Gad1 (glutamate decarboxylase 1) - Rat Genome Database

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Gene: Gad1 (glutamate decarboxylase 1) Mus musculus
Analyze
Symbol: Gad1
Name: glutamate decarboxylase 1
RGD ID: 10615
MGI Page MGI
Description: Enables glutamate decarboxylase activity. Involved in gamma-aminobutyric acid biosynthetic process. Acts upstream of or within locomotory exploration behavior and social behavior. Located in several cellular components, including axon terminus; inhibitory synapse; and presynaptic active zone. Is active in GABA-ergic synapse; perinuclear region of cytoplasm; and presynapse. Is expressed in several structures, including alimentary system; central nervous system; genitourinary system; limb bud; and sensory organ. Human ortholog(s) of this gene implicated in several diseases, including alcohol dependence; amphetamine abuse; developmental and epileptic encephalopathy 89; drug psychosis; and heroin dependence. Orthologous to human GAD1 (glutamate decarboxylase 1).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: 67 kDa glutamic acid decarboxylase; EP1; EP10; Gad-; Gad-1; GAD-67; GAD2; GAD25; GAD4; GAD44; GAD6; GAD67; glutamate decarboxylase 67 kDa isoform; GLUTAMATE DECARBOXYLASE, 67 KD ISOFORM (GAD-67) (67 KD GLUTAMIC ACID DECARBOXYLASE); glutamic acid decarboxylase 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gad1-ps  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39270,392,109 - 70,432,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl270,383,416 - 70,432,358 (+)EnsemblGRCm39 Ensembl
GRCm38270,561,303 - 70,602,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl270,553,072 - 70,602,014 (+)EnsemblGRCm38mm10GRCm38
MGSCv37270,400,221 - 70,440,069 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36270,363,052 - 70,402,853 (+)NCBIMGSCv36mm8
Celera272,228,088 - 72,268,083 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map241.63NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
(R)-lipoic acid  (ISO)
(S)-nicotine  (ISO)
1-methyl-1H-imidazole  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2-methyl-6-(phenylethynyl)pyridine  (ISO)
2-METHYLIMIDAZOLE  (EXP)
2-palmitoylglycerol  (ISO)
3-Acetylpyridine  (ISO)
3-mercaptopropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-methylimidazole  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (ISO)
acetic acid  (ISO)
acrylamide  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allylglycine  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
amphetamine  (EXP,ISO)
apocynin  (EXP)
Aroclor 1254  (ISO)
atrazine  (ISO)
Azoxymethane  (EXP)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
chaetocin  (ISO)
chlorpromazine  (EXP)
chlorpyrifos  (EXP,ISO)
cisplatin  (ISO)
clenbuterol  (ISO)
clozapine  (EXP,ISO)
cobalt dichloride  (EXP,ISO)
cocaine  (ISO)
corticosterone  (EXP,ISO)
Cuprizon  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
cypermethrin  (ISO)
cyproconazole  (ISO)
D-glucose  (ISO)
dexamethasone  (ISO)
dextran sulfate  (EXP)
diazepam  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dihydro-beta-erythroidine  (ISO)
diisopropyl fluorophosphate  (ISO)
dimethyl sulfoxide  (ISO)
dioxygen  (EXP,ISO)
disodium selenite  (EXP)
dizocilpine maleate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
eticlopride(1+)  (ISO)
fenamidone  (EXP)
fluoxetine  (ISO)
fluvoxamine  (ISO)
folic acid  (EXP)
fonofos  (ISO)
fulvestrant  (ISO)
furan  (ISO)
furosemide  (ISO)
gamma-aminobutyric acid  (ISO)
genistein  (ISO)
glucose  (ISO)
glyphosate  (ISO)
haloperidol  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
kainic acid  (ISO)
ketamine  (EXP)
ketoconazole  (EXP)
L-glutamic acid  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
lipoic acid  (ISO)
malathion  (ISO)
manganese(II) chloride  (ISO)
