Itga5 (integrin alpha 5 (fibronectin receptor alpha)) - Rat Genome Database

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Gene: Itga5 (integrin alpha 5 (fibronectin receptor alpha)) Mus musculus
Analyze
Symbol: Itga5
Name: integrin alpha 5 (fibronectin receptor alpha)
RGD ID: 10817
MGI Page MGI
Description: Enables integrin binding activity. Involved in regulation of angiogenesis. Acts upstream of or within several processes, including cell-cell adhesion mediated by integrin; cell-substrate junction assembly; and heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules. Located in several cellular components, including Golgi apparatus; endoplasmic reticulum; and external side of plasma membrane. Is expressed in several structures, including alimentary system; brain; embryo mesenchyme; eye; and genitourinary system. Orthologous to human ITGA5 (integrin subunit alpha 5).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: CD49 antigen-like family member E; Cd49e; F; fibronectin receptor alpha polypeptide; fibronectin receptor subunit alpha; Fnra; integrin alpha-5; integrin alpha-F; VLA5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,252,713 - 103,275,218 (-)NCBIGRCm39mm39
GRCm39 Ensembl15103,252,713 - 103,275,190 (-)Ensembl
GRCm3815103,344,286 - 103,366,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,344,286 - 103,366,763 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715103,174,717 - 103,197,179 (-)NCBIGRCm37mm9NCBIm37
MGSCv3615103,172,320 - 103,194,797 (-)NCBImm8
Celera15105,510,278 - 105,532,530 (-)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.9NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (ISO)
2,6-dinitrotoluene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
4-vinylcyclohexene dioxide  (EXP)
5-aza-2'-deoxycytidine  (EXP,ISO)
5-bromo-2'-deoxyuridine  (ISO)
5-chloro-7-iodoquinolin-8-ol  (ISO)
acetone  (ISO)
acetylsalicylic acid  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aluminium oxide  (ISO)
amphetamine  (ISO)
Arg-Gly-Asp  (ISO)
aripiprazole  (ISO)
aristolochic acid  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
atrazine  (ISO)
benomyl  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A5  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
capsaicin  (ISO)
carbendazim  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cortisol  (ISO)
D-glucose  (ISO)
DDT  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diallyl trisulfide  (ISO)
diazepam  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
fenamidone  (EXP)
folic acid  (ISO)
furosemide  (ISO)
genistein  (EXP)
glucose  (ISO)
glyphosate  (ISO)
heptachlor  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
leuprolide  (ISO)
lipopolysaccharide  (EXP)
LY294002  (ISO)
magnesium atom  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
nitrofen  (ISO)
ozone  (ISO)
pentane-2,3-dione  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
phytoestrogen  (ISO)
potassium chromate  (ISO)
progesterone  (ISO)
quercetin  (ISO)
quinoline  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenate  (EXP,ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
Soman  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetracycline  (ISO)
titanium dioxide  (EXP,ISO)
topotecan  (ISO)
trichloroethene  (EXP)
Triptolide  (EXP,ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Additional References at PubMed
PMID:1354638   PMID:1431091   PMID:2523953   PMID:7508365   PMID:7522915   PMID:7691492   PMID:7919661   PMID:8026885   PMID:8306881   PMID:8521519   PMID:8530040   PMID:8557754  
