Itpr1 (inositol 1,4,5-trisphosphate receptor 1) - Rat Genome Database

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Gene: Itpr1 (inositol 1,4,5-trisphosphate receptor 1) Mus musculus
Analyze
Symbol: Itpr1
Name: inositol 1,4,5-trisphosphate receptor 1
RGD ID: 10821
MGI Page MGI
Description: Exhibits inositol 1,4,5-trisphosphate receptor activity involved in regulation of postsynaptic cytosolic calcium levels and phosphatidylinositol binding activity. Involved in several processes, including cellular calcium ion homeostasis; intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress; and voluntary musculoskeletal movement. Localizes to several cellular components, including Schaffer collateral - CA1 synapse; endoplasmic reticulum; and nucleus. Is expressed in several structures, including brain; brown fat; genitourinary system; heart; and hemolymphoid system. Human ortholog(s) of this gene implicated in Gillespie syndrome; spinocerebellar ataxia type 15; and spinocerebellar ataxia type 29. Orthologous to human ITPR1 (inositol 1,4,5-trisphosphate receptor type 1); PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17alpha-ethynylestradiol; 2,2',4,4',5,5'-hexachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: D6Pas2; ENSMUSG00000072853; Gm10429; I; inositol 1,4,5-triphosphate receptor 1; inositol 1,4,5-trisphosphate receptor type 1; inositol 1,4,5-trisphosphate-binding protein P400; InsP3R; InsP3R type I; insP3R1; InsP>3
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396108,190,044 - 108,528,077 (+)NCBIGRCm39mm39
GRCm39 Ensembl6108,190,057 - 108,528,070 (+)Ensembl
GRCm386108,213,083 - 108,551,116 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6108,213,096 - 108,551,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv376108,163,090 - 108,501,108 (+)NCBIGRCm37mm9NCBIm37
MGSCv366108,178,895 - 108,516,886 (+)NCBImm8
Celera6110,018,018 - 110,348,287 (+)NCBICelera
Cytogenetic Map6E1- E2NCBI
cM Map649.74NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-methylcholanthrene  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diisothiocyano-trans-stilbene-2,2'-disulfonic acid  (EXP)
4,4'-sulfonyldiphenol  (EXP)
4-amino-2,6-dinitrotoluene  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
7,9-dihydro-1H-purine-2,6,8(3H)-trione  (ISO)
acetaldehyde  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP,ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bexarotene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A5  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
carbon nanotube  (EXP,ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
cocaine  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
cycloheximide  (ISO)
cypermethrin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (EXP,ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
emodin  (ISO)
endosulfan  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
fenvalerate  (EXP)
flavonoids  (ISO)
folic acid  (EXP)
fomepizole  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
glyphosate  (ISO)
GW 4064  (EXP)
halothane  (EXP)
hydrogen peroxide  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
