Hmmr (hyaluronan mediated motility receptor (RHAMM)) - Rat Genome Database

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Gene: Hmmr (hyaluronan mediated motility receptor (RHAMM)) Mus musculus
Analyze
Symbol: Hmmr
Name: hyaluronan mediated motility receptor (RHAMM)
RGD ID: 10714
MGI Page MGI
Description: Enables cargo receptor activity. Involved in hyaluronan catabolic process and receptor-mediated endocytosis. Predicted to be located in centrosome; cytosol; and spindle. Is expressed in bulbar cushion and testis. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human HMMR (hyaluronan mediated motility receptor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AA386826; CD168; hyaluronan mediated motility receptor; intracellular hyaluronic acid-binding protein; receptor for hyaluronan-mediated motility; Rha; Rhamm
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391140,592,215 - 40,624,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1140,592,222 - 40,624,249 (-)EnsemblGRCm39 Ensembl
GRCm381140,701,388 - 40,733,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1140,701,395 - 40,733,422 (-)EnsemblGRCm38mm10GRCm38
MGSCv371140,514,890 - 40,546,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,545,177 - 40,576,845 (-)NCBIMGSCv36mm8
Celera1144,551,316 - 44,585,491 (-)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (EXP)
1,1-dichloroethene  (EXP)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2-amino-2-deoxy-D-glucopyranose  (ISO)
2-butoxyethanol  (EXP)
2-methylcholine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-methylcholanthrene  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
5-fluorouracil  (ISO)
acetamide  (ISO)
acetylsalicylic acid  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin M1  (ISO)
aldehydo-D-glucosamine  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
alpha-pinene  (ISO)
ammonium chloride  (ISO)
antimycin A  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
azathioprine  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-D-glucosamine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (ISO)
buta-1,3-diene  (EXP)
cadmium dichloride  (ISO)
calcitriol  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (EXP)
chrysene  (EXP)
cisplatin  (EXP,ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (EXP)
coumestrol  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (EXP)
deguelin  (ISO)
diallyl trisulfide  (ISO)
dibutyl phthalate  (EXP,ISO)
dichloroacetic acid  (EXP,ISO)
dicrotophos  (ISO)
dimethylarsinous acid  (ISO)
dimethylselenide  (ISO)
dioxygen  (ISO)
doxorubicin  (EXP,ISO)
Enterolactone  (ISO)
erythromycin estolate  (ISO)
ethanol  (EXP)
flavonoids  (ISO)
formaldehyde  (ISO)
fructose  (EXP)
glucose  (EXP)
glyphosate  (EXP)
hyaluronic acid  (ISO)
hydrogen peroxide  (ISO)
irinotecan  (ISO)
kojic acid  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
lidocaine  (ISO)
lucanthone  (ISO)
mercury dichloride  (ISO)
Mesaconitine  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
O-methyleugenol  (ISO)
ochratoxin A  (ISO)
oxaliplatin  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
palbociclib  (ISO)
paracetamol  (ISO)
paraquat  (ISO)
PCB138  (EXP)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenformin  (ISO)
phenobarbital  (EXP)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
propanal  (ISO)
propiconazole  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
senecionine  (ISO)
Senkirkine  (ISO)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
sodium fluoride  (EXP)
succimer  (EXP)
sulforaphane  (ISO)
sulindac  (ISO)
sunitinib  (ISO)
testosterone  (EXP,ISO)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP)
tetrathiomolybdate(2-)  (ISO)
thioacetamide  (ISO)
topotecan  (ISO)
tremolite asbestos  (EXP)
tributylstannane  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
trovafloxacin  (EXP)
tungsten  (EXP)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vincaleukoblastine  (ISO)
vorinostat  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. MGD IEA MGD IEA
4. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
5. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
6. Mouse MP Annotation Import Pipeline RGD automated import pipeline
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1376732   PMID:1639856   PMID:7490078   PMID:7518470   PMID:7530464   PMID:7590272   PMID:8595891   PMID:8890751   PMID:9556628   PMID:9601097   PMID:9845361   PMID:9889313  
