Myf6 (myogenic factor 6) - Rat Genome Database

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Gene: Myf6 (myogenic factor 6) Mus musculus
Analyze
Symbol: Myf6
Name: myogenic factor 6
RGD ID: 10946
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific. Acts upstream of or within muscle organ development; regulation of transcription, DNA-templated; and somitogenesis. Predicted to be located in nucleus. Is expressed in several structures, including esophagus; ganglia; limb; paraxial mesenchyme; and skeletal musculature. Human ortholog(s) of this gene implicated in congenital structural myopathy. Orthologous to human MYF6 (myogenic factor 6); INTERACTS WITH bis(2-chloroethyl) sulfide; bisphenol A; chlorpyrifos.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: bHLHc; bHLHc4; herc; herculin; MRF; MRF4; muscle-specific regulatory factor 4; myf-6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910107,328,709 - 107,330,584 (-)NCBIGRCm39mm39
GRCm39 Ensembl10107,328,714 - 107,330,598 (-)Ensembl
GRCm3810107,492,848 - 107,494,723 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10107,492,853 - 107,494,737 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710106,929,916 - 106,931,785 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610106,896,970 - 106,898,839 (-)NCBImm8
Celera10109,435,323 - 109,437,177 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.96NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal adipose tissue distribution  (IAGP)
abnormal cervical vertebrae morphology  (IAGP)
abnormal extraocular muscle morphology  (IAGP)
abnormal eye muscle development  (IAGP)
abnormal intercostal muscle morphology  (IAGP)
abnormal muscle development  (IAGP)
abnormal muscle fiber morphology  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal myogenesis  (IAGP)
abnormal myotome development  (IAGP)
abnormal myotome morphology  (IAGP)
abnormal rib development  (IAGP)
abnormal rib morphology  (IAGP)
abnormal skeletal muscle fiber morphology  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal somite development  (IAGP)
abnormal sternebra morphology  (IAGP)
abnormal sternocostal joint morphology  (IAGP)
abnormal sternum ossification  (IAGP)
absent skeletal muscle  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
decreased body size  (IAGP)
decreased fetal size  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased skeletal muscle fiber number  (IAGP)
increased rhabdomyosarcoma incidence  (IAGP)
kyphosis  (IAGP)
muscle hypoplasia  (IAGP)
myopathy  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
premature death  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
rib bifurcation  (IAGP)
rib fusion  (IAGP)
short ribs  (IAGP)
split sternum  (IAGP)
truncated ribs  (IAGP)
References

Additional References at PubMed
PMID:1374351   PMID:1423602   PMID:1588952   PMID:1715299   PMID:1846704   PMID:1911647   PMID:1962752   PMID:2045411   PMID:2300571   PMID:7588068   PMID:7589813   PMID:7590734  
PMID:7720554   PMID:7720708   PMID:7721942   PMID:7781901   PMID:7797078   PMID:7852366   PMID:7929574   PMID:8196663   PMID:8293880   PMID:8375340   PMID:8391976   PMID:8393145  
PMID:8575308   PMID:8620528   PMID:8626014   PMID:8627340   PMID:8950513   PMID:9187083   PMID:9268575   PMID:9268580   PMID:9284043   PMID:9343420   PMID:9359635   PMID:9405106  
PMID:9609818   PMID:9681116   PMID:9808779   PMID:10037786   PMID:10075840   PMID:10349636   PMID:10635459   PMID:10669094   PMID:10694423   PMID:10733231   PMID:10837126   PMID:10898959  
PMID:10929709   PMID:10974667   PMID:11042159   PMID:11076861   PMID:11201041   PMID:11217851   PMID:11311165   PMID:11839816   PMID:12204280   PMID:12435381   PMID:12466851   PMID:12477932  
PMID:14517256   PMID:15282164   PMID:15282310   PMID:15386014   PMID:15489287   PMID:15618518   PMID:15788460   PMID:15893969   PMID:15964993   PMID:16007210   PMID:16141072   PMID:16141073  