linsidomine  (ISO)
maneb  (EXP)
melatonin  (EXP)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
N-hexadecanoylsphingosine  (EXP)
nevirapine  (ISO)
nickel atom  (ISO)
O-methyleugenol  (ISO)
oxaliplatin  (ISO)
oxycodone  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (EXP,ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
phenethyl caffeate  (EXP)
phenobarbital  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (EXP,ISO)
potassium chloride  (ISO)
procaine  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (EXP)
pyrazinecarboxamide  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
sarin  (ISO)
SB 431542  (ISO)
scopolamine  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
sodium dodecyl sulfate  (ISO)
Soman  (ISO)
succimer  (ISO)
sulindac sulfide  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
tauroursodeoxycholic acid  (EXP)
testosterone  (ISO)
thapsigargin  (EXP)
thioacetamide  (ISO)
toluene  (ISO)
topiramate  (ISO)
topotecan  (ISO)
trichostatin A  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
xestospongin C  (ISO)
XL147  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
acebutolol pharmacodynamics pathway  (ISO)
adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway  (ISO)
Alzheimer's disease pathway  (IEA)
amiodarone pharmacodynamics pathway  (ISO)
amlodipine pharmacodynamics pathway  (ISO)
atenolol pharmacodynamics pathway  (ISO)
betaxolol pharmacodynamics pathway  (ISO)
bisoprolol pharmacodynamics pathway  (ISO)
bupranolol drug pathway  (ISO)
bupranolol pharmacodynamics pathway  (ISO)
calcium transport pathway  (ISO)
calcium/calcium-mediated signaling pathway  (ISO)
carvedilol pharmacodynamics pathway  (ISO)
diltiazem pharmacodynamics pathway  (ISO)
disopyramide pharmacodynamics pathway  (ISO)
dobutamine pharmacodynamics pathway  (ISO)
esmolol pharmacodynamics pathway  (ISO)
flecainde pharmacodynamics pathway  (ISO)
fosphenytoin pharmacodynamics pathway  (ISO)
glutamate signaling pathway  (IEA)
gonadotropin-releasing hormone signaling pathway  (IEA)
Huntington's disease pathway  (IEA)
ibutilide pharmacodynamics pathway  (ISO)
isoprenaline pharmacodynamics pathway  (ISO)
isradipine pharmacodynamics pathway  (ISO)
levobunolol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
long term depression  (IEA)
long term potentiation  (IEA)
metoprolol pharmacodynamics pathway  (ISO)
mexiletine pharmacodynamics pathway  (ISO)
nadolol pharmacodynamics pathway  (ISO)
nebivolol pharmacodynamics pathway  (ISO)
nifedipine pharmacodynamics pathway  (ISO)
nimodipine pharmacodynamics pathway  (ISO)
nisoldipine pharmacodynamics pathway  (ISO)
nitrendipine pharmacodynamics pathway  (ISO)
penbutolol pharmacodynamics pathway  (ISO)
phenytoin pharmacodynamics pathway  (ISO)
phosphatidylinositol 3-kinase signaling pathway  (IEA)
pindolol pharmacodynamics pathway  (ISO)
procainamide pharmacodynamics pathway  (ISO)
propranolol pharmacodynamics pathway  (ISO)
quinidine pharmacodynamics pathway  (ISO)
sotalol pharmacodynamics pathway  (ISO)
timolol pharmacodynamics pathway  (ISO)
verapamil pharmacodynamics pathway  (ISO)