metformin  (ISO)
methimazole  (ISO)
methotrexate  (ISO)
methylazoxymethanol  (ISO)
methylmercury chloride  (EXP,ISO)
mifepristone  (ISO)
Mipafox  (ISO)
monosodium L-glutamate  (ISO)
morphine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-ethylmaleimide  (ISO)
nickel sulfate  (ISO)
nicotine  (ISO)
Nonylphenol  (ISO)
O-methyleugenol  (ISO)
okadaic acid  (ISO)
olanzapine  (ISO)
oxidopamine  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
paraoxon  (ISO)
paraquat  (ISO)
parathion  (ISO)
pentanal  (ISO)
pentane-2,3-dione  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenylmercury acetate  (ISO)
picrotoxin  (ISO)
poly(I:C)  (ISO)
propanal  (ISO)
propranolol  (ISO)
pyridoxal 5'-phosphate  (EXP,ISO)
quercetin  (ISO)
raloxifene  (ISO)
reserpine  (ISO)
sarin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
Soman  (ISO)
sotorasib  (ISO)
streptozocin  (ISO)
sulfadimethoxine  (ISO)
sulpiride  (EXP)
tamoxifen  (ISO)
terbufos  (ISO)
testosterone  (ISO)
titanium dioxide  (EXP)
toluene  (ISO)
trametinib  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (EXP)
valproic acid  (EXP,ISO)
vigabatrin  (ISO)
vorinostat  (ISO)
VX nerve agent  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal brain interneuron morphology  (IAGP)
abnormal brain wave pattern  (IAGP)
abnormal excitatory postsynaptic potential  (IAGP)
abnormal gait  (IAGP)
abnormal gustatory system physiology  (IAGP)
abnormal inhibitory postsynaptic currents  (IAGP)
abnormal involuntary movement  (IAGP)
abnormal motor coordination/balance  (IAGP)
abnormal nerve fiber response  (IAGP)
abnormal nervous system electrophysiology  (IAGP)
abnormal nervous system morphology  (IAGP)
abnormal neuronal migration  (IAGP)
abnormal neuronal precursor proliferation  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal visual cortex morphology  (IAGP)
absent gastric milk in neonates  (IAGP)
atelectasis  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
cyanosis  (IAGP)
decreased brain size  (IAGP)
decreased gamma-aminobutyric acid level  (IAGP)
decreased glutamate decarboxylase activity  (IAGP)
decreased grip strength  (IAGP)
dehydration  (IAGP)
distended abdomen  (IAGP)
embryonic growth retardation  (IAGP)
failure of palatal shelf elevation  (IAGP)
hypoxia  (IAGP)
impaired coordination  (IAGP)
increased apoptosis  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
lethality, complete penetrance  (IAGP)
limb grasping  (IAGP)
meteorism  (IAGP)
narrow maxilla  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
omphalocele  (IAGP)
palatal shelves fail to meet at midline  (IAGP)
perinatal lethality  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
preaxial polydactyly  (IAGP)
premature death  (IAGP)
primary atelectasis  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
small olfactory bulb  (IAGP)
thin cerebral cortex  (IAGP)
umbilical hernia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Differential adaptations in GABAergic and glutamatergic systems during ethanol withdrawal in male and female rats. Alele PE and Devaud LL, Alcohol Clin Exp Res. 2005 Jun;29(6):1027-34.
2. Mice lacking the 65 kDa isoform of glutamic acid decarboxylase (GAD65) maintain normal levels of GAD67 and GABA in their brains but are susceptible to seizures. Asada H, etal., Biochem Biophys Res Commun 1996 Dec 24;229(3):891-5.
3. Tracking the expression of excitatory and inhibitory neurotransmission-related proteins and neuroplasticity markers after noise induced hearing loss. Browne CJ, etal., PLoS One. 2012;7(3):e33272. doi: 10.1371/journal.pone.0033272. Epub 2012 Mar 12.
4. Cleft palate in mice with a targeted mutation in the gamma-aminobutyric acid-producing enzyme glutamic acid decarboxylase 67. Condie BG, etal., Proc Natl Acad Sci U S A 1997 Oct 14;94(21):11451-5.