PMID:16358417   PMID:16387292   PMID:16951257   PMID:17039375   PMID:17098221   PMID:17194759   PMID:17295338   PMID:17418413   PMID:17875930   PMID:17904117   PMID:17959144   PMID:17961534  
PMID:18198342   PMID:18287559   PMID:18331721   PMID:18367555   PMID:18557763   PMID:18601931   PMID:18719582   PMID:19332644   PMID:19339268   PMID:19521566   PMID:19531352   PMID:19962975  
PMID:20013826   PMID:20059953   PMID:20144785   PMID:20307260   PMID:20334626   PMID:20412779   PMID:21212806   PMID:21267068   PMID:21278612   PMID:21316601   PMID:21422169   PMID:21873635  
PMID:22147266   PMID:22349825   PMID:22460713   PMID:22522309   PMID:22859371   PMID:22960170   PMID:23623977   PMID:23897781   PMID:23982155   PMID:23987512   PMID:24301466   PMID:24361185  
PMID:24453992   PMID:24703692   PMID:24844572   PMID:24952961   PMID:25030697   PMID:25490270   PMID:26498529   PMID:26688546   PMID:26935107   PMID:27166947   PMID:27881824   PMID:28437527  
PMID:28600325   PMID:28600496   PMID:28827394   PMID:28883017   PMID:28893950   PMID:29543863   PMID:29617647   PMID:30093562   PMID:30389854   PMID:31685980   PMID:32339642   PMID:32768399  
PMID:33047485   PMID:33298461   PMID:33527775  


Genomics

Comparative Map Data
Myf6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910107,328,709 - 107,330,584 (-)NCBIGRCm39mm39
GRCm39 Ensembl10107,328,714 - 107,330,598 (-)Ensembl
GRCm3810107,492,848 - 107,494,723 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10107,492,853 - 107,494,737 (-)EnsemblGRCm38mm10GRCm38
MGSCv3710106,929,916 - 106,931,785 (-)NCBIGRCm37mm9NCBIm37
MGSCv3610106,896,970 - 106,898,839 (-)NCBImm8
Celera10109,435,323 - 109,437,177 (-)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1055.96NCBI
MYF6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1280,707,634 - 80,709,474 (+)EnsemblGRCh38hg38GRCh38
GRCh381280,707,634 - 80,709,474 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371281,101,413 - 81,103,253 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361279,625,577 - 79,627,382 (+)NCBINCBI36hg18NCBI36
Build 341279,603,913 - 79,605,719NCBI
Celera1280,767,622 - 80,769,471 (+)NCBI
Cytogenetic Map12q21.31NCBI
HuRef1278,158,292 - 78,160,141 (+)NCBIHuRef
CHM1_11281,067,815 - 81,069,664 (+)NCBICHM1_1
Myf6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2742,813,008 - 42,814,852 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl742,812,792 - 42,814,852 (-)Ensembl
Rnor_6.0749,739,643 - 49,741,490 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl749,739,646 - 49,741,540 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0749,749,554 - 49,751,448 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4746,199,972 - 46,201,867 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1746,220,242 - 46,222,138 (-)NCBI
Celera739,685,604 - 39,687,449 (-)NCBICelera
RH 3.4 Map7351.6RGD
RH 3.4 Map7346.21RGD
Cytogenetic Map7q21NCBI
Myf6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540519,336,718 - 19,338,670 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540519,336,798 - 19,338,610 (+)NCBIChiLan1.0ChiLan1.0
MYF6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11281,338,339 - 81,340,176 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1281,338,339 - 81,340,176 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01278,226,562 - 78,229,470 (+)NCBIMhudiblu_PPA_v0panPan3
MYF6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11523,039,090 - 23,041,092 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1523,039,416 - 23,041,019 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1523,462,866 - 23,467,438 (+)NCBI
ROS_Cfam_1.01523,399,954 - 23,404,522 (+)NCBI
UMICH_Zoey_3.11522,977,287 - 22,981,857 (+)NCBI
UNSW_CanFamBas_1.01523,036,794 - 23,041,335 (+)NCBI
UU_Cfam_GSD_1.01523,277,134 - 23,281,706 (+)NCBI