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
1. Di Gregorio E, etal., Cerebellum. 2010 Mar;9(1):115-23.
2. Ginzburg L and Futerman AH, J Neurochem. 2005 Dec;95(6):1619-28. Epub 2005 Nov 8.
3. Haug LS, etal., Neurochem Int. 1998 Aug;33(2):109-19.
4. Haug LS, etal., Neurodegeneration. 1996 Jun;5(2):169-76.
5. Higo T, etal., Neuron. 2010 Dec 9;68(5):865-78.
6. Ikebara JM, etal., PLoS One. 2017 Jan 10;12(1):e0169861. doi: 10.1371/journal.pone.0169861. eCollection 2017.
7. Jurkovicova D, etal., Pflugers Arch. 2007 Jun;454(3):415-25. Epub 2007 Feb 7.
8. Kopil CM, etal., J Biol Chem. 2011 Oct 14;286(41):35998-6010. Epub 2011 Aug 22.
9. Kozaki Y, etal., J Physiol Sci. 2015 Sep;65(5):417-25. doi: 10.1007/s12576-015-0380-9. Epub 2015 May 14.
10. Lee HP, etal., Neuroscience. 2010 May 19;167(3):799-808. Epub 2010 Feb 26.
11. Li M, etal., J Inflamm (Lond). 2011 Jul 21;8(1):18.
12. Marelli C, etal., Arch Neurol. 2011 May;68(5):637-43.
13. Matsumoto M and Nagata E, J Mol Med (Berl). 1999 May;77(5):406-11.
14. MGD and Homologene mouse data transfer
15. MGD data from the GO Consortium
16. MGD IEA
17. Olson TM and Keating MT, J Clin Invest 1996 Jan 15;97(2):528-32.
18. OMIM Disease Annotation Pipeline
19. Pin CL, etal., J Cell Biol 2001 Nov 12;155(4):519-30. Epub 2001 Nov 5.
20. Pipeline to import KEGG annotations from KEGG into RGD
21. Pipeline to import SMPDB annotations from SMPDB into RGD
22. RGD automated import pipeline
23. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
24. RGD automated import pipeline for gene-chemical interactions
25. Tang TS, etal., J Neurosci. 2009 Feb 4;29(5):1257-66.
26. Vanderheyden V, etal., Biochim Biophys Acta. 2009 Jun;1793(6):959-70. doi: 10.1016/j.bbamcr.2008.12.003. Epub 2008 Dec 16.
27. Ye R, etal., J Endocrinol. 2011 Aug;210(2):209-17. Epub 2011 May 12.
28. Zhang SX, etal., Brain Res Mol Brain Res. 1995 Sep;32(2):252-60.
Additional References at PubMed
PMID:1374893   PMID:1648733   PMID:1662017   PMID:1672287   PMID:2554142   PMID:2707487   PMID:2762133   PMID:3141586   PMID:3199205   PMID:7642703   PMID:7755592   PMID:7852357  
PMID:7896292   PMID:7945203   PMID:7946968   PMID:8081710   PMID:8530061   PMID:8538767   PMID:8641130   PMID:8661054   PMID:8663526   PMID:8758947   PMID:8780003   PMID:8863127  
PMID:8900188   PMID:8930970   PMID:8987786   PMID:9124414   PMID:9231705   PMID:9302515   PMID:9615221   PMID:9651219   PMID:9697703   PMID:9808793   PMID:9858485   PMID:9867846  
PMID:9867847   PMID:9986730   PMID:10051594   PMID:10095099   PMID:10098882   PMID:10349636   PMID:10482245   PMID:10505685   PMID:10512203   PMID:10609087   PMID:10811729   PMID:10922068  
PMID:11040263   PMID:11042159   PMID:11076861   PMID:11117745   PMID:11172053   PMID:11217851   PMID:11226314   PMID:11334652   PMID:11368972   PMID:11476286   PMID:11544199   PMID:11700294  
PMID:11860456   PMID:11955285   PMID:11980893   PMID:12110570   PMID:12118121   PMID:12421829   PMID:12442173   PMID:12444087   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12525476  
PMID:12611586   PMID:12617961   PMID:12621039   PMID:12654335   PMID:12828938   PMID:12904583   PMID:12967979   PMID:12972155   PMID:14506248   PMID:14610273   PMID:14687547   PMID:14691545  
PMID:14706453   PMID:14722080   PMID:14741211   PMID:15016804   PMID:15026142   PMID:15184066   PMID:15201137   PMID:15284241   PMID:15364918   PMID:15483626   PMID:15489334   PMID:15579147  
PMID:15583010   PMID:15590059   PMID:15613488   PMID:15652484   PMID:15664189   PMID:15840001   PMID:15890645   PMID:15947791   PMID:16014380   PMID:16091359   PMID:16103111   PMID:16141072  
PMID:16141073   PMID:16286649   PMID:16292983   PMID:16458354   PMID:16512683   PMID:16527252   PMID:16602821   PMID:16606357   PMID:16675011   PMID:16691292   PMID:16731645   PMID:16783635  
PMID:16793548   PMID:16844763   PMID:16925983   PMID:16959763   PMID:16964447   PMID:16973214   PMID:17015433   PMID:17038520   PMID:17050730   PMID:17208939   PMID:17327232   PMID:17416589  
PMID:17482902   PMID:17500595   PMID:17511035   PMID:17581770   PMID:17590087   PMID:17594801   PMID:17635105   PMID:17868032   PMID:17890015   PMID:17915250   PMID:18055048   PMID:18194433  
PMID:18241669   PMID:18287559   PMID:18480159   PMID:18480293   PMID:18483150   PMID:18505727   PMID:18547250   PMID:18621368   PMID:18799693   PMID:18838384   PMID:18946029   PMID:18990696  
PMID:19068129   PMID:19081133   PMID:19120126   PMID:19120137   PMID:19167437   PMID:19706527   PMID:19752026   PMID:19798695   PMID:19799774   PMID:20223265   PMID:20234002   PMID:20375013  