5. Recombinant tissue plasminogen activator induces long-term anxiety-like behaviors via the ERK1/2-GAD1-GABA cascade in the hippocampus of a rat model. Dong MX, etal., Neuropharmacology. 2018 Jan;128:119-131. doi: 10.1016/j.neuropharm.2017.09.039. Epub 2017 Oct 3.
6. Support for involvement of glutamate decarboxylase 1 and neuropeptide y in anxiety susceptibility. Donner J, etal., Am J Med Genet B Neuropsychiatr Genet. 2012 Apr;159B(3):316-27. doi: 10.1002/ajmg.b.32029. Epub 2012 Feb 10.
7. Prefrontal dysfunction in schizophrenia involves mixed-lineage leukemia 1-regulated histone methylation at GABAergic gene promoters. Huang HS, etal., J Neurosci. 2007 Oct 17;27(42):11254-62. doi: 10.1523/JNEUROSCI.3272-07.2007.
8. mir-500-Mediated GAD67 Downregulation Contributes to Neuropathic Pain. Huang ZZ, etal., J Neurosci. 2016 Jun 8;36(23):6321-31. doi: 10.1523/JNEUROSCI.0646-16.2016.
9. No association between the glutamate decarboxylase 67 gene (GAD1) and schizophrenia in the Japanese population. Ikeda M, etal., Schizophr Res. 2007 Mar;91(1-3):22-6. Epub 2007 Feb 14.
10. Repeated morphine treatment alters polysialylated neural cell adhesion molecule, glutamate decarboxylase-67 expression and cell proliferation in the adult rat hippocampus. Kahn L, etal., Eur J Neurosci. 2005 Jan;21(2):493-500. doi: 10.1111/j.1460-9568.2005.03883.x.
11. HSV vector-mediated GAD67 suppresses neuropathic pain induced by perineural HIV gp120 in rats through inhibition of ROS and Wnt5a. Kanda H, etal., Gene Ther. 2016 Apr;23(4):340-8. doi: 10.1038/gt.2016.3. Epub 2016 Jan 11.
12. Genetic mapping of the peripheral sodium channel genes, Scn9a and Scn10a, in the mouse. Kozak CA and Sangameswaran L, Mamm Genome 1996 Oct;7(10):787-8.
13. Associations of glutamate decarboxylase genes with initial sensitivity and age-at-onset of alcohol dependence in the Irish Affected Sib Pair Study of Alcohol Dependence. Kuo PH, etal., Drug Alcohol Depend. 2009 Apr 1;101(1-2):80-7. doi: 10.1016/j.drugalcdep.2008.11.009. Epub 2008 Dec 25.
14. Heroin addiction in African Americans: a hypothesis-driven association study. Levran O, etal., Genes Brain Behav. 2009 Jul;8(5):531-40. Epub 2009 Jun 20.
15. Increased GAD expression in the striatum after transient cerebral ischemia. Li Y, etal., Mol Cell Neurosci. 2010 Dec;45(4):370-7. doi: 10.1016/j.mcn.2010.07.010. Epub 2010 Jul 24.
16. Glutamate decarboxylase genes and alcoholism in Han Taiwanese men. Loh el-W, etal., Alcohol Clin Exp Res. 2006 Nov;30(11):1817-23. doi: 10.1111/j.1530-0277.2006.00218.x.
17. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
18. MGDs mouse GO annotations MGD data from the GO Consortium
19. MGD IEA MGD IEA
20. Increased anxiety-like behaviour and altered GABAergic system in the amygdala and cerebellum of VPA rats - An animal model of autism. Olexová L, etal., Neurosci Lett. 2016 Aug 26;629:9-14. doi: 10.1016/j.neulet.2016.06.035. Epub 2016 Jun 25.
21. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
22. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
23. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
24. Mouse MP Annotation Import Pipeline RGD automated import pipeline
25. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
26. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
27. Increased density of GAD65/67 immunoreactive neurons in the posterior subiculum and parahippocampal gyrus in treated patients with chronic schizophrenia. Schreiber S, etal., World J Biol Psychiatry. 2011 Feb;12(1):57-65. Epub 2011 Jan 20.
28. GAD1 but not GAD2 polymorphisms are associated with heroin addiction phenotypes. Shi Y, etal., Neurosci Lett. 2020 Jan 19;717:134704. doi: 10.1016/j.neulet.2019.134704. Epub 2019 Dec 19.
29. Expression of plasma membrane GABA transporters but not of the vesicular GABA transporter in dentate granule cells after kainic acid seizures. Sperk G, etal., Hippocampus. 2003;13(7):806-15. doi: 10.1002/hipo.10133.
30. Association of polymorphisms in GAD1 and GAD2 genes with methamphetamine dependence. Veerasakul S, etal., Pharmacogenomics. 2017 Jan;18(1):17-22. doi: 10.2217/pgs-2016-0101. Epub 2016 Dec 14.
31. Disease-specific alterations in glutamatergic neurotransmission on inhibitory interneurons in the prefrontal cortex in schizophrenia. Woo TU, etal., Brain Res. 2008 Jul 7;1218:267-77. Epub 2008 Apr 16.
32. Polymorphisms in the glutamate decarboxylase 1 gene associated with heroin dependence. Wu W, etal., Biochem Biophys Res Commun. 2012 May 25;422(1):91-6. doi: 10.1016/j.bbrc.2012.04.112. Epub 2012 Apr 30.
33. DNA methylation reactivates GAD1 expression in cancer by preventing CTCF-mediated polycomb repressive complex 2 recruitment. Yan H, etal., Oncogene. 2016 Jul 28;35(30):3995-4008. doi: 10.1038/onc.2015.423. Epub 2015 Nov 9.
34. Alterations of prefrontal cortex GABAergic transmission in the complex psychotic-like phenotype induced by adolescent delta-9-tetrahydrocannabinol exposure in rats. Zamberletti E, etal., Neurobiol Dis. 2014 Mar;63:35-47. doi: 10.1016/j.nbd.2013.10.028. Epub 2013 Nov 4.
Additional References at PubMed
PMID:972955   PMID:1499869   PMID:1735560   PMID:1968040   PMID:2236059   PMID:7490102   PMID:7935469   PMID:8034327   PMID:8169823   PMID:8243324   PMID:8243826   PMID:8406475  
PMID:8499653   PMID:8570653   PMID:8645317   PMID:8690847   PMID:8713117   PMID:8723764   PMID:8751373   PMID:8833235   PMID:8889548   PMID:8954733   PMID:8956109   PMID:8974318  
PMID:8985122   PMID:9143501   PMID:9144428   PMID:9177246   PMID:9247261   PMID:9291134   PMID:9545497   PMID:9742148   PMID:9876181   PMID:9883721   PMID:10022198   PMID:10211762  
PMID:10325223   PMID:10349636   PMID:10393115   PMID:10422732   PMID:10501176   PMID:10527628   PMID:10556054   PMID:10585298   PMID:10631549   PMID:10640277   PMID:10708484   PMID:10821753  
PMID:10880989   PMID:10931484   PMID:10931824   PMID:11042159   PMID:11060228   PMID:11064363   PMID:11076861   PMID:11124115   PMID:11163262   PMID:11178105   PMID:11217851   PMID:11248103  
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PMID:21040847   PMID:21048147   PMID:21150899   PMID:21173225   PMID:21185888   PMID:21190592   PMID:21205786   PMID:21205797   PMID:21209185   PMID:21267068   PMID:21289201   PMID:21315259  