PMID:8601592   PMID:8663265   PMID:8821033   PMID:8918453   PMID:8930896   PMID:9334279   PMID:9485045   PMID:9545508   PMID:9553049   PMID:9686317   PMID:9813102   PMID:9858678  
PMID:9925758   PMID:10090148   PMID:10091056   PMID:10206722   PMID:10349636   PMID:10373015   PMID:10545236   PMID:10700190   PMID:10922068   PMID:11035110   PMID:11042159   PMID:11076861  
PMID:11217851   PMID:11307167   PMID:11319856   PMID:11431367   PMID:11809759   PMID:11875466   PMID:12189152   PMID:12393886   PMID:12477932   PMID:12486108   PMID:12520002   PMID:12571105  
PMID:12837282   PMID:12867986   PMID:12904471   PMID:12904583   PMID:14516674   PMID:14516789   PMID:14998999   PMID:15162427   PMID:15329344   PMID:15331325   PMID:15366018   PMID:15368439  
PMID:15370361   PMID:15576410   PMID:15615721   PMID:15688013   PMID:15739233   PMID:15782199   PMID:15878328   PMID:15979576   PMID:16000373   PMID:16003770   PMID:16087869   PMID:16141072  
PMID:16141073   PMID:16154099   PMID:16179420   PMID:16319112   PMID:16369019   PMID:16527907   PMID:16533505   PMID:16571912   PMID:16688531   PMID:16751104   PMID:16940508   PMID:17018844  
PMID:17095723   PMID:17306631   PMID:17510195   PMID:17548654   PMID:17562714   PMID:17664272   PMID:17716972   PMID:17904217   PMID:18042290   PMID:18058911   PMID:18234903   PMID:18289871  
PMID:18343155   PMID:18346467   PMID:18431835   PMID:18541700   PMID:18599437   PMID:18611961   PMID:18794329   PMID:18799693   PMID:18804439   PMID:19118216   PMID:19144663   PMID:19347869  
PMID:19416892   PMID:19443705   PMID:19460962   PMID:19686679   PMID:19839056   PMID:19887442   PMID:20052668   PMID:20081050   PMID:20087368   PMID:20093499   PMID:20097849   PMID:20105241  
PMID:20151413   PMID:20160019   PMID:20164359   PMID:20201059   PMID:20382852   PMID:20385709   PMID:20406330   PMID:20570943   PMID:20668528   PMID:20720202   PMID:20807571   PMID:20956802  
PMID:21084629   PMID:21107430   PMID:21267068   PMID:21335239   PMID:21349584   PMID:21401944   PMID:21466802   PMID:21693517   PMID:21708300   PMID:21747167   PMID:21750040   PMID:21765460  
PMID:21824471   PMID:21880786   PMID:21936403   PMID:21947080   PMID:21953216   PMID:22037761   PMID:22276210   PMID:22287577   PMID:22331870   PMID:22648512   PMID:22687584   PMID:22721769  
PMID:22908313   PMID:23023225   PMID:23152823   PMID:23305098   PMID:23595732   PMID:23608456   PMID:23708002   PMID:23742148   PMID:23791818   PMID:23814067   PMID:23933892   PMID:24056042  
PMID:24163432   PMID:24256316   PMID:24463276   PMID:24472646   PMID:24833794   PMID:24858485   PMID:24928429   PMID:25143392   PMID:25242040   PMID:25670798   PMID:25807551   PMID:26010756  
PMID:26025398   PMID:26120030   PMID:26243869   PMID:26434918   PMID:26483551   PMID:26496610   PMID:26542011   PMID:26552887   PMID:26586223   PMID:26661237   PMID:26733684   PMID:26845241  
PMID:26930384   PMID:27043085   PMID:27169579   PMID:27180663   PMID:27280771   PMID:27349568   PMID:27423389   PMID:27595237   PMID:27599164   PMID:27718357   PMID:28077433   PMID:28294115  
PMID:28370666   PMID:28383553   PMID:28473400   PMID:28806779   PMID:28864764   PMID:29162887   PMID:29182679   PMID:29382667   PMID:29452567   PMID:30142160   PMID:30185785   PMID:30333137  
PMID:30354234   PMID:30487608   PMID:31582413   PMID:31887343   PMID:32049039   PMID:32294178   PMID:32302585   PMID:32532986   PMID:32673515   PMID:32859730  


