Ninj1 (ninjurin 1) - Rat Genome Database

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Gene: Ninj1 (ninjurin 1) Mus musculus
Analyze
Symbol: Ninj1
Name: ninjurin 1
RGD ID: 10985
MGI Page MGI
Description: Enables cell-cell adhesion mediator activity and lipopolysaccharide binding activity. Involved in several processes, including leukocyte chemotaxis; pericyte cell migration; and positive regulation of osteoclast development. Acts upstream of or within hyaloid vascular plexus regression and positive regulation of cell-matrix adhesion. Located in extracellular region; filopodium membrane; and synaptic membrane. Is integral component of plasma membrane. Is expressed in several structures, including body cavity or lining; central nervous system; eye; genitourinary system; and vertebral axis musculature. Orthologous to human NINJ1 (ninjurin 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AU024536; nerve injury-induced protein 1; ninjurin-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,341,005 - 49,349,727 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,340,961 - 49,349,720 (+)EnsemblGRCm39 Ensembl
GRCm381349,187,529 - 49,196,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,187,485 - 49,196,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,282,916 - 49,291,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,199,484 - 49,208,188 (+)NCBIMGSCv36mm8
Celera1350,277,705 - 50,286,409 (+)NCBICelera
Cytogenetic Map13A5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,4-phenylenediamine  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-acetamidofluorene  (ISO)
2-hydroxypropanoic acid  (ISO)
2-methoxyethanol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP,ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
acetylsalicylic acid  (ISO)
adefovir pivoxil  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (ISO)
cadmium dichloride  (ISO)
calcitriol  (ISO)
carbon nanotube  (EXP)
chloroacetaldehyde  (ISO)
chlorpromazine  (ISO)
chlorpyrifos  (ISO)
cidofovir anhydrous  (ISO)
cisplatin  (ISO)
clobetasol  (EXP)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
diethylstilbestrol  (ISO)
dimethylarsinic acid  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
diuron  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
ethyl methanesulfonate  (ISO)
fenofibrate  (ISO)
flutamide  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
glafenine  (ISO)
isoprenaline  (EXP)
L-ascorbic acid  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
malathion  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methyl methanesulfonate  (ISO)
morphine  (ISO)
N-methyl-4-phenylpyridinium  (EXP,ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
pentachlorophenol  (EXP)
rac-lactic acid  (ISO)
raloxifene  (ISO)
rotenone  (ISO)
selenium atom  (ISO)
Soman  (ISO)
succimer  (EXP)
sunitinib  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
topotecan  (ISO)
trichloroethene  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
zoledronic acid  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, etal., Development 2000 Apr;127(8):1737-49.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. Mouse MP Annotation Import Pipeline RGD automated import pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9465296   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11913785   PMID:12477932   PMID:15782199   PMID:16141072   PMID:16141073   PMID:18287559  
PMID:19449303   PMID:19557008   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23142597   PMID:23551591   PMID:23690620   PMID:24347169   PMID:24917672   PMID:24979788   PMID:25766274  
PMID:25860173   PMID:26275310   PMID:26677008   PMID:27127177   PMID:27815839   PMID:28067406   PMID:29073078   PMID:30354207   PMID:30510259   PMID:30700695   PMID:31091274   PMID:31526566  
PMID:31963519   PMID:32883094   PMID:33472215   PMID:33961504   PMID:34974535  