Myf6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494537,311,426 - 37,313,351 (-)NCBI
SpeTri2.0NW_0049366981,599,149 - 1,600,989 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MYF6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl5100,762,910 - 100,765,704 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.15100,762,918 - 100,764,771 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25105,710,667 - 105,712,524 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MYF6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11176,180,919 - 76,183,910 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1176,182,151 - 76,183,992 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037169,253,627 - 169,255,494 (-)NCBIVero_WHO_p1.0
Myf6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462483724,711 - 29,217 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
X59060  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,196 - 107,493,342UniSTSGRCm38
MGSCv3710106,930,252 - 106,930,398UniSTSGRCm37
Celera10109,435,659 - 109,435,805UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Whitehead/MRC_RH101180.04UniSTS
Myf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,444 - 107,493,898UniSTSGRCm38
MGSCv3710106,930,500 - 106,930,954UniSTSGRCm37
Celera10109,435,907 - 109,436,346UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
cM Map1059.0UniSTS
PMC133893P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,418 - 107,494,407UniSTSGRCm38
MGSCv3710106,930,474 - 106,931,463UniSTSGRCm37
Celera10109,435,881 - 109,436,855UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
RH94559  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,033 - 107,493,200UniSTSGRCm38
MGSCv3710106,930,089 - 106,930,256UniSTSGRCm37
Celera10109,435,496 - 109,435,663UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
UniSTS:493890  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,267 - 107,494,728UniSTSGRCm38
MGSCv3710106,930,323 - 106,931,784UniSTSGRCm37
Celera10109,435,730 - 109,437,176UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,206 - 107,493,663UniSTSGRCm38
MGSCv3710106,930,262 - 106,930,719UniSTSGRCm37
Celera10109,435,669 - 109,436,126UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,592 - 107,493,799UniSTSGRCm38
MGSCv3710106,930,648 - 106,930,855UniSTSGRCm37
Celera10109,436,055 - 109,436,247UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,440 - 107,494,532UniSTSGRCm38
MGSCv3710106,930,496 - 106,931,588UniSTSGRCm37
Celera10109,435,903 - 109,436,980UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,432 - 107,494,288UniSTSGRCm38
MGSCv3710106,930,488 - 106,931,344UniSTSGRCm37
Celera10109,435,895 - 109,436,736UniSTS
Cytogenetic Map10D1UniSTS
cM Map1059.0UniSTS
Myf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10D1UniSTS
Myf6  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3810107,493,435 - 107,493,904UniSTSGRCm38
MGSCv3710106,930,491 - 106,930,960UniSTSGRCm37
Celera10109,435,898 - 109,436,352UniSTS
Cytogenetic Map10D1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357740Obsty3_mobesity 3 (mouse)Not determined108359714116355075Mouse
1302067Scc9_mcolon tumor susceptibility 9 (mouse)Not determined1018383585125739363Mouse
27226772Tibl13_mtibia length 13, 10 week (mouse)1019000000129800000Mouse
1558757Eae34_mexperimental allergic encephalomyelitis susceptibility 34 (mouse)Not determined1021532255114381325Mouse
26884426Cvht1_mcranial vault height 1, 5 week (mouse)1024800000121200000Mouse
27095911Pglq15_mpelvic girdle length QTL 15, 16 week (mouse)1039300000129800000Mouse
27226764Tibl19_mtibia length 19, 16 week (mouse)1039300000129800000Mouse
26884411Bzwq8_mbi-zygomatic width QTL 8, 10 week (mouse)1045000000116100000Mouse
26884407Bzwq14_mbi-zygomatic width QTL 14, 16 wee (mouse)1045600000120800000Mouse
26884450Sklq15_mskull length QTL 15, 16 week (mouse)1059500000122500000Mouse
