Idh3g (isocitrate dehydrogenase 3 (NAD+), gamma) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Idh3g (isocitrate dehydrogenase 3 (NAD+), gamma) Mus musculus
Analyze
Symbol: Idh3g
Name: isocitrate dehydrogenase 3 (NAD+), gamma
RGD ID: 10759
MGI Page MGI
Description: Predicted to enable isocitrate dehydrogenase (NAD+) activity and magnesium ion binding activity. Predicted to be involved in isocitrate metabolic process and tricarboxylic acid cycle. Located in mitochondrion. Is expressed in several structures, including alimentary system; genitourinary system; integumental system; nervous system; and sensory organ. Orthologous to human IDH3G (isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: isocitrate dehydrogenase [NAD] subunit gamma 1, mitochondrial; isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial; isocitric dehydrogenase subunit gamma; NAD(+)-specific ICDH subunit gamma
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,822,569 - 72,830,471 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,822,569 - 72,830,503 (-)EnsemblGRCm39 Ensembl
GRCm38X73,778,963 - 73,786,897 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,778,963 - 73,786,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,024,302 - 71,032,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,031,683 - 70,039,617 (-)NCBIMGSCv36mm8
CeleraX65,031,236 - 65,039,170 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Genomic organization of two novel genes on human Xq28: compact head to head arrangement of IDH gamma and TRAP delta is conserved in rat and mouse. Brenner V, etal., Genomics 1997 Aug 15;44(1):8-14.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. Comparative FISH mapping of mouse and rat homologues of twenty-five human X-linked genes. Kuroiwa A, etal., Cytogenet Cell Genet 1998;81(3-4):208-12.
4. Preparation and properties of mitochondria derived from synaptosomes. Lai JC and Clark JB, Biochem J. 1976 Feb 15;154(2):423-32.
5. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
6. MGDs mouse GO annotations MGD data from the GO Consortium
7. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria. Mootha VK, etal., Cell 2003 Nov 26;115(5):629-40.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:12477932   PMID:12904583   PMID:14555658   PMID:14610273   PMID:14681479   PMID:15572359   PMID:15782199   PMID:16141072  
PMID:16141073   PMID:17626619   PMID:18614015   PMID:18799693   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22083510   PMID:22794259   PMID:23011808   PMID:26697723   PMID:27215380  
PMID:28130547   PMID:28139779   PMID:28245920   PMID:28680878   PMID:29199018   PMID:29222160   PMID:29518331   PMID:30068389   PMID:30550785   PMID:30562941   PMID:32325033   PMID:36293380  
PMID:36417873   PMID:37955350   PMID:38355793  


Genomics

Comparative Map Data
Idh3g
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X72,822,569 - 72,830,471 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX72,822,569 - 72,830,503 (-)EnsemblGRCm39 Ensembl
GRCm38X73,778,963 - 73,786,897 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX73,778,963 - 73,786,897 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X71,024,302 - 71,032,236 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X70,031,683 - 70,039,617 (-)NCBIMGSCv36mm8
CeleraX65,031,236 - 65,039,170 (-)NCBICelera
Cytogenetic MapXA7.3NCBI
cM MapX37.41NCBI
IDH3G
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X153,785,768 - 153,794,375 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX153,785,766 - 153,794,512 (-)EnsemblGRCh38hg38GRCh38
GRCh37X153,051,223 - 153,059,830 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X152,704,415 - 152,713,161 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X152,572,067 - 152,580,814NCBI
CeleraX153,284,902 - 153,293,648 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX141,708,249 - 141,717,006 (-)NCBIHuRef
CHM1_1X152,925,630 - 152,934,387 (-)NCBICHM1_1
T2T-CHM13v2.0X152,059,431 - 152,068,038 (-)NCBIT2T-CHM13v2.0
Idh3g
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X156,666,573 - 156,675,482 (-)NCBIGRCr8
mRatBN7.2X151,515,244 - 151,524,175 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX151,515,247 - 151,524,171 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX153,656,414 - 153,665,320 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X157,219,644 - 157,228,550 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X154,891,468 - 154,900,374 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X156,999,803 - 157,008,735 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX156,999,826 - 157,008,733 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01152,747,878 - 152,757,622 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X159,701,345 - 159,710,254 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X159,776,446 - 159,785,611 (-)NCBI
Celera1136,365,515 - 136,374,301 (+)NCBICelera
Cytogenetic MapXq37NCBI
Idh3g
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955580500,825 - 507,608 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955580500,712 - 507,512 (-)NCBIChiLan1.0ChiLan1.0