Genomics

Comparative Map Data
Itga5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915103,252,713 - 103,275,218 (-)NCBIGRCm39mm39
GRCm39 Ensembl15103,252,713 - 103,275,190 (-)Ensembl
GRCm3815103,344,286 - 103,366,791 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15103,344,286 - 103,366,763 (-)EnsemblGRCm38mm10GRCm38
MGSCv3715103,174,717 - 103,197,179 (-)NCBIGRCm37mm9NCBIm37
MGSCv3615103,172,320 - 103,194,797 (-)NCBImm8
Celera15105,510,278 - 105,532,530 (-)NCBICelera
Cytogenetic Map15F3NCBI
cM Map1558.9NCBI
ITGA5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1254,395,261 - 54,419,266 (-)EnsemblGRCh38hg38GRCh38
GRCh381254,395,261 - 54,419,266 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371254,789,045 - 54,813,050 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361253,075,312 - 53,099,317 (-)NCBINCBI36hg18NCBI36
Build 341253,075,313 - 53,099,317NCBI
Celera1254,440,888 - 54,464,894 (-)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1251,828,142 - 51,852,148 (-)NCBIHuRef
CHM1_11254,755,737 - 54,779,741 (-)NCBICHM1_1
Itga5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27134,478,963 - 134,502,837 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl7134,478,968 - 134,502,837 (-)Ensembl
Rnor_6.07144,970,444 - 144,993,652 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,970,444 - 144,993,652 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07142,749,459 - 142,773,323 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47142,254,256 - 142,277,464 (-)NCBIRGSC3.4rn4RGSC3.4
Celera7130,903,975 - 130,927,190 (-)NCBICelera
Cytogenetic Map7q36NCBI
Itga5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554581,632,282 - 1,658,295 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554581,635,554 - 1,657,609 (-)NCBIChiLan1.0ChiLan1.0
ITGA5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11235,052,994 - 35,076,860 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1235,052,994 - 35,075,835 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01234,326,182 - 34,350,050 (+)NCBIMhudiblu_PPA_v0panPan3
ITGA5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.127904,892 - 924,757 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl27904,102 - 924,084 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2745,330,567 - 45,350,366 (-)NCBI
ROS_Cfam_1.027902,131 - 921,978 (+)NCBI
UMICH_Zoey_3.127893,448 - 913,731 (+)NCBI
UNSW_CanFamBas_1.027902,991 - 922,682 (+)NCBI
UU_Cfam_GSD_1.02745,734,450 - 45,754,318 (-)NCBI
Itga5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494561,552,202 - 61,576,027 (+)NCBI
SpeTri2.0NW_00493651211,588,818 - 11,612,580 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ITGA5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl519,586,746 - 19,610,362 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1519,587,361 - 19,610,580 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2520,441,721 - 20,465,338 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ITGA5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11150,507,673 - 50,535,358 (-)NCBI
ChlSab1.1 Ensembl1150,510,714 - 50,535,328 (-)Ensembl
Vero_WHO_p1.0NW_023666037195,501,908 - 195,526,109 (+)NCBI
Itga5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249042,418,140 - 2,439,945 (-)NCBI

Position Markers
AW537678  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815103,344,618 - 103,344,743UniSTSGRCm38
MGSCv3715103,175,049 - 103,175,174UniSTSGRCm37
Celera15105,510,610 - 105,510,735UniSTS
Cytogenetic Map15F3UniSTS
cM Map1557.4UniSTS
Whitehead/MRC_RH14209.86UniSTS
UniSTS:237401  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815103,344,939 - 103,345,085UniSTSGRCm38
MGSCv3715103,175,370 - 103,175,516UniSTSGRCm37
Celera15105,510,931 - 105,511,077UniSTS
Cytogenetic Map15F3UniSTS
cM Map1557.4UniSTS
Itga5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15F3UniSTS
cM Map1557.4UniSTS
Itga5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815103,345,160 - 103,345,352UniSTSGRCm38
MGSCv3715103,175,591 - 103,175,783UniSTSGRCm37
Celera15105,511,152 - 105,511,344UniSTS
Cytogenetic Map15F3UniSTS
cM Map1557.4UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92890759103517472Mouse

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
Mir148bmmu-miR-148b-3pOncomiRDBexternal_infoNANA23233531
Mir31mmu-miR-31-5pOncomiRDBexternal_infoNANA21406558

