Grin1 (glutamate receptor, ionotropic, NMDA1 (zeta 1)) - Rat Genome Database
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Gene: Grin1 (glutamate receptor, ionotropic, NMDA1 (zeta 1)) Mus musculus
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Symbol: Grin1
Name: glutamate receptor, ionotropic, NMDA1 (zeta 1)
RGD ID: 10685
MGI Page MGI
Description: Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; sensory organ; and skeleton. Used to study autism spectrum disorder and schizophrenia. Human ortholog(s) of this gene implicated in alcohol use disorder; autosomal dominant non-syndromic intellectual disability 8; and cerebral infarction. Orthologous to human GRIN1 (glutamate ionotropic receptor NMDA type subunit 1); PARTICIPATES IN alfentanil pharmacodynamics pathway; bupivacaine pharmacodynamics pathway; buprenorphine pharmacodynamics pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine; 17beta-estradiol.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: GluN1; GluRdelta1; GluRze; GluRzeta1; glutamate [NMDA] receptor subunit zeta-1; glutamate receptor ionotropic, NMDA 1; M100174; N; N-methyl-D-aspartate receptor subunit NR1; Nm; NMD; NMD-R1; Nmdar; NMDAR1; NR1; Rgsc1; Rgsc174
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,181,189 - 25,209,199 (-)NCBIGRCm39mm39
GRCm39 Ensembl225,181,193 - 25,209,199 (-)Ensembl
GRCm38225,291,177 - 25,319,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,291,181 - 25,319,187 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,146,697 - 25,174,683 (-)NCBIGRCm37mm9NCBIm37
MGSCv36225,114,256 - 25,140,988 (-)NCBImm8
Celera225,018,687 - 25,046,664 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(25R)-cholest-5-ene-3beta,26-diol  (ISO)
(R)-lipoic acid  (ISO)
(S)-3,5-dihydroxyphenylglycine  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (EXP)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP,ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dinitrotoluene  (ISO)
2-methyl-6-(phenylethynyl)pyridine  (ISO)
2-methylcholine  (ISO)
26-hydroxycholesterol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
4-[1-hydroxy-2-[4-(phenylmethyl)-1-piperidinyl]propyl]phenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aflatoxin B2  (ISO)
agmatine  (ISO)
aldehydo-D-glucose  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
androgen antagonist  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (EXP)
astaxanthin  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Butylparaben  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (EXP,ISO)
capsaicin  (ISO)
celecoxib  (EXP)
chlorpyrifos  (ISO)
choline  (EXP,ISO)
clozapine  (EXP,ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (EXP,ISO)
copper(0)  (EXP,ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
D-glucose  (EXP)
DDE  (ISO)
decabromodiphenyl ether  (EXP,ISO)
dexamethasone  (ISO)
dextromethorphan  (ISO)
diarsenic trioxide  (EXP)
diazinon  (EXP)
dibutyl phthalate  (ISO)
dieldrin  (EXP,ISO)
dopamine  (ISO)
enzacamene  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP,ISO)
excitatory amino acid agonist  (EXP,ISO)
felbamate  (ISO)
fenvalerate  (ISO)
folic acid  (EXP,ISO)
fulvestrant  (ISO)
gamma-tocopherol  (EXP)
genistein  (ISO)
gentamycin  (ISO)
glucose  (EXP)
glyphosate  (EXP)
haloperidol  (ISO)
herbicide  (EXP)
homocysteine  (ISO)
kainic acid  (EXP,ISO)
ketamine  (ISO)
KT 5720  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lead(II) chloride  (ISO)
linuron  (ISO)
lipoic acid  (ISO)
lipoteichoic acid  (EXP)
lithium chloride  (EXP)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
melamine  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
monosodium L-glutamate  (ISO)
morphine  (EXP,ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
nobiletin  (ISO)
Nonylphenol  (ISO)
notoginsenoside R1  (ISO)
ochratoxin A  (ISO)
oxidopamine  (ISO)
oxybenzone  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
PCB138  (ISO)
pentobarbital  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phencyclidine  (EXP)
phenytoin  (ISO)
picloram  (EXP)
prochloraz  (ISO)
procymidone  (ISO)
resveratrol  (EXP,ISO)
semicarbazide  (ISO)
SKF 38393  (ISO)
sodium arsenite  (EXP,ISO)
streptozocin  (ISO)
sulfur dioxide  (ISO)
sulindac  (ISO)
thimerosal  (EXP)
titanium dioxide  (EXP)
tocopherol  (EXP)
toluene  (EXP)
tributylstannane  (ISO)
trichlopyr  (EXP)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (ISO)