13208560Wght9_mweight 9 (mouse)1060000000121000000Mouse
26884424Zlq9_mzygomatic length QTL 9, 16 week (mouse)1064100000116100000Mouse
26884447Sklq9_mskull length QTL 9, 10 week (mouse)1067500000111900000Mouse
26884430Zlq5_mzygomatic length QTL 5, 10 week (mouse)1068000000125000000Mouse
26884405Huml2_mhumerus length 2, 5 week (mouse)1069900000132500000Mouse
11039497Ltpr5a_mLeishmania tropica response 5a (mouse)1073671039107671185Mouse
11353832Pcholq4_mplasma cholesterol QTL 4 (mouse)1074151384125680038Mouse
11353843Gluq1_mblood glucose QTL 1 (mouse)1074151384125680038Mouse
1300975Fembrs3_mfemur breaking strength 3 (mouse)Not determined1075502706109502905Mouse
4142137Femwf3_mfemur work to failure 3 (mouse)Not determined75502706109502905Mouse
1357632Vtbt9_mvertebral trabecular bone trait 9 (mouse)Not determined1075502706109502905Mouse
11251717Siim1_mstress induced immobility 1 (mouse)1078545406112545406Mouse
14747004Mancz8_mmandible centroid size 8 (mouse)1082242550116242550Mouse
1301165Lith7_mlithogenic gene 7 (mouse)Not determined1082473556116473795Mouse
11059550Lmr32a_mleishmaniasis resistance 32a (mouse)1082473556116473795Mouse
11059551Lmr32b_mleishmaniasis resistance 32b (mouse)1082473556116473795Mouse
11059553Lmr32d_mleishmaniasis resistance 32d (mouse)1082473556116473795Mouse
11059554Lmr32e_mleishmaniasis resistance 32e (mouse)1082473556116473795Mouse
11059555Lmr32f_mleishmaniasis resistance 32f (mouse)1082473556116473795Mouse
10043881Adip24_madiposity 24 (mouse)Not determined1082556941116557090Mouse
4141054mwfh_mmodifier of white forlock hypopigmentation (mouse)Not determined83181141117181274Mouse
1357779Tesq3_mtestis weight QTL 3 (mouse)Not determined1084243786122205623Mouse
4141479W10q8_mweight 10 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4141387Lgaq5_mlate growth adjusted QTL 5 (mouse)Not determined84243786122205623Mouse
4142496W6q8_mweight 6 weeks QTL 8 (mouse)Not determined84243786122205623Mouse
4142365Egq9_mearly growth QTL 9 (mouse)Not determined84243786122205623Mouse
1357594Estoq3_membryo survival total QTL 3 (mouse)Not determined1084243786122205623Mouse
1357622Espq3_membryo survival preimplantation QTL 3 (mouse)Not determined1084243786122205623Mouse
1357638Cia29_mcollagen induced arthritis 29 (mouse)Not determined1085619118118661448Mouse
1300797Sluc22_msusceptibility to lung cancer 22 (mouse)Not determined1086877747120877895Mouse
1301520Uvbi1_mUVB induced immunosuppression 1 (mouse)Not determined1087073224121073368Mouse
1300908Insq4_minsulin QTL 4 (mouse)Not determined1087073224121073368Mouse
1300921Skl4_mskeletal size (tail length) 4 (mouse)Not determined1088252393122252530Mouse
4142386Tgq20_mtriglyceride QTL 20 (mouse)Not determined89000595123000595Mouse
1301758Fcsa3_mfemoral cross-sectional area 3 (mouse)Not determined1090091790124091893Mouse
11039516Ltpr5_mLeishmania tropica response 5 (mouse)1090671039125739363Mouse
13208554Lgth11_mbody length 11 (mouse)1091000000121000000Mouse
4142074Tmevp2_mTheiler's murine encephalomyelitis virus persistence 2 (mouse)Not determined92894079111732414Mouse
4142461Bmd25_mbone mineral density 25 (mouse)Not determined1097381196130694993Mouse
1357544Vtbt10_mvertebral trabecular bone trait 10 (mouse)Not determined1097381196130694993Mouse
11533919Mvb4_mmodifier of vibrator 4 (mouse)397381196130694993Mouse
11533921Mvb2_mmodifier of vibrator 2 (mouse)1097381196130694993Mouse
12880413V125Dq9_mvitamin D active form serum level QTL 9 (mouse)1097700000130694993Mouse
4141402T2dm1sa_mtype 2 diabetes mellitus 1 in SMXA RI mice (mouse)Not determined97922739130694993Mouse
11040593Lmr5e_mleishmaniasis resistance 5e (mouse)1099384730130694993Mouse
11040595Lmr5c_mleishmaniasis resistance 5c (mouse)1099384730130694993Mouse
11040597Lmr5a_mleishmaniasis resistance 5a (mouse)1099384730130694993Mouse
