,981 (+)EnsemblGRCh38hg38GRCh38
GRCh37766,312,437 - 66,349,260 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map7q11.21NCBI
HuRef762,506,732 - 62,529,351 (+)NCBIHuRef
CHM1_1766,408,768 - 66,441,159 (+)NCBICHM1_1
T2T-CHM13v2.0768,067,125 - 68,103,947 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in GTF2IP23
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 7q11.21-21.11(chr7:64560824-79186156)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052318]|See cases [RCV000052318] Chr7:64560824..79186156 [GRCh38]
Chr7:64021202..78815472 [GRCh37]
Chr7:63658637..78653408 [NCBI36]
Chr7:7q11.21-21.11
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:52
Interacting mature miRNAs:54
Transcripts:ENST00000423746
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 39 2 82 7 189 9 27 16 44 22 403 131 1 5
Low 2294 2177 1574 560 1384 401 4083 1742 2444 339 1022 1449 168 1176 2557 4
Below cutoff 93 711 54 44 302 43 225 405 1108 47 14 19 1 22 211

Sequence


RefSeq Acc Id: ENST00000423746
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,880,708 - 66,882,981 (+)Ensembl
RefSeq Acc Id: NR_135738
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38766,847,450 - 66,884,273 (+)NCBI
CHM1_1766,407,724 - 66,444,496 (+)NCBI
T2T-CHM13v2.0768,067,125 - 68,103,947 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC GTF2IP23 COSMIC
Ensembl Genes ENSG00000230295 Ensembl
GTEx ENSG00000230295 GTEx
HGNC ID HGNC:51735 ENTREZGENE
Human Proteome Map GTF2IP23 Human Proteome Map
NCBI Gene GTF2IP23 ENTREZGENE