WIN 55212-2  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
adult locomotory behavior  (IMP)
associative learning  (IMP)
calcium ion homeostasis  (IDA)
calcium ion transmembrane import into cytosol  (ISO)
calcium ion transport  (IDA,IMP)
cation transport  (IGI,ISO)
cellular calcium ion homeostasis  (IMP)
cellular response to amyloid-beta  (ISO)
cellular response to manganese ion  (ISO)
cerebral cortex development  (IMP)
chemical synaptic transmission  (IBA,TAS)
conditioned taste aversion  (IMP)
excitatory postsynaptic potential  (IGI,IMP)
ion transport  (IEA)
ionotropic glutamate receptor signaling pathway  (IBA,IDA,ISO)
learning  (IMP)
learning or memory  (IMP)
long-term memory  (IMP)
male mating behavior  (IMP)
memory  (IMP)
negative regulation of neuron apoptotic process  (IGI,IMP)
neuromuscular process  (IMP)
olfactory learning  (IMP)
pons maturation  (IMP)
positive regulation of apoptotic process  (IGI)
positive regulation of calcium ion transport into cytosol  (ISO)
positive regulation of cell death  (ISO)
positive regulation of cysteine-type endopeptidase activity  (ISO)
positive regulation of dendritic spine maintenance  (ISO)
positive regulation of excitatory postsynaptic potential  (ISO)
positive regulation of reactive oxygen species biosynthetic process  (ISO)
positive regulation of Schwann cell migration  (ISO)
positive regulation of transcription by RNA polymerase II  (IDA)
prepulse inhibition  (IMP)
propylene metabolic process  (IDA)
protein heterotetramerization  (ISO)
protein localization to postsynaptic membrane  (IMP)
protein-containing complex assembly  (ISO)
regulation of axonogenesis  (IMP)
regulation of cell communication  (IMP)
regulation of dendrite morphogenesis  (IMP)
regulation of long-term neuronal synaptic plasticity  (IMP)
regulation of membrane potential  (IBA,IDA,IMP,ISO)
regulation of neuron apoptotic process  (IGI,IMP)
regulation of neuronal synaptic plasticity  (IMP)
regulation of respiratory gaseous exchange  (IMP)
regulation of synapse assembly  (IMP)
regulation of synaptic plasticity  (IMP)
response to amine  (ISO)
response to amphetamine  (IGI,IMP)
response to calcium ion  (ISO)
response to ethanol  (ISO)
response to fungicide  (ISO)
response to glycine  (ISO)
response to morphine  (IMP)
response to organic cyclic compound  (ISO)
rhythmic process  (ISO)
sensory perception of pain  (IMP)
social behavior  (IMP)
startle response  (IMP)
suckling behavior  (IMP)
synaptic transmission, glutamatergic  (IMP)
visual learning  (IGI,IMP)

Molecular Pathway Annotations     Click to see Annotation Detail View
alfentanil pharmacodynamics pathway  (ISO)
Alzheimer's disease pathway  (IEA)
amyotrophic lateral sclerosis pathway  (IEA)
bupivacaine pharmacodynamics pathway  (ISO)
buprenorphine pharmacodynamics pathway  (ISO)
calcium/calmodulin dependent kinase 2 signaling pathway  (ISO)
chloroprocaine pharmacodynamics pathway  (ISO)
citalopram pharmacodynamics pathway  (ISO)
cocaine pharmacodynamics pathway  (ISO)
codeine and morphine pharmacodynamics pathway  (ISO)
desipramine pharmacodynamics pathway  (ISO)
diphenoxylate pharmacodynamics pathway  (ISO)
escitalopram pharmacodynamics pathway  (ISO)
ethylmorphine pharmacodynamics pathway  (ISO)
excitatory synaptic transmission pathway  (ISO)
fentanyl pharmacodynamics pathway  (ISO)
fluoxetine pharmacodynamics pathway  (ISO)
glutamate signaling pathway  (IEA)
heroin pharmacodynamics pathway  (ISO)
Huntington's disease pathway  (IEA)
hydrocodone pharmacodynamics pathway  (ISO)
hydromorphone pharmacodynamics pathway  (ISO)
imipramine pharmacodynamics pathway  (ISO)
levacetylmethadol pharmacodynamics pathway  (ISO)
levobupivacaine phgarmacodynamics pathway  (ISO)
levorphanol pharmacodynamics pathway  (ISO)
lidocaine pharmacodynamics pathway  (ISO)
long term potentiation  (IEA)
mepivacaine pharmacodynamics pathway  (ISO)
methadone pharmacodynamics pathway  (ISO)
methadone pharmacokinetics pathway  (ISO)
nalbuphine pharmacodynamics pathway  (ISO)
naloxone pharmacodynamics pathway  (ISO)
naltrexone pharmacodynamics pathway  (ISO)
nicotine pharmacodynamics pathway  (ISO)
oxybuprocaine pharmacodynamics pathway  (ISO)
oxycodone pharmacodynamics pathway  (ISO)
oxymorphone pharmacodynamics pathway  (ISO)
pentazocine pharmacodynamics pathway  (ISO)
prilocaine pharmacodynamics pathway  (ISO)
procaine pharmacodynamics pathway  (ISO)