IDH3G
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X153,826,443 - 153,835,135 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X153,830,046 - 153,838,677 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X143,336,460 - 143,345,274 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X153,222,309 - 153,231,135 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX153,222,309 - 153,231,135 (-)Ensemblpanpan1.1panPan2
IDH3G
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X121,599,368 - 121,608,707 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX121,599,368 - 121,608,643 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX106,928,530 - 106,937,871 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X124,740,839 - 124,750,181 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX124,740,831 - 124,750,153 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X120,510,113 - 120,519,453 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X123,025,113 - 123,034,451 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X122,787,308 - 122,796,645 (-)NCBIUU_Cfam_GSD_1.0
Idh3g
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X118,928,456 - 118,937,516 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936809666,337 - 675,214 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936809666,231 - 675,279 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IDH3G
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX124,528,585 - 124,537,575 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X124,528,643 - 124,537,570 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X142,093,229 - 142,102,047 (-)NCBISscrofa10.2Sscrofa10.2susScr3
IDH3G
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X128,212,660 - 128,221,637 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606566,079,983 - 66,088,967 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Idh3g
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624946461,780 - 472,336 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624946465,832 - 472,259 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Idh3g
158 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1358
Count of miRNA genes:608
Interacting mature miRNAs:741
Transcripts:ENSMUST00000052761, ENSMUST00000129070, ENSMUST00000129367, ENSMUST00000130119, ENSMUST00000140944, ENSMUST00000142707, ENSMUST00000145341, ENSMUST00000148419, ENSMUST00000156299
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
1357730Hstx1_mhybrid sterility, X chromosome 1 (mouse)Not determinedX7145385277600812Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse

Markers in Region
Idh3g  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic MapXA7.3-BUniSTS
cM MapX29.5UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001356356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_177282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF133093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ748655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK156309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166925 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167131 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC119172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U68564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U73205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000052761   ⟹   ENSMUSP00000056502
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,822,569 - 72,830,503 (-)Ensembl
GRCm38.p6 EnsemblX73,778,963 - 73,786,897 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,822,649 - 72,824,503 (-)Ensembl
GRCm38.p6 EnsemblX73,779,043 - 73,780,897 (-)Ensembl
Ensembl Acc Id: ENSMUST00000129367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,824,194 - 72,825,825 (-)Ensembl
GRCm38.p6 EnsemblX73,780,588 - 73,782,219 (-)Ensembl
Ensembl Acc Id: ENSMUST00000130119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,823,642 - 72,824,418 (-)Ensembl
GRCm38.p6 EnsemblX73,780,036 - 73,780,812 (-)Ensembl
Ensembl Acc Id: ENSMUST00000140944
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,823,680 - 72,830,228 (-)Ensembl
GRCm38.p6 EnsemblX73,780,074 - 73,786,622 (-)Ensembl
Ensembl Acc Id: ENSMUST00000142707
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,824,027 - 72,825,313 (-)Ensembl
GRCm38.p6 EnsemblX73,780,421 - 73,781,707 (-)Ensembl
Ensembl Acc Id: ENSMUST00000145341
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,824,585 - 72,825,974 (-)Ensembl
GRCm38.p6 EnsemblX73,780,979 - 73,782,368 (-)Ensembl
Ensembl Acc Id: ENSMUST00000148419
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,823,276 - 72,824,302 (-)Ensembl
GRCm38.p6 EnsemblX73,779,670 - 73,780,696 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156299
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX72,822,569 - 72,830,503 (-)Ensembl
GRCm38.p6 EnsemblX73,778,963 - 73,786,897 (-)Ensembl
RefSeq Acc Id: NM_001356356   ⟹   NP_001343285