PMID:20375063   PMID:20519450   PMID:20564261   PMID:20713546   PMID:20801505   PMID:20813840   PMID:20824138   PMID:20843799   PMID:21071436   PMID:21267068   PMID:21382375   PMID:21424589  
PMID:21457704   PMID:21465476   PMID:21568942   PMID:21610068   PMID:21689634   PMID:21818117   PMID:21862448   PMID:21873635   PMID:21876165   PMID:22031873   PMID:22033896   PMID:22056561  
PMID:22418950   PMID:22427743   PMID:22495310   PMID:22586220   PMID:22633850   PMID:22819818   PMID:22929228   PMID:22973002   PMID:22992961   PMID:23000618   PMID:23058917   PMID:23223241  
PMID:23321785   PMID:23413940   PMID:23463619   PMID:23479737   PMID:23542070   PMID:23597509   PMID:23851254   PMID:23884412   PMID:23884927   PMID:24097979   PMID:24109434   PMID:24374158  
PMID:24491816   PMID:24692207   PMID:24743743   PMID:24828645   PMID:24952961   PMID:25215520   PMID:25242522   PMID:25262337   PMID:25270259   PMID:25332179   PMID:25368151   PMID:25637353  
PMID:25734498   PMID:25737585   PMID:25821909   PMID:25897502   PMID:25917818   PMID:26072023   PMID:26124274   PMID:26168218   PMID:26259730   PMID:26611753   PMID:26711343   PMID:26822703  
PMID:27053113   PMID:27062503   PMID:27108798   PMID:27402766   PMID:27514653   PMID:27777977   PMID:28211945   PMID:28413018   PMID:28419336   PMID:28495882   PMID:28578927   PMID:28598420  
PMID:28607044   PMID:29111324   PMID:29388468   PMID:30122316   PMID:30135210   PMID:30196744   PMID:30251688   PMID:30382364   PMID:30550785   PMID:30562941   PMID:30659110   PMID:30786075  
PMID:30995482   PMID:31040226   PMID:31073041   PMID:31256144   PMID:31391379   PMID:31491533   PMID:31664108   PMID:32123907   PMID:32161359   PMID:32320395   PMID:32325033   PMID:32675284  
PMID:32770009  


Genomics

Comparative Map Data
Itpr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396108,190,044 - 108,528,077 (+)NCBIGRCm39mm39
GRCm39 Ensembl6108,190,057 - 108,528,070 (+)Ensembl
GRCm386108,213,083 - 108,551,116 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6108,213,096 - 108,551,109 (+)EnsemblGRCm38mm10GRCm38
MGSCv376108,163,090 - 108,501,108 (+)NCBIGRCm37mm9NCBIm37
MGSCv366108,178,895 - 108,516,886 (+)NCBImm8
Celera6110,018,018 - 110,348,287 (+)NCBICelera
Cytogenetic Map6E1- E2NCBI
cM Map649.74NCBI
ITPR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl34,493,345 - 4,847,840 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl34,493,345 - 4,847,506 (+)EnsemblGRCh38hg38GRCh38
GRCh3834,493,348 - 4,847,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3734,535,032 - 4,889,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3634,510,034 - 4,864,286 (+)NCBINCBI36hg18NCBI36
Build 3434,510,135 - 4,864,079NCBI
Celera34,473,120 - 4,827,522 (+)NCBI
Cytogenetic Map3p26.1NCBI
HuRef34,468,779 - 4,822,934 (+)NCBIHuRef
CHM1_134,485,103 - 4,839,760 (+)NCBICHM1_1
Itpr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24141,187,377 - 141,554,240 (+)NCBI
Rnor_6.0 Ensembl4140,247,313 - 140,580,748 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04140,247,297 - 140,580,749 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04204,714,729 - 205,047,901 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44143,705,360 - 144,030,051NCBIRGSC3.4rn4RGSC3.4
Celera4129,839,611 - 130,162,657 (+)NCBICelera
RH 3.4 Map4 RGD
Cytogenetic Map4q41NCBI
ITPR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.134,549,775 - 4,904,811 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl34,572,921 - 4,904,811 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v034,448,574 - 4,802,545 (+)NCBIMhudiblu_PPA_v0panPan3
ITPR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12012,746,171 - 13,065,256 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2012,747,315 - 13,064,198 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2012,719,920 - 13,038,750 (-)NCBI
ROS_Cfam_1.02012,789,247 - 13,108,309 (-)NCBI
UMICH_Zoey_3.12012,494,231 - 12,813,462 (-)NCBI
UNSW_CanFamBas_1.02012,835,196 - 13,153,754 (-)NCBI
UU_Cfam_GSD_1.02012,821,769 - 13,140,816 (-)NCBI
Itpr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494210,941,137 - 11,243,016 (+)NCBI
SpeTri2.0NW_0049365773,896,455 - 4,198,396 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITPR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1361,068,126 - 61,398,908 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11361,068,131 - 61,398,918 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21367,499,295 - 67,702,956 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ITPR1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12240,574,569 - 40,925,857 (+)NCBI