remifentanil pharmacodynamics pathway  (ISO)
ropivacaine pharmacodynamics pathway  (ISO)
tramadol pharmacodynamics pathway  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal AMPA-mediated synaptic currents  (IAGP)
abnormal anxiety-related response  (IAGP)
abnormal auditory brainstem response  (IAGP)
abnormal behavioral response to addictive substance  (IAGP)
abnormal behavioral response to alcohol  (IAGP)
abnormal behavioral response to xenobiotic  (IAGP)
abnormal brain wave pattern  (IAGP)
abnormal brainstem morphology  (IAGP)
abnormal breathing pattern  (IAGP)
abnormal conditioned taste aversion behavior  (IAGP)
abnormal contextual conditioning behavior  (IAGP)
abnormal discrimination learning  (IAGP)
abnormal eating behavior  (IAGP)
abnormal excitatory postsynaptic currents  (IAGP)
abnormal food intake  (IAGP)
abnormal glutamate-mediated receptor currents  (IAGP)
abnormal hearing electrophysiology  (IAGP)
abnormal huddling behavior  (IAGP)
abnormal innervation  (IAGP)
abnormal learning/memory/conditioning  (IAGP)
abnormal liquid preference  (IAGP)
abnormal locomotor behavior  (IAGP)
abnormal long term potentiation  (IAGP)
abnormal maternal grooming  (IAGP)
abnormal maternal nurturing  (IAGP)
abnormal medium spiny neuron morphology  (IAGP)
abnormal miniature excitatory postsynaptic currents  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal motor learning  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal nervous system physiology  (IAGP)
abnormal nest building behavior  (IAGP)
abnormal neuron physiology  (IAGP)
abnormal NMDA-mediated synaptic currents  (IAGP)
abnormal object recognition memory  (IAGP)
abnormal olfactory discrimination memory  (IAGP)
abnormal physiological response to xenobiotic  (IAGP)
abnormal postnatal growth  (IAGP)
abnormal postnatal growth/weight/body size  (IAGP)
abnormal postural reflex  (IAGP)
abnormal primary somatosensory cortex morphology  (IAGP)
abnormal pulmonary respiratory rate  (IAGP)
abnormal pup retrieval  (IAGP)
abnormal respiration  (IAGP)
abnormal sexual interaction  (IAGP)
abnormal single cell response  (IAGP)
abnormal social investigation  (IAGP)
abnormal social/conspecific interaction  (IAGP)
abnormal somatosensory cortex morphology  (IAGP)
abnormal spatial learning  (IAGP)
abnormal spatial working memory  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal trigeminal nerve morphology  (IAGP)
absence of NMDA-mediated synaptic currents  (IAGP)
absent barrels in primary somatosensory cortex  (IAGP)
absent gastric milk in neonates  (IAGP)
absent long term depression  (IAGP)
absent suckling reflex  (IAGP)
aphagia  (IAGP)
apnea  (IAGP)
ataxia  (IAGP)
atelectasis  (IAGP)
cyanosis  (IAGP)
decreased aggression towards mice  (IAGP)
decreased alcohol consumption  (IAGP)
decreased body weight  (IAGP)
decreased excitatory postsynaptic current amplitude  (IAGP)
decreased prepulse inhibition  (IAGP)
decreased susceptibility to neuronal excitotoxicity  (IAGP)
decreased susceptibility to pharmacologically induced seizures  (IAGP)
decreased vertical activity  (IAGP)
decreased vocalization  (IAGP)
hyperactivity  (IAGP)
hypoactivity  (IAGP)
impaired behavioral response to cocaine  (IAGP)
impaired conditioned place preference behavior  (IAGP)
impaired coordination  (IAGP)
impaired passive avoidance behavior  (IEA)
impaired righting response  (IAGP)
impaired social transmission of food preference  (IAGP)
impaired synaptic plasticity  (IAGP)
increased alcohol consumption  (IAGP)
increased anxiety-related response  (IAGP)
increased exploration in new environment  (IAGP)
increased grooming behavior  (IAGP)
increased startle reflex  (IAGP)
increased susceptibility to pharmacologically induced seizures  (IAGP)
increased thigmotaxis  (IAGP)
limb grasping  (IAGP)
lung hemorrhage  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
overexpanded pulmonary alveoli  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
pup cannibalization  (IAGP)
reduced AMPA-mediated synaptic currents  (IAGP)
reduced long term potentiation  (IAGP)
reduced male fertility  (IAGP)
reduced male mating frequency  (IAGP)
reduced NMDA receptor mediated synaptic activity in barrel cortex  (IAGP)
reduced NMDA-mediated synaptic currents  (IAGP)
respiratory distress  (IAGP)
social withdrawal  (IAGP)
stereotypic behavior  (IAGP)
thrombocytopenia  (IEA)
tonic-clonic seizures  (IAGP)
References

