PSAT1P2 (phosphoserine aminotransferase 1 pseudogene 2) - Rat Genome Database

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Gene: PSAT1P2 (phosphoserine aminotransferase 1 pseudogene 2) Homo sapiens
Analyze
Symbol: PSAT1P2
Name: phosphoserine aminotransferase 1 pseudogene 2
RGD ID: 10755592
HGNC Page HGNC:43988
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: PSAT1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38262,552,270 - 62,553,525 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl262,552,463 - 62,553,434 (-)EnsemblGRCh38hg38GRCh38
GRCh37262,779,405 - 62,780,660 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p15NCBI
CHM1_1262,710,160 - 62,711,131 (-)NCBICHM1_1
T2T-CHM13v2.0262,558,590 - 62,559,845 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in PSAT1P2
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:150
Interacting mature miRNAs:152
Transcripts:ENST00000426107
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 1 1 7 1 154 1 96 70 2 8 113
Below cutoff 406 238 450 119 141 40 1466 231 944 24 418 255 79 306 908

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000426107
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl262,552,463 - 62,553,434 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PSAT1P2 COSMIC
Ensembl Genes ENSG00000232144 Ensembl
GTEx ENSG00000232144 GTEx
HGNC ID HGNC:43988 ENTREZGENE
Human Proteome Map PSAT1P2 Human Proteome Map
NCBI Gene PSAT1P2 ENTREZGENE