PMID:21338885   PMID:21354131   PMID:21368052   PMID:21390312   PMID:21430164   PMID:21451052   PMID:21452241   PMID:21460837   PMID:21466690   PMID:21490064   PMID:21491433   PMID:21491541  
PMID:21502287   PMID:21508241   PMID:21532733   PMID:21561989   PMID:21584649   PMID:21592321   PMID:21625513   PMID:21646409   PMID:21658586   PMID:21677750   PMID:21690261   PMID:21730187  
PMID:21743471   PMID:21761482   PMID:21819983   PMID:21832189   PMID:21862448   PMID:21873635   PMID:21925604   PMID:21940433   PMID:21962519   PMID:21965613   PMID:22012263   PMID:22028030  
PMID:22036037   PMID:22037500   PMID:22090513   PMID:22098391   PMID:22103416   PMID:22180776   PMID:22219294   PMID:22246438   PMID:22248045   PMID:22278924   PMID:22323600   PMID:22332935  
PMID:22376909   PMID:22384267   PMID:22423107   PMID:22442076   PMID:22442486   PMID:22461901   PMID:22479201   PMID:22485187   PMID:22492031   PMID:22492355   PMID:22509372   PMID:22522563  
PMID:22522889   PMID:22522945   PMID:22542190   PMID:22573691   PMID:22578469   PMID:22606296   PMID:22627282   PMID:22649248   PMID:22660328   PMID:22699903   PMID:22712760   PMID:22717580  
PMID:22723692   PMID:22723702   PMID:22750123   PMID:22754499   PMID:22764252   PMID:22828515   PMID:22832508   PMID:22854021   PMID:22875923   PMID:22879516   PMID:22886731   PMID:22889265  
PMID:22906231   PMID:22920256   PMID:22969705   PMID:22991444   PMID:23022035   PMID:23034651   PMID:23041929   PMID:23042297   PMID:23044470   PMID:23103418   PMID:23142661   PMID:23149445  
PMID:23180766   PMID:23197722   PMID:23217170   PMID:23220582   PMID:23238719   PMID:23246779   PMID:23254904   PMID:23258346   PMID:23261870   PMID:23283339   PMID:23292680   PMID:23312517  
PMID:23312518   PMID:23353076   PMID:23354328   PMID:23359672   PMID:23392677   PMID:23408898   PMID:23415800   PMID:23437266   PMID:23457538   PMID:23494735   PMID:23519094   PMID:23524566  
PMID:23533083   PMID:23541371   PMID:23542697   PMID:23565079   PMID:23568330   PMID:23575831   PMID:23583111   PMID:23616538   PMID:23631734   PMID:23637172   PMID:23652595   PMID:23727838  
PMID:23732644   PMID:23741482   PMID:23751821   PMID:23798384   PMID:23801984   PMID:23812590   PMID:23817549   PMID:23876745   PMID:23897649   PMID:23912123   PMID:23922229   PMID:23966701  
PMID:24010020   PMID:24027281   PMID:24077066   PMID:24080944   PMID:24101523   PMID:24142862   PMID:24154525   PMID:24167708   PMID:24239560   PMID:24247009   PMID:24275833   PMID:24284070  
PMID:24314728   PMID:24338367   PMID:24348342   PMID:24409113   PMID:24441682   PMID:24451661   PMID:24487590   PMID:24491816   PMID:24507192   PMID:24533597   PMID:24607228   PMID:24612522  
PMID:24613359   PMID:24616509   PMID:24618690   PMID:24623764   PMID:24647940   PMID:24656931   PMID:24659955   PMID:24682237   PMID:24698273   PMID:24715505   PMID:24734001   PMID:24799694  
PMID:24801365   PMID:24843012   PMID:24855953   PMID:24899724   PMID:24952328   PMID:24952961   PMID:24983209   PMID:24987331   PMID:24991763   PMID:24993945   PMID:25024183   PMID:25031405  
PMID:25070536   PMID:25071457   PMID:25085881   PMID:25093893   PMID:25099741   PMID:25116473   PMID:25125027   PMID:25176648   PMID:25220605   PMID:25274830   PMID:25308353   PMID:25313862  