References - curated
1. Coultrap SJ and Bayer KU, Trends Neurosci. 2012 Oct;35(10):607-18. doi: 10.1016/j.tins.2012.05.003. Epub 2012 Jun 19.
2. Dos-Anjos S, etal., Neuroscience. 2009 Dec 15;164(3):1119-26. Epub 2009 Sep 15.
3. Ishihama K, etal., Arch Histol Cytol. 2005 Dec;68(4):321-35.
4. Jiang X, etal., Neurobiol Aging. 2015 Feb;36(2):867-76. doi: 10.1016/j.neurobiolaging.2014.10.018. Epub 2014 Oct 16.
5. Kalev-Zylinska ML, etal., Stroke. 2013 Aug;44(8):2212-9. doi: 10.1161/STROKEAHA.113.001235. Epub 2013 May 30.
6. Leuba G, etal., Curr Alzheimer Res. 2014 Jan;11(1):86-96.
7. Mehta SL, etal., J Neurosci. 2015 Dec 16;35(50):16443-9. doi: 10.1523/JNEUROSCI.2943-15.2015.
8. MGD and Homologene mouse data transfer
9. MGD data from the GO Consortium
10. MGD IEA
11. Mohamed NE, etal., J Alzheimers Dis. 2015;44(2):431-7. doi: 10.3233/JAD-141764.
12. OMIM Disease Annotation Pipeline
13. Pipeline to import KEGG annotations from KEGG into RGD
14. Pipeline to import SMPDB annotations from SMPDB into RGD
15. RGD automated import pipeline
16. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. RGD automated import pipeline for gene-chemical interactions
18. Schober ME, etal., Am J Physiol Regul Integr Comp Physiol. 2009 Mar;296(3):R681-92. Epub 2009 Jan 14.
19. Wei B, etal., Brain Res. 2016 Jan 15;1631:157-64. doi: 10.1016/j.brainres.2015.11.041. Epub 2015 Dec 2.
20. Wernicke C, etal., Biol Psychiatry. 2003 Nov 1;54(9):922-8.
Additional References at PubMed
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PMID:7907365   PMID:7929101   PMID:7929904   PMID:8015722   PMID:8036251   PMID:8050674   PMID:8060614   PMID:8267632   PMID:8313466   PMID:8406459   PMID:8464923   PMID:8595214  
PMID:8601798   PMID:8713451   PMID:8756432   PMID:8786137   PMID:8787861   PMID:8795639   PMID:8840015   PMID:8889548   PMID:8965641   PMID:8980238   PMID:8980239   PMID:8996814  
PMID:9003035   PMID:9004271   PMID:9011744   PMID:9054942   PMID:9061862   PMID:9147327   PMID:9246451   PMID:9252405   PMID:9310432   PMID:9381182   PMID:9427244   PMID:9458051  
PMID:9647694   PMID:9892651   PMID:10331083   PMID:10349636   PMID:10479699   PMID:10480904   PMID:10481908   PMID:10531433   PMID:10561449   PMID:10592285   PMID:10700255   PMID:10719900  
PMID:10729336   PMID:10777815   PMID:10818139   PMID:10846156   PMID:10862698   PMID:10963597   PMID:11042159   PMID:11073458   PMID:11076861   PMID:11146102   PMID:11180955   PMID:11217851  
PMID:11248114   PMID:11297529   PMID:11344110   PMID:11754835   PMID:11754836   PMID:11834301   PMID:12008020   PMID:12040087   PMID:12103442   PMID:12151550   PMID:12191494   PMID:12414093  
PMID:12417641   PMID:12454527   PMID:12466851   PMID:12467588   PMID:12477932   PMID:12498788   PMID:12586454   PMID:12588844   PMID:12657691   PMID:12676993   PMID:12718863   PMID:12805289  
PMID:12818182   PMID:12832526   PMID:12843287   PMID:12844507   PMID:12853299   PMID:12887696   PMID:12890763   PMID:12935910   PMID:12935911   PMID:12957649   PMID:14507892   PMID:14512023  
PMID:14602821   PMID:14610273   PMID:14645471   PMID:14681479   PMID:14970236   PMID:15003177   PMID:15051165   PMID:15066262   PMID:15265649   PMID:15317856   PMID:15328026   PMID:15448144  
PMID:15467708   PMID:15489334   PMID:15496680   PMID:15564573   PMID:15576450   PMID:15581614   PMID:15584924   PMID:15663482   PMID:15681343   PMID:15716419   PMID:15745956   PMID:15748150  
PMID:15776442   PMID:15803506   PMID:15809437   PMID:15813953   PMID:15857677   PMID:15880743   PMID:15935055   PMID:15978582   PMID:16025111   PMID:16045500   PMID:16099814   PMID:16101757  
PMID:16141072   PMID:16141073   PMID:16299502   PMID:16332682   PMID:16376302   PMID:16436592   PMID:16438943   PMID:16554481   PMID:16601687   PMID:16602821   PMID:16611824   PMID:16635246  