ChlSab1.1 Ensembl2240,574,374 - 40,926,842 (+)Ensembl
Itpr1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477314,856,803 - 15,193,173 (+)NCBI

Position Markers
23.MMHAP7FLH2.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386108,464,172 - 108,464,334UniSTSGRCm38
MGSCv376108,414,166 - 108,414,328UniSTSGRCm37
Celera6110,262,372 - 110,262,534UniSTS
Cytogenetic Map6E1-E2UniSTS
Whitehead_YAC6 UniSTS
33.MMHAP69FLC6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386108,305,134 - 108,305,301UniSTSGRCm38
MGSCv376108,255,128 - 108,255,295UniSTSGRCm37
Celera6110,102,698 - 110,102,865UniSTS
Cytogenetic Map6E1-E2UniSTS
Whitehead_YAC6 UniSTS
Itpr1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386108,550,828 - 108,550,953UniSTSGRCm38
MGSCv376108,500,822 - 108,500,947UniSTSGRCm37
Celera6110,348,001 - 110,348,126UniSTS
Cytogenetic Map6E1-E2UniSTS
cM Map648.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)61117500000Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139100000Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645314059128835032Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46935985136423692Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648720000125360000Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648720000148450000Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648726556125356785Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652161713116155267Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673500000134700000Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675607306109607450Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675716503109716697Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676463949110464093Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678629504121115387Mouse
10043864T2dm4sa_mtype 2 diabetes mellitus 4 in SMXA RI mice (mouse)Not determined683713869147052561Mouse
11251720Ewc4_methanol withdrawal and consumption 4 (mouse)684122513118122513Mouse
1301687Mnic2_mmacronutrient intake (mouse)Not determined686806805113544602Mouse
1301744Hdlq11_mHDL QTL 11 (mouse)Not determined687503360121503555Mouse
1301262Gasa3_mgastritis type A susceptibility locus 3 (mouse)Not determined689005405123005603Mouse
1301244Ichs_mimmediate cutaneous hypersensitivity QTL (mouse)Not determined690795610124795846Mouse
4141578Obrq1_mobesity resistance QTL 1 (mouse)Not determined92607306112004738Mouse
11353842Bmiq4_mbody mass index QTL 4 (mouse)692607306146429238Mouse
1301292Cfbw2_mcystic fibrosis body weight 2 (mouse)Not determined695004651129004738Mouse
1300704Cia3_mcollagen induced arthritis QTL 3 (mouse)Not determined696347325130347522Mouse
11040599Lmr4b_mleishmaniasis resistance 4b (mouse)696347325130347522Mouse
4141940W6q5_mweight 6 weeks QTL 5 (mouse)Not determined96655951146633626Mouse
4142416Egq11_mearly growth QTL 11 (mouse)Not determined96655951146633626Mouse
1357555Tesq2_mtestis weight QTL 2 (mouse)Not determined696655951146633626Mouse
10043923Bhr7_mbronchial hyperresponsiveness 7 (mouse)Not determined698242853132242977Mouse
1301518Bbaa5_mB.burgdorferi-associated arthritis 5 (mouse)Not determined698506837145935444Mouse
1301923Lith6_mlithogenic gene 6 (mouse)Not determined698717516132717715Mouse
1301915Chab3_mcholesterol absorption 3 (mouse)Not determined698931748132940036Mouse
1302131Bmd8_mbone mineral density 8 (mouse)Not determined699155128133155267Mouse
1300887Pabr1_mplasma apolipoprotein B (human) regulator 1 (mouse)Not determined6103777444136423692Mouse
12910776Hcga4b_mhome cage activity 4b (mouse)6104503360110960065Mouse
1301509Sluc3_msusceptibility to lung cancer 3 (mouse)Not determined6104503360127042975Mouse
1357806Aaj3_manxiety in A/J 3 (mouse)Not determined6104503360136423692Mouse
1357793Pnhdlc1_mplasma non-HDL cholesterol 1 (mouse)Not determined6105564822114368849Mouse
4141699Ibdq2_minflammatory bowel disease QTL 2 (mouse)Not determined106005405120917141Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1033
Count of miRNA genes:496
Interacting mature miRNAs:633
Transcripts:ENSMUST00000032192