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11596057   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:14534534   PMID:14610273   PMID:15596723  
PMID:15809329   PMID:16141072   PMID:16141073   PMID:17158951   PMID:18174258   PMID:20558733   PMID:21780244   PMID:21940500   PMID:21947782   PMID:22418440   PMID:22889846   PMID:23391595  
PMID:23768790   PMID:24019927   PMID:24194600   PMID:25680957   PMID:25750434   PMID:26528478   PMID:27543603   PMID:28232112   PMID:28994651   PMID:30098420   PMID:30130585   PMID:32165498  
PMID:32518258   PMID:32554809   PMID:33061798   PMID:34044069   PMID:35084365   PMID:37075860   PMID:37405956  


Genomics

Comparative Map Data
Hmmr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391140,592,215 - 40,624,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1140,592,222 - 40,624,249 (-)EnsemblGRCm39 Ensembl
GRCm381140,701,388 - 40,733,464 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1140,701,395 - 40,733,422 (-)EnsemblGRCm38mm10GRCm38
MGSCv371140,514,890 - 40,546,939 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361140,545,177 - 40,576,845 (-)NCBIMGSCv36mm8
Celera1144,551,316 - 44,585,491 (-)NCBICelera
Cytogenetic Map11A5NCBI
cM Map1124.4NCBI
HMMR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385163,460,632 - 163,491,941 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5163,460,203 - 163,491,941 (+)EnsemblGRCh38hg38GRCh38
GRCh375162,887,638 - 162,918,947 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365162,820,241 - 162,851,525 (+)NCBINCBI36Build 36hg18NCBI36
Build 345162,820,240 - 162,851,523NCBI
Celera5158,921,625 - 158,953,052 (+)NCBICelera
Cytogenetic Map5q34NCBI
HuRef5157,987,202 - 158,018,630 (+)NCBIHuRef
CHM1_15162,319,984 - 162,351,413 (+)NCBICHM1_1
T2T-CHM13v2.05163,995,809 - 164,027,111 (+)NCBIT2T-CHM13v2.0
Hmmr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81025,635,249 - 25,665,389 (-)NCBIGRCr8
mRatBN7.21025,132,933 - 25,163,029 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1025,132,977 - 25,163,060 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1029,896,163 - 29,925,311 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01029,384,690 - 29,413,838 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01024,871,353 - 24,900,499 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01025,861,490 - 25,890,639 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1025,861,490 - 25,890,639 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01025,712,357 - 25,740,811 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41025,733,375 - 25,762,825 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11025,734,423 - 25,763,874 (-)NCBI
Celera1024,693,386 - 24,722,348 (-)NCBICelera
Cytogenetic Map10q12NCBI
Hmmr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540816,865,175 - 16,898,328 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540816,865,066 - 16,895,918 (+)NCBIChiLan1.0ChiLan1.0
HMMR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24158,633,386 - 158,665,136 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15156,772,932 - 156,804,681 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05158,837,511 - 158,868,800 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15165,614,127 - 165,645,478 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5165,614,127 - 165,645,478 (+)Ensemblpanpan1.1panPan2
HMMR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1447,743,576 - 47,786,982 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl447,744,433 - 47,786,987 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha447,636,932 - 47,680,143 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0448,174,453 - 48,217,932 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl448,173,528 - 48,218,336 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1447,957,849 - 48,001,109 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0448,116,318 - 48,159,393 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0448,635,989 - 48,679,214 (-)NCBIUU_Cfam_GSD_1.0
Hmmr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213102,120,763 - 102,150,196 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936515571,139 - 600,132 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936515570,112 - 599,400 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HMMR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1660,290,001 - 60,331,936 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11660,290,684 - 60,332,411 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21665,130,340 - 65,172,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103244927