PMID:16638606   PMID:16679559   PMID:16698234   PMID:16706842   PMID:16710293   PMID:16814779   PMID:16880397   PMID:16899073   PMID:16906136   PMID:16987237   PMID:17004940   PMID:17015831  
PMID:17018287   PMID:17077143   PMID:17093100   PMID:17114649   PMID:17116169   PMID:17124502   PMID:17229826   PMID:17234593   PMID:17292799   PMID:17313573   PMID:17438141   PMID:17556551  
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PMID:19406112   PMID:19427735   PMID:19446010   PMID:19452450   PMID:19455133   PMID:19524116   PMID:19563516   PMID:19597494   PMID:19607886   PMID:19608740   PMID:19640847   PMID:19650121  
PMID:19666602   PMID:19726645   PMID:19735292   PMID:19751394   PMID:19776282   PMID:19794189   PMID:19840778   PMID:19915563   PMID:20008465   PMID:20062537   PMID:20097831   PMID:20152111  
PMID:20159452   PMID:20170426   PMID:20345915   PMID:20348416   PMID:20427654   PMID:20519520   PMID:20543469   PMID:20574709   PMID:20577261   PMID:20616081   PMID:20634195   PMID:20651684  
PMID:20808436   PMID:20824214   PMID:20861386   PMID:20923697   PMID:20927585   PMID:20974228   PMID:20980546   PMID:21040854   PMID:21106831   PMID:21108993   PMID:21162241   PMID:21190219  
PMID:21190942   PMID:21267068   PMID:21368124   PMID:21436042   PMID:21443909   PMID:21468034   PMID:21499253   PMID:21508214   PMID:21559402   PMID:21589880   PMID:21597037   PMID:21677750  
PMID:21734292   PMID:21795692   PMID:21813695   PMID:21873635   PMID:21880926   PMID:21935408   PMID:21943605   PMID:21944720   PMID:21945132   PMID:21995826   PMID:22034973   PMID:22072671  
PMID:22132236   PMID:22196339   PMID:22217152   PMID:22238099   PMID:22241839   PMID:22300668   PMID:22325203   PMID:22360858   PMID:22383529   PMID:22388818   PMID:22419158   PMID:22483791  
PMID:22521963   PMID:22536423   PMID:22539836   PMID:22565825   PMID:22571986   PMID:22606296   PMID:22723691   PMID:22726567   PMID:22797694   PMID:22832274   PMID:22933778   PMID:22947307  
PMID:22952988   PMID:22956849   PMID:22972996   PMID:22973021   PMID:23103165   PMID:23150561   PMID:23277569   PMID:23324492   PMID:23345061   PMID:23348010   PMID:23395379   PMID:23396086  
PMID:23441094   PMID:23485152   PMID:23612301   PMID:23613827   PMID:23664612   PMID:23688147   PMID:23760271   PMID:23871830   PMID:23874151   PMID:23946399   PMID:23978820   PMID:24069373  
PMID:24093505   PMID:24094580   PMID:24096375   PMID:24101472   PMID:24133278   PMID:24179155   PMID:24211371   PMID:24231734   PMID:24244696   PMID:24262147   PMID:24268779   PMID:24298151  
PMID:24302990   PMID:24315834   PMID:24327561   PMID:24360204   PMID:24454710   PMID:24462101   PMID:24464039   PMID:24553945   PMID:24658276   PMID:24685175   PMID:24734203   PMID:24739903  
PMID:24754704   PMID:24912493   PMID:24952961   PMID:25040071   PMID:25104560   PMID:25122900   PMID:25140704   PMID:25144876   PMID:25156700   PMID:25186746   PMID:25196998   PMID:25277456  
PMID:25327402   PMID:25340785   PMID:25429128   PMID:25434216   PMID:25446363   PMID:25450957   PMID:25452020   PMID:25461194   PMID:25467136   PMID:25467984   PMID:25471585   PMID:25490055  
PMID:25615540   PMID:25659756   PMID:25664912   PMID:25762148   PMID:25774850   PMID:25786918   PMID:25800971   PMID:25934101   PMID:25947151   PMID:25979088   PMID:26263173   PMID:26402461  
PMID:26417950   PMID:26457553   PMID:26464985   PMID:26473971   PMID:26490687   PMID:26577758   PMID:26589795   PMID:26609150   PMID:26748053   PMID:26774161   PMID:26777707   PMID:26793056  
PMID:26880306   PMID:26943618   PMID:26969129   PMID:27012890   PMID:27052175   PMID:27070406   PMID:27080392   PMID:27118849   PMID:27144523   PMID:27147651   PMID:27225229   PMID:27292539  
PMID:27294197   PMID:27338016   PMID:27399842   PMID:27480238   PMID:27506655   PMID:27507650   PMID:27575297   PMID:27601184   PMID:27707798   PMID:27800545   PMID:27809304   PMID:27853270  