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036165883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC120411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC153986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC156506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH001976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY857958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ180028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU705754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX633137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY145967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB521690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF168791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF539692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF744794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ236273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK636937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN459019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN692248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D78171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN176734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV652411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M21530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S75867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000032192   ⟹   ENSMUSP00000032192
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,213,096 - 108,551,109 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203262   ⟹   ENSMUSP00000145177
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,416,804 - 108,440,687 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203288
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,508,313 - 108,512,930 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203530
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,493,802 - 108,499,634 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203615   ⟹   ENSMUSP00000144880
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,213,202 - 108,551,109 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203638   ⟹   ENSMUSP00000145522
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,416,871 - 108,473,640 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203687   ⟹   ENSMUSP00000145339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,417,877 - 108,440,642 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203936   ⟹   ENSMUSP00000145526
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,356,254 - 108,377,803 (+)Ensembl
RefSeq Acc Id: ENSMUST00000203995
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,252,958 - 108,393,000 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205005
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,518,732 - 108,519,672 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205048
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,458,703 - 108,471,129 (+)Ensembl
RefSeq Acc Id: ENSMUST00000205053
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,415,270 - 108,419,001 (+)Ensembl
RefSeq Acc Id: ENSMUST00000212125   ⟹   ENSMUSP00000148284
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl6108,387,434 - 108,401,468 (+)Ensembl
RefSeq Acc Id: NM_010585   ⟹   NP_034715
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,057 - 108,528,077 (+)NCBI
GRCm386108,213,096 - 108,551,116 (+)NCBI
MGSCv376108,163,090 - 108,501,108 (+)RGD
Celera6110,018,018 - 110,348,289 (+)ENTREZGENE
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505623   ⟹   XP_006505686
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505624   ⟹   XP_006505687
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505625   ⟹   XP_006505688
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505626   ⟹   XP_006505689
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505627   ⟹   XP_006505690
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505628   ⟹   XP_006505691
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505629   ⟹   XP_006505692
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505630   ⟹   XP_006505693
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505631   ⟹   XP_006505694
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,526,803 (+)NCBI
GRCm386108,213,083 - 108,549,842 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505632   ⟹   XP_006505695
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505633   ⟹   XP_006505696
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505636   ⟹   XP_006505699
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505637   ⟹   XP_006505700
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321407   ⟹   XP_017176896
