Nfyb (nuclear transcription factor-Y beta) - Rat Genome Database
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Gene: Nfyb (nuclear transcription factor-Y beta) Mus musculus
Analyze
Symbol: Nfyb
Name: nuclear transcription factor-Y beta
RGD ID: 10976
MGI Page MGI
Description: Exhibits DNA-binding transcription factor activity and sequence-specific DNA binding activity. Contributes to transcription regulatory region sequence-specific DNA binding activity. Involved in cellular response to leukemia inhibitory factor and positive regulation of transcription, DNA-templated. Localizes to nucleus. Is expressed in several structures, including alimentary system; branchial arch; early conceptus; genitourinary system; and nervous system. Orthologous to human NFYB (nuclear transcription factor Y subunit beta); PARTICIPATES IN altered p53 signaling pathway; antigen processing and presentation pathway; tuberculosis pathway; INTERACTS WITH 1,2-dichloroethane; 1,2-dimethylhydrazine; 17alpha-ethynylestradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AA985999; CAAT box DNA-binding protein subunit B; CAAT-box DNA-binding protein subunit B; Cbf-; Cbf-A; NF-YB; nuclear transcription factor Y subunit B; nuclear transcription factor Y subunit beta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,584,534 - 82,599,985 (-)NCBIGRCm39mm39
GRCm381082,748,700 - 82,764,151 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,748,701 - 82,764,144 (-)EnsemblGRCm38mm10GRCm38
MGSCv371082,211,445 - 82,226,886 (-)NCBIGRCm37mm9NCBIm37
MGSCv361082,178,499 - 82,193,940 (-)NCBImm8
Celera1084,733,247 - 84,748,605 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(S)-nicotine  (ISO)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
2-naphthylamine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (EXP,ISO)
acrylamide  (ISO)
aflatoxin B1  (EXP)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
Aroclor 1254  (EXP)
benzo[a]pyrene  (EXP,ISO)
bisphenol A  (ISO)
carbon nanotube  (EXP)
choline  (EXP)
ciguatoxin CTX1B  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dicrotophos  (ISO)
dorsomorphin  (ISO)
ethanol  (EXP)
fluoranthene  (EXP)
folic acid  (EXP)
geraniol  (ISO)
indometacin  (ISO)
L-methionine  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxyacetic acid  (EXP)
methylmercury chloride  (ISO)
methylparaben  (ISO)
Monobutylphthalate  (EXP)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nicotine  (ISO)
oxaliplatin  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
pentachlorophenol  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (EXP,ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
potassium chromate  (ISO)
propiconazole  (EXP)
SB 431542  (ISO)
Soman  (ISO)
sunitinib  (ISO)
tamibarotene  (ISO)
tert-butyl hydroperoxide  (ISO)
thimerosal  (ISO)
topotecan  (ISO)
trabectedin  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
valproic acid  (EXP,ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1549471   PMID:1577736   PMID:1698608   PMID:1774067   PMID:7552299   PMID:8760361   PMID:8812488   PMID:8910521   PMID:8921405   PMID:9516473   PMID:10349636   PMID:10512203  
PMID:10585259   PMID:11042159   PMID:11076861   PMID:11389549   PMID:12477932   PMID:12520002   PMID:12771133   PMID:12904583   PMID:14610273   PMID:14681479   PMID:15220343   PMID:15454570  
PMID:15489334   PMID:15516209   PMID:15601870   PMID:15840001   PMID:15964792   PMID:16141072   PMID:16141073   PMID:16325481   PMID:17131407   PMID:18287559   PMID:18424784   PMID:18480411  
PMID:18799693   PMID:19734906   PMID:20059953   PMID:20388536   PMID:20412781   PMID:20439489   PMID:21677750   PMID:21873635   PMID:22355653   PMID:24952961   PMID:25132174   PMID:25689854  
PMID:29704264   PMID:32325033   PMID:32968282  


Genomics

Comparative Map Data
Nfyb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391082,584,534 - 82,599,985 (-)NCBIGRCm39mm39
GRCm381082,748,700 - 82,764,151 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1082,748,701 - 82,764,144 (-)EnsemblGRCm38mm10GRCm38
MGSCv371082,211,445 - 82,226,886 (-)NCBIGRCm37mm9NCBIm37
MGSCv361082,178,499 - 82,193,940 (-)NCBImm8
Celera1084,733,247 - 84,748,605 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1040.25NCBI
NFYB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12104,117,086 - 104,138,241 (-)EnsemblGRCh38hg38GRCh38
GRCh3812104,117,086 - 104,138,241 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712104,510,858 - 104,532,040 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612103,034,988 - 103,056,170 (-)NCBINCBI36hg18NCBI36
Build 3412103,013,324 - 103,034,507NCBI
Celera12104,174,600 - 104,195,782 (-)NCBI
Cytogenetic Map12q23.3NCBI
HuRef12101,570,544 - 101,591,726 (-)NCBIHuRef
CHM1_112104,476,772 - 104,497,954 (-)NCBICHM1_1
Nfyb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0727,081,667 - 27,097,481 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl727,081,667 - 27,097,479 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0727,200,204 - 27,216,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4723,190,295 - 23,205,611 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1723,210,565 - 23,225,880 (+)NCBI