PMID:27965425   PMID:28069946   PMID:28194005   PMID:28240305   PMID:28244984   PMID:28270746   PMID:28283559   PMID:28285820   PMID:28314819   PMID:28383797   PMID:28410269   PMID:28455101  
PMID:28598330   PMID:28634551   PMID:28671696   PMID:28706196   PMID:28751664   PMID:28821923   PMID:28910619   PMID:28981898   PMID:29024668   PMID:29062097   PMID:29140248   PMID:29150978  
PMID:29163060   PMID:29176858   PMID:29222517   PMID:29230055   PMID:29346754   PMID:29350251   PMID:29355673   PMID:29355693   PMID:29394409   PMID:29444988   PMID:29488136   PMID:29490264  
PMID:29593052   PMID:29847798   PMID:29879109   PMID:29937280   PMID:29958111   PMID:30037790   PMID:30056832   PMID:30057205   PMID:30104731   PMID:30154699   PMID:30284099   PMID:30295606  
PMID:30302389   PMID:30344042   PMID:30352064   PMID:30352630   PMID:30382582   PMID:30466882   PMID:30504838   PMID:30562941   PMID:30687034   PMID:30710214   PMID:30826183   PMID:30992372  
PMID:30995482   PMID:31235685   PMID:31299220   PMID:31340159   PMID:31391209   PMID:31392351   PMID:31413075   PMID:31541561   PMID:31570583   PMID:31600191   PMID:31601771   PMID:31665922  
PMID:31712124   PMID:31721416   PMID:31732832   PMID:31832634   PMID:31841517   PMID:31875540   PMID:32027825   PMID:32077851   PMID:32205341   PMID:32259476   PMID:32269108   PMID:32532981  
PMID:32579270   PMID:32726633   PMID:32939091  


Genomics

Comparative Map Data
Grin1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,181,189 - 25,209,199 (-)NCBIGRCm39mm39
GRCm39 Ensembl225,181,193 - 25,209,199 (-)Ensembl
GRCm38225,291,177 - 25,319,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,291,181 - 25,319,187 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,146,697 - 25,174,683 (-)NCBIGRCm37mm9NCBIm37
MGSCv36225,114,256 - 25,140,988 (-)NCBImm8
Celera225,018,687 - 25,046,664 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.14NCBI
GRIN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl9137,139,154 - 137,168,756 (+)EnsemblGRCh38hg38GRCh38
GRCh389137,139,092 - 137,168,759 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh379140,033,606 - 140,063,208 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,153,430 - 139,183,029 (+)NCBINCBI36hg18NCBI36
Build 349137,308,678 - 137,339,043NCBI
Celera9110,548,072 - 110,577,040 (+)NCBI
Cytogenetic Map9q34.3NCBI
HuRef9109,493,914 - 109,523,231 (+)NCBIHuRef
CHM1_19140,182,355 - 140,211,903 (+)NCBICHM1_1
Grin1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.238,103,680 - 8,130,603 (-)NCBI
Rnor_6.0 Ensembl32,506,896 - 2,534,663 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.032,507,745 - 2,534,664 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.032,489,158 - 2,516,082 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,453,784 - 3,480,381 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.133,453,783 - 3,480,381 (-)NCBI
Celera32,930,222 - 2,957,142 (-)NCBICelera
Cytogenetic Map3p13NCBI
Grin1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,154,864 - 5,178,636 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,154,864 - 5,178,636 (+)NCBIChiLan1.0ChiLan1.0
GRIN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.19137,168,543 - 137,198,297 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,168,722 - 137,197,382 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v09108,198,350 - 108,228,887 (+)NCBIMhudiblu_PPA_v0panPan3
GRIN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl948,493,287 - 48,509,050 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1948,492,967 - 48,513,981 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Grin1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_004936669814,330 - 838,881 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GRIN1
(Sus scrofa - pig)
No map positions available.