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321408   ⟹   XP_017176897
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321409   ⟹   XP_017176898
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321410   ⟹   XP_017176899
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,528,075 (+)NCBI
GRCm386108,213,083 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030255199   ⟹   XP_030111059
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,314,379 - 108,528,075 (+)NCBI
GRCm386108,337,418 - 108,551,114 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036165883   ⟹   XP_036021776
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396108,190,044 - 108,393,534 (+)NCBI
Protein Sequences
Protein RefSeqs NP_034715 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505686 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505687 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505688 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505689 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505690 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505691 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505692 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505693 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505694 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505695 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505696 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505699 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505700 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176896 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176897 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176898 (Get FASTA)   NCBI Sequence Viewer  
  XP_017176899 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111059 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021776 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA39316 (Get FASTA)   NCBI Sequence Viewer  
  AAA39317 (Get FASTA)   NCBI Sequence Viewer  
  AAA88319 (Get FASTA)   NCBI Sequence Viewer  
  AAH03271 (Get FASTA)   NCBI Sequence Viewer  
  AAH68269 (Get FASTA)   NCBI Sequence Viewer  
  BAC32085 (Get FASTA)   NCBI Sequence Viewer  
  BAC33138 (Get FASTA)   NCBI Sequence Viewer  
  BAC33514 (Get FASTA)   NCBI Sequence Viewer  
  BAE23370 (Get FASTA)   NCBI Sequence Viewer  
  CAA33433 (Get FASTA)   NCBI Sequence Viewer  
  EDK99408 (Get FASTA)   NCBI Sequence Viewer  
  EDK99409 (Get FASTA)   NCBI Sequence Viewer  
  P11881 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_034715   ⟸   NM_010585
- UniProtKB: P11881 (UniProtKB/Swiss-Prot),   Q3UVA1 (UniProtKB/TrEMBL),   Q8BQN0 (UniProtKB/TrEMBL),   Q8C7X9 (UniProtKB/TrEMBL),   Q8C8N0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505686   ⟸   XM_006505623
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505690   ⟸   XM_006505627
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_006505687   ⟸   XM_006505624
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006505688   ⟸   XM_006505625
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006505695   ⟸   XM_006505632
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_006505691   ⟸   XM_006505628
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_006505692   ⟸   XM_006505629
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_006505696   ⟸   XM_006505633
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_006505699   ⟸   XM_006505636
- Peptide Label: isoform X18
- UniProtKB: P11881 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505689   ⟸   XM_006505626
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006505693   ⟸   XM_006505630
- Peptide Label: isoform X9
- UniProtKB: P11881 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505700   ⟸   XM_006505637
- Peptide Label: isoform X19
- UniProtKB: P11881 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505694   ⟸   XM_006505631
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_017176896   ⟸   XM_017321407
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017176897   ⟸   XM_017321408
- Peptide Label: isoform X15
- UniProtKB: P11881 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017176898   ⟸   XM_017321409
- Peptide Label: isoform X16
- Sequence:
RefSeq Acc Id: XP_017176899   ⟸   XM_017321410
- Peptide Label: isoform X17
- UniProtKB: P11881 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030111059   ⟸   XM_030255199
- Peptide Label: isoform X13