Celera718,145,883 - 18,161,286 (+)NCBICelera
Cytogenetic Map7q13NCBI
Nfyb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540538,771,837 - 38,789,536 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540538,773,690 - 38,789,534 (-)NCBIChiLan1.0ChiLan1.0
NFYB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112105,089,028 - 105,108,825 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12105,089,028 - 105,108,825 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012101,693,559 - 101,714,057 (-)NCBIMhudiblu_PPA_v0panPan3
NFYB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl1542,609,606 - 42,629,158 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.11542,608,067 - 42,628,816 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Nfyb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493649210,359,387 - 10,377,537 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NFYB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl580,334,747 - 80,353,772 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1580,333,762 - 80,353,466 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2583,903,195 - 83,922,952 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap5q2.3NCBI
NFYB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11199,320,263 - 99,341,289 (-)NCBI
ChlSab1.1 Ensembl1199,319,390 - 99,329,726 (-)Ensembl
Nfyb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247504,600,423 - 4,616,241 (+)NCBI

Position Markers
16.MMHAP35FRF7.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381082,763,226 - 82,763,399UniSTSGRCm38
MGSCv371082,225,971 - 82,226,144UniSTSGRCm37
Celera1084,747,691 - 84,747,864UniSTS
Cytogenetic Map10C3-D1UniSTS
Whitehead_YAC10 UniSTS
AA985999  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381082,748,774 - 82,748,895UniSTSGRCm38
MGSCv371082,211,519 - 82,211,640UniSTSGRCm37
Celera1084,733,327 - 84,733,448UniSTS
Cytogenetic Map10C3-D1UniSTS
Whitehead/MRC_RH10935.77UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1301386Sysbp1_msystolic blood pressure 1 (mouse)Not determined101023252187565233Mouse
1357825Kidpq2_mkidney weight percentage QTL 2 (mouse)Not determined101282830784243920Mouse
1357656Hrtq3_mheart weight QTL 3 (mouse)Not determined101282830784243920Mouse
1357864Scfpq1_msubcutaneous fat pad percentage QTL 1 (mouse)Not determined101282830784243920Mouse
1357893Lvrq4_mliver weight QTL 4 (mouse)Not determined101282830784243920Mouse
4142380W3q11_mweight 3 weeks QTL 11 (mouse)Not determined1282830784243920Mouse
4141943W6q6_mweight 6 weeks QTL 6 (mouse)Not determined1282830784243920Mouse
4141956Egq7_mearly growth QTL 7 (mouse)Not determined1282830784243920Mouse
4142272W10q5_mweight 10 weeks QTL 5 (mouse)Not determined1282830784243920Mouse
39128215Lwq17_mliver weight QTL 17 (mouse)101282830784243920Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884403Cvht8_mcranial vault height 8, 16 week (mouse)102300000091200000Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
1302150Bbaa18_mB.burgdorferi-associated arthritis 18 (mouse)Not determined104950223383502378Mouse
4142169Pbwg16_mpostnatal body weight growth 16 (mouse)Not determined105001240884012633Mouse
1300597Skull14_mskull morphology 14 (mouse)Not determined105001240884012633Mouse
10045641Jckm3_mjuvenile cystic kidney modifier 3 (mouse)Not determined105001240884012633Mouse
1301966Lifespan2_mlife span 2 (mouse)Not determined105001244384012618Mouse
1357737Hpcr2_mhepatocarcinogen resistance 2 (mouse)Not determined105001244384012618Mouse
1300882Ath17_matherosclerosis 17 (mouse)Not determined105125566085255809Mouse
1301502Eae17_msusceptibility to experimental allergic encephalomyelitis 17 (mouse)Not determined105125566085255809Mouse
14746991Manh68_mmandible shape 68 (mouse)105244466786444667Mouse
1301787Bsc1_mbrain size control 1 (mouse)Not determined105868113592681262Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
1302060El3_mepilepsy 3 (mouse)Not determined106565510499655287Mouse
1300533Aem3_manti-erythrocyte autoantibody modifier 3 (mouse)Not determined106565510499655287Mouse
1301737Insq9_minsulin QTL 9 (mouse)Not determined106565510499655287Mouse
1302035Lmb4_mlupus in MRL and B6 F2 cross (mouse)Not determined106701240892422811Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078545406112545406Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082242550116242550Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082473556116473795Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082473556116473795Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082473556116473795Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082473556116473795Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082473556116473795Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082473556116473795Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082556941116557090Mouse
4141382Ssrq4_mstress response QTL 4 (mouse)Not determined8265510491020240Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:936