GRIN1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1121,020,556 - 1,050,568 (-)NCBI
ChlSab1.1 Ensembl121,019,263 - 1,050,231 (-)Ensembl
Grin1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624760777,208 - 800,525 (-)NCBI

Position Markers
Grin1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
cM Map212.0UniSTS
cM Map212.0UniSTS
UniSTS:234346  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,290,882 - 25,291,104UniSTSGRCm38
MGSCv37225,146,402 - 25,146,624UniSTSGRCm37
Celera225,018,392 - 25,018,614UniSTS
Cytogenetic Map2A3UniSTS
cM Map212.0UniSTS
PMC57740P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,296,052 - 25,296,559UniSTSGRCm38
MGSCv37225,151,572 - 25,152,079UniSTSGRCm37
Celera225,023,562 - 25,024,069UniSTS
Cytogenetic Map2A3UniSTS
cM Map212.0UniSTS
D2Bwg0161e  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38225,301,179 - 25,301,329UniSTSGRCm38
MGSCv37225,156,699 - 25,156,849UniSTSGRCm37
Celera225,028,683 - 25,028,833UniSTS
Cytogenetic Map2A3UniSTS
cM Map213.5UniSTS
Grin1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
Grin1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
Grin1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2A3UniSTS
cM Map212.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142333Tgq10_mtriglyceride QTL 10 (mouse)Not determined125319748Mouse
4141836Tgq11_mtriglyceride QTL 11 (mouse)Not determined125319748Mouse
1301838Sluc16_msusceptibility to lung cancer 16 (mouse)Not determined2126524778Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323390328289138Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388608993591306Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2778910341789249Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2834628442346384Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2841803942418228Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2949443443494563Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2949443443494563Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967188027132630Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212472666726109Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21432455548324701Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2123971355239859Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22123971355239859Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22379913357799257Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22470000055000000Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22478910333633160Mouse
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22478910333633160Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:6050
Count of miRNA genes:630
Interacting mature miRNAs:802
Transcripts:ENSMUST00000028335, ENSMUST00000114307, ENSMUST00000114308, ENSMUST00000114310, ENSMUST00000114312, ENSMUST00000114314, ENSMUST00000114317, ENSMUST00000114318, ENSMUST00000127171, ENSMUST00000135426, ENSMUST00000144402, ENSMUST00000153465, ENSMUST00000153551, ENSMUST00000155627
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001177656 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001177657 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001372562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008169 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI844150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AW494928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY616022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD355382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD363997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D10028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000028335   ⟹   ENSMUSP00000028335
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,120 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114307   ⟹   ENSMUSP00000109946
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,120 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114308   ⟹   ENSMUSP00000109947
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,095 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114310   ⟹   ENSMUSP00000109949
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,095 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114312   ⟹   ENSMUSP00000109951
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,187 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114314   ⟹   ENSMUSP00000109953
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,120 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114317   ⟹   ENSMUSP00000109956
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,095 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114318   ⟹   ENSMUSP00000109957
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,181 - 25,319,095 (-)Ensembl
RefSeq Acc Id: ENSMUST00000127171
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,291,357 - 25,303,785 (-)Ensembl
RefSeq Acc Id: ENSMUST00000135426
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,292,058 - 25,296,679 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144402
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,314,401 - 25,319,163 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153465
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,303,481 - 25,305,100 (-)Ensembl
RefSeq Acc Id: ENSMUST00000153551
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,303,584 - 25,305,397 (-)Ensembl
RefSeq Acc Id: ENSMUST00000155627
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl225,310,801 - 25,319,126 (-)Ensembl
RefSeq Acc Id: NM_001177656   ⟹   NP_001171127
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,189 - 25,209,199 (-)NCBI
GRCm38225,291,177 - 25,319,187 (-)NCBI
MGSCv37225,146,697 - 25,174,683 (-)RGD
Celera225,018,687 - 25,046,688 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001177657   ⟹   NP_001171128
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,189 - 25,209,199 (-)NCBI
GRCm38225,291,177 - 25,319,187 (-)NCBI
MGSCv37225,146,697 - 25,174,683 (-)RGD
Celera225,018,687 - 25,046,688 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001372558   ⟹   NP_001359487