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,471 (-)NCBI
GRCm38X73,778,963 - 73,786,897 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001411511   ⟹   NP_001398440
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,471 (-)NCBI
RefSeq Acc Id: NM_001411513   ⟹   NP_001398442
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,221 (-)NCBI
RefSeq Acc Id: NM_001411516   ⟹   NP_001398445
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,471 (-)NCBI
RefSeq Acc Id: NM_001411517   ⟹   NP_001398446
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,221 (-)NCBI
RefSeq Acc Id: NM_001411518   ⟹   NP_001398447
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,464 (-)NCBI
RefSeq Acc Id: NM_001411519   ⟹   NP_001398448
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,471 (-)NCBI
RefSeq Acc Id: NM_008323   ⟹   NP_032349
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,471 (-)NCBI
GRCm38X73,778,963 - 73,786,897 (-)NCBI
MGSCv37X71,024,302 - 71,032,236 (-)RGD
CeleraX65,031,236 - 65,039,170 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_177282
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,471 (-)NCBI
RefSeq Acc Id: XM_017318392   ⟹   XP_017173881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X72,822,569 - 72,830,246 (-)NCBI
GRCm38X73,778,963 - 73,786,640 (-)NCBI
Sequence:
RefSeq Acc Id: NP_032349   ⟸   NM_008323
- Peptide Label: isoform 1 precursor
- UniProtKB: P70404 (UniProtKB/Swiss-Prot),   Q3TGZ3 (UniProtKB/TrEMBL),   Q684I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017173881   ⟸   XM_017318392
- Peptide Label: isoform X1
- UniProtKB: Q684I8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001343285   ⟸   NM_001356356
- Peptide Label: isoform 2 precursor
- UniProtKB: Q3TKM5 (UniProtKB/TrEMBL),   Q684I8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000056502   ⟸   ENSMUST00000052761
RefSeq Acc Id: NP_001398448   ⟸   NM_001411519
- Peptide Label: isoform 7
RefSeq Acc Id: NP_001398445   ⟸   NM_001411516
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001398440   ⟸   NM_001411511
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001398447   ⟸   NM_001411518
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001398446   ⟸   NM_001411517
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001398442   ⟸   NM_001411513
- Peptide Label: isoform 4
Protein Domains
Isopropylmalate dehydrogenase-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P70404-F1-model_v2 AlphaFold P70404 1-393 view protein structure

Promoters
RGD ID:6845849
Promoter ID:MM_KWN:60734
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000043641,   OTTMUST00000043642,   OTTMUST00000043643
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,026,076 - 71,026,977 (-)MPROMDB
RGD ID:6845848
Promoter ID:MM_KWN:60735
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000043638,   OTTMUST00000043639,   OTTMUST00000043640
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,027,476 - 71,027,976 (-)MPROMDB
RGD ID:6846404
Promoter ID:MM_KWN:60736
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000002090,   NM_001166480,   NM_008323,   NM_009279_SSR4,   OTTMUST00000043631,   OTTMUST00000043632,   OTTMUST00000043633,   OTTMUST00000043634,   OTTMUST00000043635,   OTTMUST00000043636,   OTTMUST00000043637,   OTTMUST00000043664,   UC009TMQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X71,031,356 - 71,034,652 (+)MPROMDB
RGD ID:13680738
Promoter ID:EPDNEW_M24518
Type:initiation region
Name:Idh3g_1
Description:Mus musculus isocitrate dehydrogenase 3 (NAD+), gamma , transcriptvariant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X73,786,865 - 73,786,925EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1099463 AgrOrtholog
Ensembl Genes ENSMUSG00000002010 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000052761 ENTREZGENE
  ENSMUST00000052761.9 UniProtKB/Swiss-Prot
Gene3D-CATH Isopropylmalate Dehydrogenase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro IsoCit/isopropylmalate_DH_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Isocitrate_DH_NAD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IsoPropMal-DH-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15929 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1099463 ENTREZGENE
NCBI Gene 15929 ENTREZGENE
PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ISOCITRATE DEHYDROGENASE [NAD] SUBUNIT GAMMA 1, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ISOCITRATE DEHYDROGENASE [NAD] SUBUNIT GAMMA, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam Iso_dh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Idh3g PhenoGen
PROSITE IDH_IMDH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Iso_dh UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Isocitrate/Isopropylmalate dehydrogenase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt IDHG1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TGZ3 ENTREZGENE, UniProtKB/TrEMBL
  Q3TKM5 ENTREZGENE, UniProtKB/TrEMBL
  Q684I8 ENTREZGENE, UniProtKB/TrEMBL
  Q9CW65_MOUSE UniProtKB/TrEMBL