Count of miRNA genes:589
Interacting mature miRNAs:701
Transcripts:ENSMUST00000127832, ENSMUST00000128397, ENSMUST00000129640, ENSMUST00000130911, ENSMUST00000142523, ENSMUST00000143749, ENSMUST00000145561
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000127832
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,752,416 - 82,763,663 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128397
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,755,068 - 82,757,307 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129640
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,751,166 - 82,752,550 (-)Ensembl
RefSeq Acc Id: ENSMUST00000130911   ⟹   ENSMUSP00000122403
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,748,701 - 82,764,144 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142523   ⟹   ENSMUSP00000116039
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,752,518 - 82,763,646 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143749
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,749,287 - 82,764,101 (-)Ensembl
RefSeq Acc Id: ENSMUST00000145561
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1082,750,474 - 82,751,659 (-)Ensembl
RefSeq Acc Id: NM_010914   ⟹   NP_035044
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,584,534 - 82,599,975 (-)NCBI
GRCm381082,748,700 - 82,764,141 (-)NCBI
MGSCv371082,211,445 - 82,226,886 (-)RGD
Celera1084,733,247 - 84,748,605 (-)RGD
cM Map10 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011243379   ⟹   XP_011241681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,584,535 - 82,599,763 (-)NCBI
GRCm381082,748,701 - 82,763,824 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243380   ⟹   XP_011241682
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,584,535 - 82,599,985 (-)NCBI
GRCm381082,748,701 - 82,764,151 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011243381   ⟹   XP_011241683
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391082,584,535 - 82,599,753 (-)NCBI
GRCm381082,748,701 - 82,763,726 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_035044   ⟸   NM_010914
- UniProtKB: P63139 (UniProtKB/Swiss-Prot),   Q8C590 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011241682   ⟸   XM_011243380
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011241683   ⟸   XM_011243381
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011241681   ⟸   XM_011243379
- Peptide Label: isoform X1
- UniProtKB: P63139 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000122403   ⟸   ENSMUST00000130911
RefSeq Acc Id: ENSMUSP00000116039   ⟸   ENSMUST00000142523
Protein Domains
CBFD_NFYB_HMF

Promoters
RGD ID:6819668
Promoter ID:MM_KWN:5098
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain,   Liver,   Lung
Transcripts:OTTMUST00000081494
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361082,213,911 - 82,214,942 (-)MPROMDB
RGD ID:6819667
Promoter ID:MM_KWN:5099
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   MEF_B6
Transcripts:OTTMUST00000081495
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361082,215,181 - 82,215,832 (-)MPROMDB
RGD ID:6819670
Promoter ID:MM_KWN:5100
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Liver,   MEF_B6
Transcripts:ENSMUST00000020482,   OTTMUST00000081496
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361082,219,711 - 82,220,712 (-)MPROMDB
RGD ID:6819669
Promoter ID:MM_KWN:5101
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000105309,   OTTMUST00000081491,   OTTMUST00000081492,   OTTMUST00000081493,   UC007GJW.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361082,226,631 - 82,227,132 (-)MPROMDB
RGD ID:8672864
Promoter ID:EPDNEW_M14463
Type:initiation region
Name:Nfyb_1
Description:Mus musculus nuclear transcription factor-Y beta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381082,764,066 - 82,764,126EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97317 AgrOrtholog
Ensembl Genes ENSMUSG00000020248 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000116039 UniProtKB/TrEMBL
  ENSMUSP00000122403 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000130911 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000142523 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro CBFA_NFYB_domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Histone-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Transcrpt_fac_NFYB/HAP3_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:18045 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97317 ENTREZGENE
NCBI Gene 18045 ENTREZGENE
Pfam CBFD_NFYB_HMF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Nfyb PhenoGen
PROSITE NFYB_HAP3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniGene Mm.245998 ENTREZGENE
UniProt D3Z723_MOUSE UniProtKB/TrEMBL
  NFYB_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U1S7_MOUSE UniProtKB/TrEMBL
  Q8C590 ENTREZGENE, UniProtKB/TrEMBL
  Q9D056_MOUSE UniProtKB/TrEMBL
UniProt Secondary P22569 UniProtKB/Swiss-Prot
  Q3UK54 UniProtKB/Swiss-Prot