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,193 - 25,209,199 (-)NCBI
GRCm38225,291,181 - 25,319,187 (-)NCBI
RefSeq Acc Id: NM_001372559   ⟹   NP_001359488
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,193 - 25,209,199 (-)NCBI
GRCm38225,291,181 - 25,319,187 (-)NCBI
RefSeq Acc Id: NM_001372560   ⟹   NP_001359489
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,193 - 25,209,199 (-)NCBI
GRCm38225,291,181 - 25,319,187 (-)NCBI
RefSeq Acc Id: NM_001372561   ⟹   NP_001359490
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,193 - 25,209,199 (-)NCBI
GRCm38225,291,181 - 25,319,187 (-)NCBI
RefSeq Acc Id: NM_001372562   ⟹   NP_001359491
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,193 - 25,209,199 (-)NCBI
GRCm38225,291,181 - 25,319,187 (-)NCBI
RefSeq Acc Id: NM_008169   ⟹   NP_032195
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39225,181,189 - 25,209,199 (-)NCBI
GRCm38225,291,177 - 25,319,187 (-)NCBI
MGSCv37225,146,697 - 25,174,683 (-)RGD
Celera225,018,687 - 25,046,688 (-)NCBI
cM Map2 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_032195   ⟸   NM_008169
- Peptide Label: isoform 1 precursor
- UniProtKB: P35438 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001171127   ⟸   NM_001177656
- Peptide Label: isoform 2
- UniProtKB: P35438 (UniProtKB/Swiss-Prot),   A2AI16 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001171128   ⟸   NM_001177657
- Peptide Label: isoform 3 precursor
- UniProtKB: P35438 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001359491   ⟸   NM_001372562
- Peptide Label: isoform 8 precursor
RefSeq Acc Id: NP_001359490   ⟸   NM_001372561
- Peptide Label: isoform 7 precursor
RefSeq Acc Id: NP_001359489   ⟸   NM_001372560
- Peptide Label: isoform 6 precursor
RefSeq Acc Id: NP_001359488   ⟸   NM_001372559
- Peptide Label: isoform 5 precursor
RefSeq Acc Id: NP_001359487   ⟸   NM_001372558
- Peptide Label: isoform 4 precursor
RefSeq Acc Id: ENSMUSP00000028335   ⟸   ENSMUST00000028335
RefSeq Acc Id: ENSMUSP00000109947   ⟸   ENSMUST00000114308
RefSeq Acc Id: ENSMUSP00000109946   ⟸   ENSMUST00000114307
RefSeq Acc Id: ENSMUSP00000109953   ⟸   ENSMUST00000114314
RefSeq Acc Id: ENSMUSP00000109951   ⟸   ENSMUST00000114312
RefSeq Acc Id: ENSMUSP00000109949   ⟸   ENSMUST00000114310
RefSeq Acc Id: ENSMUSP00000109956   ⟸   ENSMUST00000114317
RefSeq Acc Id: ENSMUSP00000109957   ⟸   ENSMUST00000114318
Protein Domains
Lig_chan-Glu_bd   PBPe

Promoters
RGD ID:6831545
Promoter ID:MM_KWN:28125
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000028196
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,152,341 - 25,152,841 (-)MPROMDB
RGD ID:6831544
Promoter ID:MM_KWN:28127
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000028195
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,158,791 - 25,159,291 (-)MPROMDB
RGD ID:6831543
Promoter ID:MM_KWN:28128
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   Brain
Transcripts:OTTMUST00000028193,   OTTMUST00000028194
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,160,659 - 25,161,159 (-)MPROMDB
RGD ID:6831542
Promoter ID:MM_KWN:28129
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:ENSMUST00000114307,   ENSMUST00000114312,   OTTMUST00000028184,   OTTMUST00000028185,   OTTMUST00000028186,   OTTMUST00000028187,   OTTMUST00000028188,   OTTMUST00000028189,   OTTMUST00000028190,   OTTMUST00000028192
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36225,174,341 - 25,174,841 (-)MPROMDB
RGD ID:6876580
Promoter ID:EPDNEW_M1741
Type:initiation region
Name:Grin1_1
Description:Mus musculus glutamate receptor, ionotropic, NMDA1 , transcriptvariant 3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38225,319,124 - 25,319,184EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95819 AgrOrtholog
Ensembl Genes ENSMUSG00000026959 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000028335 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109946 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109947 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109949 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109951 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000109953 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109956 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000109957 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028335 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000114307 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000114308 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000114310 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000114312 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000114314 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000114317 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000114318 ENTREZGENE, UniProtKB/TrEMBL
InterPro ANF_lig-bd_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CaM-bd_C0_NMDA_rcpt_NR1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glu/Gly-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iono_rcpt_met UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Iontro_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peripla_BP_I UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14810 UniProtKB/Swiss-Prot
MGD MGI:95819 ENTREZGENE
NCBI Gene 14810 ENTREZGENE
Pfam ANF_receptor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CaM_bdg_C0 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Grin1 PhenoGen
PRINTS NMDARECEPTOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Lig_chan-Glu_bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PBPe UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF53822 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2AI14_MOUSE UniProtKB/TrEMBL
  A2AI16 ENTREZGENE, UniProtKB/TrEMBL
  A2AI17_MOUSE UniProtKB/TrEMBL
  A2AI19_MOUSE UniProtKB/TrEMBL
  A2AI20_MOUSE UniProtKB/TrEMBL
  A2AI21_MOUSE UniProtKB/TrEMBL
  NMDZ1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TZ31_MOUSE UniProtKB/TrEMBL
UniProt Secondary A2AI15 UniProtKB/Swiss-Prot
  A2AI18 UniProtKB/Swiss-Prot
  Q8CFS4 UniProtKB/Swiss-Prot