A430057M04Rik (RIKEN cDNA A430057M04 gene) - Rat Genome Database

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Gene: A430057M04Rik (RIKEN cDNA A430057M04 gene) Mus musculus
Analyze
Symbol: A430057M04Rik
Name: RIKEN cDNA A430057M04 gene
RGD ID: 11049184
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: uncharacterized protein LOC319486
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391421,897,646 - 21,906,994 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1421,897,646 - 21,906,999 (+)EnsemblGRCm39 Ensembl
GRCm381421,847,578 - 21,856,926 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1421,847,578 - 21,856,931 (+)EnsemblGRCm38mm10GRCm38
MGSCv371422,666,800 - 22,676,148 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361420,636,999 - 20,645,478 (+)NCBIMGSCv36mm8
Celera1418,231,185 - 18,239,666 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1411.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11387227   PMID:12466851   PMID:16141072   PMID:16141073   PMID:21267068  


Genomics

Variants

.
Variants in A430057M04Rik
258 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:298
Count of miRNA genes:253
Interacting mature miRNAs:269
Transcripts:ENSMUST00000169054, ENSMUST00000170150
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412071Ssen3_msuseptibility to Sendai virus 3 (mouse)Not determined14126987934Mouse
11532711Sluc40_msusceptibility to lung cancer 40 (mouse)14127379943Mouse
1301991Wta3_mweight adult 3 (mouse)Not determined14388747337887650Mouse
4141550Dbm3_mdiabetes modifier 3 (mouse)Not determined514347339143596Mouse
4141265Appd2_mAPP associated premature death 2 (mouse)Not determined14594555230114862Mouse
4141864Mrdq4_mmodifier of retinal degeneration QTL 4 (mouse)Not determined992324548765082Mouse
1300779Dyscalc4_mdystrophic cardiac calcinosis 4 (mouse)Not determined141221287146213007Mouse
27226748Femd8_mfemur midshaft diameter 8, 10 week (mouse)141376927346737457Mouse
27226752Femd4_mfemur midshaft diameter 4, 5 week (mouse)141376927347237457Mouse
1300544Hypn_mhyperinsulinemia (mouse)Not determined141516061649160765Mouse
1301372Sluc13_msusceptibility to lung cancer 13 (mouse)Not determined141882760452827726Mouse
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420887473121269804Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142106245071885801Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000169054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1421,898,515 - 21,906,999 (+)Ensembl
GRCm38.p6 Ensembl1421,848,447 - 21,856,931 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1421,897,646 - 21,901,108 (+)Ensembl
GRCm38.p6 Ensembl1421,847,578 - 21,851,040 (+)Ensembl
RefSeq Acc Id: NM_176925   ⟹   NP_795899
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391421,897,646 - 21,906,994 (+)NCBI
GRCm381421,847,578 - 21,856,926 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_795899 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAC37742 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_795899   ⟸   NM_176925
- UniProtKB: Q8C520 (UniProtKB/TrEMBL)

Promoters
RGD ID:15094399
Promoter ID:EPDNEWNC_M2310
Type:multiple initiation site
Name:A430057M04Rik_1
Description:RIKEN cDNA A430057M04 gene [Source:MGISymbol;Acc:MGI:2442125]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381421,848,475 - 21,848,535EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000090564 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000169054 ENTREZGENE
KEGG Report mmu:319486 UniProtKB/TrEMBL
MGD MGI:2442125 ENTREZGENE
NCBI Gene A430057M04Rik ENTREZGENE
PhenoGen A430057M04Rik PhenoGen
UniProt Q8C520 ENTREZGENE, UniProtKB/TrEMBL