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12365,732,343 - 65,765,511 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2365,732,553 - 65,765,511 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236665734,011 - 37,804 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hmmr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473326,319,678 - 26,351,234 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473326,319,635 - 26,351,576 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hmmr
955 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:632
Count of miRNA genes:467
Interacting mature miRNAs:515
Transcripts:ENSMUST00000020579, ENSMUST00000127705, ENSMUST00000152749, ENSMUST00000156399
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
4141398Tgq22_mtriglyceride QTL 22 (mouse)Not determined2116340655163406Mouse
10412246Dfs2_mdental fluorosis suseptibility 2 (mouse)Not determined112180736495881231Mouse
10044006Hbnr13_mHeligmosomoides bakeri nematode resistance 13 (mouse)Not determined112577262659772741Mouse
1301814Bbaa7_mB.burgdorferi-associated arthritis 7 (mouse)Not determined112601178044264695Mouse
12910801Pwbwq14_mpost-weaning body weight QTL 14 (mouse)112719805750636094Mouse
12910804Pwbwq16_mpost-weaning body weight QTL 16 (mouse)112719805750636094Mouse
12910806Pwbwq15_mpost-weaning body weight QTL 15 (mouse)112719805750636094Mouse
12910817Pwgrq20_mpost-weaning growth rate QTL 20 (mouse)112719805750636094Mouse
12910818Ogrq5_moverall growth rate QTL 5 (mouse)112719805750636094Mouse
1357844Si5lq5_mserum IGFBP-5 level QTL 5 (mouse)Not determined112816587362165976Mouse
13524848Ppiq7_mprepulse inhibition QTL 7 (mouse)112856914762569147Mouse
1301426Desp2_mdespair 2 (mouse)Not determined112870858162708700Mouse
11522752Cocia18_mcocaine-induced activity, QTL 18 (mouse)113100820965008209Mouse
11059563Lmr31_mleishmaniasis resistance 31 (mouse)113210057766100694Mouse
10043922Alcw9_malcohol withdrawal 9 (mouse)Not determined113557861644065931Mouse
1301718Pbw3_mpentobarbital withdrawal QTL 3 (mouse)Not determined113557861644065931Mouse
1558769Zolw1_mzolpidem withdrawal 1 (mouse)Not determined113557861644065931Mouse
1357782Char8_mP. chabaudi malaria resistance QTL 8 (mouse)Not determined113557861669684987Mouse
13208569Bmiq10_mbody mass index QTL 10 (mouse)113589082784890826Mouse
1301328Mol4_mmodifier of LPS-response 4 (mouse)Not determined113628257783481356Mouse
1301788Lbw8_mlupus NZB x NZW 8 (mouse)Not determined113650328770509492Mouse
1301896Tria1_mT-cell receptor induced activation 1 (mouse)Not determined113661356570613855Mouse
4141853Skmw17_mskeletal muscle weight 17 (mouse)Not determined113708094171081064Mouse
4142475Ity2a_mimmunity to S. typhimurium 2a (mouse)Not determined113776858060402716Mouse
10766457Nwa3_mNew Zealand White autoimmunity 3 (mouse)113801611572016209Mouse
10053675Eae44b_mexperimental allergic encephalomyelitis susceptibility 44b (mouse)Not determined113995072854094448Mouse

Markers in Region
18.MMHAP76FRF9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381140,731,894 - 40,732,044UniSTSGRCm38
MGSCv371140,545,396 - 40,545,546UniSTSGRCm37
Celera1144,583,948 - 44,584,098UniSTS
Cytogenetic Map11A5UniSTS
cM Map1119.0UniSTS
cM Map1123.0UniSTS
Whitehead_YAC11 UniSTS
UniSTS:236554  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381140,715,205 - 40,715,540UniSTSGRCm38
MGSCv371140,528,707 - 40,529,042UniSTSGRCm37
Celera1144,565,099 - 44,565,434UniSTS
Cytogenetic Map11A5UniSTS
cM Map1119.0UniSTS
Hmmr  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map11A5UniSTS
cM Map1119.0UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006532279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036156344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF031932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF079222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ005924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ006031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK143123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL646055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC021427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466609 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CN455388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X64550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000020579   ⟹   ENSMUSP00000020579