11059544Lmr32_mleishmaniasis resistance 32 (mouse)1099473556116384957Mouse
11059552Lmr32c_mleishmaniasis resistance 32c (mouse)1099473556116384957Mouse
1301968Estq4_mestradiol regulated response QTL 4 (mouse)Not determined10101150611130694993Mouse
1357744Cfbw4_mcystic fibrosis body weight 4 (mouse)Not determined10101150611130694993Mouse
1301901Im5_mimmunoregulatory 5 (mouse)Not determined10101661259130694993Mouse
4141361Cfmq3_mcystic fibrosis modifier QTL 3 (mouse)Not determined10101661259130694993Mouse
26884388Skwq7_mskull length QTL 7, 10 week (mouse)10101900000113900000Mouse
1300678Leg2_mlongevity extending gene 2 (mouse)Not determined10102671003130694993Mouse
27226725Tibw1_mtibia width 1, proximal, 5 week (mouse)10102900000123400000Mouse
1301895Exq1_mexploratory and excitability QTL 1 (mouse)Not determined10103011947130694993Mouse
14696727Kidrq2_mkidney weight, right QTL 2 (mouse)10103066603130694993Mouse
4141007Obrq10_mobesity resistance QTL 10 (mouse)Not determined103407822130694993Mouse
4141487Tgq21_mtriglyceride QTL 21 (mouse)Not determined104274116130694993Mouse
14746996Manh69_mmandible shape 69 (mouse)10104927733130694993Mouse
1357482Nhdlq4_mnon-HDL QTL 4 (mouse)Not determined10105205399130694993Mouse
1300679Nociq2_mnociceptive sensitivity inflammatory QTL 2 (mouse)Not determined10105205399130694993Mouse
1302200Sle12_msystematic lupus erythematosus susceptibility 12 (mouse)Not determined10105205399130694993Mouse
4141269Ipng2_mimprinted postnatal growth 2 (mouse)Not determined105252393118661448Mouse
11040594Lmr5f_mleishmaniasis resistance 5f (mouse)10105343808130694993Mouse
11040596Lmr5d_mleishmaniasis resistance 5d (mouse)10105343808130694993Mouse
11040598Lmr5b_mleishmaniasis resistance 5b (mouse)10105343808130694993Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:103
Interacting mature miRNAs:133
Transcripts:ENSMUST00000044210
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000044210   ⟹   ENSMUSP00000047529
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl10107,328,714 - 107,330,598 (-)Ensembl
GRCm38.p6 Ensembl10107,492,853 - 107,494,737 (-)Ensembl
RefSeq Acc Id: NM_008657   ⟹   NP_032683
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3910107,328,709 - 107,330,584 (-)NCBI
GRCm3810107,492,848 - 107,494,723 (-)NCBI
MGSCv3710106,929,916 - 106,931,785 (-)RGD
Celera10109,435,323 - 109,437,177 (-)RGD
cM Map10 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032683   ⟸   NM_008657
- UniProtKB: P15375 (UniProtKB/Swiss-Prot),   Q0VEJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000047529   ⟸   ENSMUST00000044210
Protein Domains
bHLH

Promoters
RGD ID:8673218
Promoter ID:EPDNEW_M14639
Type:initiation region
Name:Myf6_1
Description:Mus musculus myogenic factor 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3810107,494,723 - 107,494,783EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:97253 AgrOrtholog
Ensembl Genes ENSMUSG00000035923 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000047529 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000044210 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.280.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Basic UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  bHLH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Myogenic_factor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:17878 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:97253 ENTREZGENE
NCBI Gene 17878 ENTREZGENE
PANTHER PTHR11534 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Basic UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Myf6 PhenoGen
PROSITE BHLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART BASIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HLH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt MYF6_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q0VEJ7 ENTREZGENE, UniProtKB/TrEMBL