Genomics

Comparative Map Data
Ninj1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,341,005 - 49,349,727 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,340,961 - 49,349,720 (+)EnsemblGRCm39 Ensembl
GRCm381349,187,529 - 49,196,251 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,187,485 - 49,196,244 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,282,916 - 49,291,620 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,199,484 - 49,208,188 (+)NCBIMGSCv36mm8
Celera1350,277,705 - 50,286,409 (+)NCBICelera
Cytogenetic Map13A5NCBI
NINJ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38993,121,496 - 93,134,251 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl993,121,496 - 93,134,251 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,883,778 - 95,896,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,923,592 - 94,936,391 (-)NCBINCBI36Build 36hg18NCBI36
Build 34992,963,334 - 92,976,125NCBI
Celera966,325,478 - 66,338,278 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef965,560,157 - 65,572,990 (-)NCBIHuRef
CHM1_1996,030,378 - 96,043,177 (-)NCBICHM1_1
T2T-CHM13v2.09105,288,107 - 105,300,864 (-)NCBIT2T-CHM13v2.0
Ninj1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21715,452,804 - 15,461,684 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,452,813 - 15,461,704 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01715,866,235 - 15,881,284 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,866,237 - 15,881,327 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01717,930,052 - 17,945,126 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,410,701 - 21,419,472 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11721,410,700 - 21,419,472 (-)NCBI
Celera1715,182,635 - 15,191,450 (-)NCBICelera
Cytogenetic Map17p14NCBI
Ninj1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555154,892,039 - 4,907,323 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555154,892,748 - 4,905,627 (+)NCBIChiLan1.0ChiLan1.0
NINJ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1992,311,502 - 92,324,025 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl992,311,502 - 92,324,030 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0964,245,086 - 64,258,614 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NINJ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,566,520 - 98,576,668 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,567,680 - 98,576,657 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha198,960,941 - 98,970,738 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,183,728 - 99,193,686 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1198,797,064 - 98,806,858 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,532,406 - 98,542,206 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,288,008 - 99,297,814 (+)NCBIUU_Cfam_GSD_1.0
Ninj1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049448,270,364 - 8,275,943 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364872,486,831 - 2,531,943 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NINJ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,654,228 - 42,672,778 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,654,536 - 42,672,830 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NINJ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112103,509,950 - 103,523,158 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12103,510,454 - 103,523,084 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603891,784,589 - 91,798,519 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ninj1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,430,209 - 3,445,542 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,430,539 - 3,442,205 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
AU024536  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381349,195,790 - 49,195,882UniSTSGRCm38
MGSCv371349,291,159 - 49,291,251UniSTSGRCm37
Celera1350,285,948 - 50,286,040UniSTS
Cytogenetic Map13A5UniSTS
Whitehead/MRC_RH13518.34UniSTS
U91513  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381349,195,763 - 49,195,845UniSTSGRCm38
MGSCv371349,291,132 - 49,291,214UniSTSGRCm37
Celera1350,285,921 - 50,286,003UniSTS
Cytogenetic Map13A5UniSTS
Whitehead/MRC_RH13518.34UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
12738427Lfibq24_mliver fibrosis QTL 24 (mouse)134425810752758667Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1134
Count of miRNA genes:435
Interacting mature miRNAs:514
Transcripts:ENSMUST00000049022, ENSMUST00000120733, ENSMUST00000131280, ENSMUST00000150555, ENSMUST00000153819
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF219626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077602 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK155741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK183237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK206689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210825 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB756836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC049600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC118937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U91513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000049022   ⟹   ENSMUSP00000036740
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1349,340,961 - 49,349,720 (+)Ensembl
GRCm38.p6 Ensembl1349,187,485 - 49,196,244 (+)Ensembl
RefSeq Acc Id: ENSMUST00000120733   ⟹   ENSMUSP00000114130
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1349,341,001 - 49,349,720 (+)Ensembl
GRCm38.p6 Ensembl1349,187,525 - 49,196,244 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131280   ⟹   ENSMUSP00000121186
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1349,341,012 - 49,349,235 (+)Ensembl
GRCm38.p6 Ensembl1349,187,536 - 49,195,759 (+)Ensembl
RefSeq Acc Id: ENSMUST00000150555
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1349,341,243 - 49,348,400 (+)Ensembl
GRCm38.p6 Ensembl1349,187,767 - 49,194,924 (+)Ensembl
RefSeq Acc Id: ENSMUST00000153819
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1349,343,772 - 49,349,720 (+)Ensembl
GRCm38.p6 Ensembl1349,190,296 - 49,196,244 (+)Ensembl
RefSeq Acc Id: NM_013610   ⟹   NP_038638
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391349,341,005 - 49,349,727 (+)NCBI
GRCm381349,187,529 - 49,196,251 (+)NCBI
MGSCv371349,282,916 - 49,291,620 (+)RGD
Celera1350,277,705 - 50,286,409 (+)RGD
cM Map13 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038638   ⟸   NM_013610
- UniProtKB: O70131 (UniProtKB/Swiss-Prot),   Q3TXT8 (UniProtKB/TrEMBL),   A0A6P5QW50 (UniProtKB/TrEMBL),   A0A8C6ICB6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000036740   ⟸   ENSMUST00000049022
RefSeq Acc Id: ENSMUSP00000121186   ⟸   ENSMUST00000131280
RefSeq Acc Id: ENSMUSP00000114130   ⟸   ENSMUST00000120733

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-O70131-F1-model_v2 AlphaFold O70131 1-152 view protein structure

Promoters
RGD ID:8680288
Promoter ID:EPDNEW_M18174
Type:initiation region
Name:Ninj1_1
Description:Mus musculus ninjurin 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381349,187,529 - 49,187,589EPDNEW
RGD ID:6824187
Promoter ID:MM_KWN:14030
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000120733,   OTTMUST00000068647,   OTTMUST00000068649,   OTTMUST00000068651
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361349,282,606 - 49,283,297 (+)MPROMDB
RGD ID:6824189
Promoter ID:MM_KWN:14031
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Kidney,   Liver
Transcripts:OTTMUST00000068650
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361349,285,301 - 49,285,802 (+)MPROMDB
RGD ID:6848625
Promoter ID:MM_TRO:2502
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain
Transcripts:MTR007744.13.905.5
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361349,289,036 - 49,289,536 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1196617 AgrOrtholog
Ensembl Genes ENSMUSG00000037966 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000036740 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114130.2 UniProtKB/TrEMBL
  ENSMUSP00000121186.2 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000049022 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000120733.8 UniProtKB/TrEMBL
  ENSMUST00000131280.2 UniProtKB/TrEMBL
InterPro Ninjurin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ninjurin1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18081 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1196617 ENTREZGENE
NCBI Gene 18081 ENTREZGENE
PANTHER PTHR12316 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12316:SF19 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ninjurin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ninj1 PhenoGen
UniProt A0A6P5QW50 ENTREZGENE
  A0A8C6ICB6 ENTREZGENE
  D3YW25_MOUSE UniProtKB/TrEMBL
  D6RFN5_MOUSE UniProtKB/TrEMBL
  NINJ1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TXT8 ENTREZGENE, UniProtKB/TrEMBL
  Q8BP68_MOUSE UniProtKB/TrEMBL