RefSeq Acc Id: ENSMUSP00000145339   ⟸   ENSMUST00000203687
RefSeq Acc Id: ENSMUSP00000144880   ⟸   ENSMUST00000203615
RefSeq Acc Id: ENSMUSP00000145522   ⟸   ENSMUST00000203638
RefSeq Acc Id: ENSMUSP00000145526   ⟸   ENSMUST00000203936
RefSeq Acc Id: ENSMUSP00000145177   ⟸   ENSMUST00000203262
RefSeq Acc Id: ENSMUSP00000032192   ⟸   ENSMUST00000032192
RefSeq Acc Id: ENSMUSP00000148284   ⟸   ENSMUST00000212125
RefSeq Acc Id: XP_036021776   ⟸   XM_036165883
- Peptide Label: isoform X14
Protein Domains
Ion_trans   MIR

Promoters
RGD ID:6839514
Promoter ID:MM_KWN:47099
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000032192,   ENSMUST00000113204,   ENSMUST00000113207,   ENSMUST00000113208,   NM_010585,   UC009DDG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366108,162,736 - 108,163,236 (+)MPROMDB
RGD ID:6848004
Promoter ID:MM_ACW:42256
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:ITPR1.OSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366108,163,746 - 108,164,246 (+)MPROMDB
RGD ID:6839515
Promoter ID:MM_KWN:47100
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver,   Lung
Transcripts:UC009DDI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366108,202,546 - 108,203,097 (+)MPROMDB
RGD ID:6890582
Promoter ID:EPDNEW_M8742
Type:single initiation site
Name:Itpr1_1
Description:Mus musculus inositol 1,4,5-trisphosphate receptor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386108,213,096 - 108,213,156EPDNEW
RGD ID:6839516
Promoter ID:MM_KWN:47101
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC009DDJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366108,366,391 - 108,366,891 (+)MPROMDB
RGD ID:6839358
Promoter ID:MM_KWN:47102
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   Liver
Transcripts:AK136460_GM10429
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366108,420,556 - 108,423,057 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96623 AgrOrtholog
Ensembl Genes ENSMUSG00000030102 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000032192 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000144880 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000145177 UniProtKB/TrEMBL
  ENSMUSP00000145339 UniProtKB/TrEMBL
  ENSMUSP00000145522 UniProtKB/TrEMBL
  ENSMUSP00000145526 UniProtKB/TrEMBL
  ENSMUSP00000148284 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000032192 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203262 UniProtKB/TrEMBL
  ENSMUST00000203615 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000203638 UniProtKB/TrEMBL
  ENSMUST00000203687 UniProtKB/TrEMBL
  ENSMUST00000203936 UniProtKB/TrEMBL
  ENSMUST00000212125 UniProtKB/TrEMBL
InterPro Ins145_P3_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  InsP3_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIR_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIR_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIH_assoc-dom UniProtKB/Swiss-Prot
  RIH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RyR/IP3R_RIH_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16438 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:96623 ENTREZGENE
NCBI Gene 16438 ENTREZGENE
Pfam Ins145_P3_rec UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ion_trans UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIH_assoc UniProtKB/Swiss-Prot
  RYDR_ITPR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB ITPR1 RGD
PhenoGen Itpr1 PhenoGen
PRINTS INSP3RECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART MIR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF100909 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF82109 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SVN2_MOUSE UniProtKB/TrEMBL
  A0A0N4SW22_MOUSE UniProtKB/TrEMBL
  A0A0N4SWH7_MOUSE UniProtKB/TrEMBL
  A0A0N4SWI0_MOUSE UniProtKB/TrEMBL
  A0A1D5RLA1_MOUSE UniProtKB/TrEMBL
  ITPR1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UVA1 ENTREZGENE, UniProtKB/TrEMBL
  Q3UWC7_MOUSE UniProtKB/TrEMBL
  Q6NV80_MOUSE UniProtKB/TrEMBL
  Q8BQN0 ENTREZGENE, UniProtKB/TrEMBL
  Q8C7X9 ENTREZGENE, UniProtKB/TrEMBL
  Q8C8N0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary P20943 UniProtKB/Swiss-Prot
  Q99LG5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Itpr1  inositol 1,4,5-trisphosphate receptor 1  Gm10429  predicted gene 10429  Data Merged 737654 PROVISIONAL
2011-07-27 Itpr1  inositol 1,4,5-trisphosphate receptor 1  Itpr1  inositol 1,4,5-triphosphate receptor 1  Symbol and/or name change 5135510 APPROVED