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,592,222 - 40,624,249 (-)Ensembl
GRCm38.p6 Ensembl1140,701,395 - 40,733,422 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127705
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,613,664 - 40,624,243 (-)Ensembl
GRCm38.p6 Ensembl1140,722,837 - 40,733,416 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152749
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,615,458 - 40,624,218 (-)Ensembl
GRCm38.p6 Ensembl1140,724,631 - 40,733,391 (-)Ensembl
RefSeq Acc Id: ENSMUST00000156399
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1140,611,730 - 40,624,243 (-)Ensembl
GRCm38.p6 Ensembl1140,720,903 - 40,733,416 (-)Ensembl
RefSeq Acc Id: NM_013552   ⟹   NP_038580
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,592,215 - 40,624,264 (-)NCBI
GRCm381140,701,388 - 40,733,437 (-)NCBI
MGSCv371140,514,890 - 40,546,939 (-)RGD
Celera1144,551,316 - 44,585,491 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006532276   ⟹   XP_006532339
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,592,222 - 40,624,272 (-)NCBI
GRCm381140,701,415 - 40,733,464 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532278   ⟹   XP_006532341
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,592,222 - 40,624,279 (-)NCBI
GRCm381140,701,415 - 40,733,395 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006532279   ⟹   XP_006532342
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,592,222 - 40,624,280 (-)NCBI
GRCm381140,701,415 - 40,733,395 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036156344   ⟹   XP_036012237
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391140,592,222 - 40,624,290 (-)NCBI
Sequence:
RefSeq Acc Id: NP_038580   ⟸   NM_013552
- UniProtKB: Q5NC88 (UniProtKB/Swiss-Prot),   Q00547 (UniProtKB/Swiss-Prot),   Q8VDR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532339   ⟸   XM_006532276
- Peptide Label: isoform X2
- UniProtKB: Q8VDR2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006532342   ⟸   XM_006532279
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006532341   ⟸   XM_006532278
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000020579   ⟸   ENSMUST00000020579
RefSeq Acc Id: XP_036012237   ⟸   XM_036156344
- Peptide Label: isoform X1
- UniProtKB: Q8VDR2 (UniProtKB/TrEMBL)
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q00547-F1-model_v2 AlphaFold Q00547 1-794 view protein structure

Promoters
RGD ID:6821500
Promoter ID:MM_KWN:6990
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000109302,   ENSMUST00000109303,   NM_013552,   NM_026023,   OTTMUST00000012110,   OTTMUST00000012112,   OTTMUST00000012113,   OTTMUST00000012115,   OTTMUST00000012118,   UC007ILU.1,   UC007ILV.1,   UC007ILW.1,   UC007ILX.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361140,546,796 - 40,548,202 (+)MPROMDB
RGD ID:8674312
Promoter ID:EPDNEW_M15186
Type:initiation region
Name:Hmmr_1
Description:Mus musculus hyaluronan mediated motility receptor , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381140,733,408 - 40,733,468EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104667 AgrOrtholog
Ensembl Genes ENSMUSG00000020330 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000020579 ENTREZGENE
  ENSMUST00000020579.9 UniProtKB/Swiss-Prot
Gene3D-CATH Methyl-accepting chemotaxis protein UniProtKB/TrEMBL
InterPro HMMR_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IHABP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:15366 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:104667 ENTREZGENE
NCBI Gene 15366 ENTREZGENE
PANTHER HYALURONAN MEDIATED MOTILITY RECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18956 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam HMMR_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HMMR_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Hmmr PhenoGen
Superfamily-SCOP Myosin rod fragments UniProtKB/TrEMBL
UniProt HMMR_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TP93_MOUSE UniProtKB/TrEMBL
  Q3TPG1_MOUSE UniProtKB/TrEMBL
  Q3UPW7_MOUSE UniProtKB/TrEMBL
  Q5NC88 ENTREZGENE
  Q8VDR2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary Q5NC88 UniProtKB/Swiss-Prot