Predicted Target Of
Summary Value
Count of predictions:429
Count of miRNA genes:318
Interacting mature miRNAs:352
Transcripts:ENSMUST00000023128
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001314041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_010577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC131721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK144921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK192479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK205630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC059829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X15203 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X79003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000023128   ⟹   ENSMUSP00000023128
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15103,252,713 - 103,275,190 (-)Ensembl
GRCm38.p6 Ensembl15103,344,286 - 103,366,763 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215331   ⟹   ENSMUSP00000148865
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15103,252,713 - 103,275,175 (-)Ensembl
GRCm38.p6 Ensembl15103,344,286 - 103,366,748 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230460
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15103,264,353 - 103,265,078 (-)Ensembl
GRCm38.p6 Ensembl15103,355,926 - 103,356,651 (-)Ensembl
RefSeq Acc Id: ENSMUST00000230775
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15103,259,044 - 103,259,805 (-)Ensembl
GRCm38.p6 Ensembl15103,350,617 - 103,351,378 (-)Ensembl
RefSeq Acc Id: NM_001314041   ⟹   NP_001300970
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915103,252,713 - 103,275,218 (-)NCBI
GRCm3815103,344,286 - 103,366,791 (-)NCBI
Sequence:
RefSeq Acc Id: NM_010577   ⟹   NP_034707
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915103,252,713 - 103,275,218 (-)NCBI
GRCm3815103,344,286 - 103,366,791 (-)NCBI
MGSCv3715103,174,717 - 103,197,179 (-)RGD
Celera15105,510,278 - 105,532,530 (-)RGD
cM Map15 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_034707   ⟸   NM_010577
- Peptide Label: isoform 1 preproprotein
- UniProtKB: P11688 (UniProtKB/Swiss-Prot),   Q80YP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001300970   ⟸   NM_001314041
- Peptide Label: isoform 2
- UniProtKB: Q80YP5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000023128   ⟸   ENSMUST00000023128
RefSeq Acc Id: ENSMUSP00000148865   ⟸   ENSMUST00000215331
Protein Domains
Integrin_alpha2

Promoters
RGD ID:6847200
Promoter ID:MM_ACW:19571
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   Liver,   Lung,   MEF_B4
Transcripts:ITGA5.DSEP07,   ITGA5.FSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615103,181,381 - 103,181,881 (-)MPROMDB
RGD ID:6847199
Promoter ID:MM_ACW:19572
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   MEF_B6
Transcripts:ITGA5.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615103,182,369 - 103,182,869 (-)MPROMDB
RGD ID:6847201
Promoter ID:MM_ACW:19573
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   MEF_B4
Transcripts:ITGA5.GSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615103,183,476 - 103,184,187 (-)MPROMDB
RGD ID:6847198
Promoter ID:MM_ACW:19574
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:MEF_B4
Transcripts:ITGA5.CSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615103,187,126 - 103,187,626 (-)MPROMDB
RGD ID:6826112
Promoter ID:MM_KWN:19907
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:UC007XYB.1,   UC007XYC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615103,196,886 - 103,197,437 (-)MPROMDB
RGD ID:8685276
Promoter ID:EPDNEW_M20668
Type:initiation region
Name:Itga5_1
Description:Mus musculus integrin alpha 5 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20669  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815103,366,548 - 103,366,608EPDNEW
RGD ID:8685278
Promoter ID:EPDNEW_M20669
Type:multiple initiation site
Name:Itga5_2
Description:Mus musculus integrin alpha 5 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M20668  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815103,366,791 - 103,366,851EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:96604 AgrOrtholog
Ensembl Genes ENSMUSG00000000555 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000023128 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000148865 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000023128 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000215331 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Int_alpha_beta-p UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_C_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:16402 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:96604 ENTREZGENE
NCBI Gene 16402 ENTREZGENE
Pfam FG-GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Integrin_alpha2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Itga5 PhenoGen
PRINTS INTEGRINA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE FG_GAP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  INTEGRIN_ALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Int_alpha UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF69179 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1L1SQ20_MOUSE UniProtKB/TrEMBL
  ITA5_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3U7M6_MOUSE UniProtKB/TrEMBL
  Q80YP5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9QN40 UniProtKB/Swiss-Prot