PMID:25322942   PMID:25331604   PMID:25368177   PMID:25404384   PMID:25418135   PMID:25429143   PMID:25467980   PMID:25503925   PMID:25505333   PMID:25512300   PMID:25535916   PMID:25543145  
PMID:25545713   PMID:25561543   PMID:25565962   PMID:25579066   PMID:25620703   PMID:25623945   PMID:25647668   PMID:25649132   PMID:25654255   PMID:25678625   PMID:25691859   PMID:25723967  
PMID:25762221   PMID:25788693   PMID:25789756   PMID:25834049   PMID:25875176   PMID:25904362   PMID:25915477   PMID:25948263   PMID:25966682   PMID:25975775   PMID:25979088   PMID:25988357  
PMID:25993409   PMID:25995483   PMID:26004915   PMID:26005406   PMID:26071364   PMID:26079645   PMID:26188284   PMID:26241953   PMID:26261347   PMID:26311466   PMID:26354921   PMID:26370162  
PMID:26389685   PMID:26395878   PMID:26414615   PMID:26430123   PMID:26443267   PMID:26509897   PMID:26511239   PMID:26516282   PMID:26558388   PMID:26578895   PMID:26579598   PMID:26590422  
PMID:26612516   PMID:26620267   PMID:26651999   PMID:26711115   PMID:26718003   PMID:26718312   PMID:26743624   PMID:26776509   PMID:26813976   PMID:26839365   PMID:26914477   PMID:26921769  
PMID:26949938   PMID:26976589   PMID:27005988   PMID:27023172   PMID:27030712   PMID:27102657   PMID:27177420   PMID:27205882   PMID:27275007   PMID:27277807   PMID:27287386   PMID:27378584  
PMID:27384060   PMID:27385012   PMID:27478017   PMID:27510304   PMID:27540587   PMID:27552836   PMID:27560718   PMID:27578785   PMID:27644329   PMID:27650319   PMID:27662084   PMID:27693255  
PMID:27713499   PMID:27767083   PMID:27770010   PMID:27783222   PMID:27789623   PMID:27798144   PMID:27929058   PMID:27939579   PMID:27956032   PMID:27991901   PMID:28009292   PMID:28039040  
PMID:28041852   PMID:28054918   PMID:28065829   PMID:28076782   PMID:28112735   PMID:28128321   PMID:28199486   PMID:28266561   PMID:28295292   PMID:28386779   PMID:28400125   PMID:28411275  
PMID:28418030   PMID:28467898   PMID:28506990   PMID:28508034   PMID:28511841   PMID:28591570   PMID:28673721   PMID:28676743   PMID:28685891   PMID:28687665   PMID:28698373   PMID:28784306  
PMID:28821666   PMID:28826501   PMID:28850031   PMID:28858615   PMID:28912684   PMID:28916520   PMID:28924206   PMID:28947178   PMID:28970231   PMID:28981617   PMID:29017573   PMID:29038246  
PMID:29045835   PMID:29063602   PMID:29086765   PMID:29137925   PMID:29170629   PMID:29174921   PMID:29184203   PMID:29224725   PMID:29258872   PMID:29294339   PMID:29362511   PMID:29377458  
PMID:29446202   PMID:29467543   PMID:29474907   PMID:29487284   PMID:29488099   PMID:29488136   PMID:29513653   PMID:29525940   PMID:29556956   PMID:29588831   PMID:29661967   PMID:29679009  
PMID:29679559   PMID:29716946   PMID:29752725   PMID:29786085   PMID:29789381   PMID:29795232   PMID:29798891   PMID:29802882   PMID:29847798   PMID:29858484   PMID:29867344   PMID:29874580  
PMID:29901792   PMID:29915137   PMID:29922981   PMID:29949744   PMID:29960053   PMID:29972793   PMID:30033152   PMID:30049711   PMID:30127719   PMID:30143575   PMID:30146317   PMID:30208054  
PMID:30228230   PMID:30233323   PMID:30276662   PMID:30297409   PMID:30315415   PMID:30323744   PMID:30325514   PMID:30341178   PMID:30344048   PMID:30348983   PMID:30377227   PMID:30387713  
PMID:30413647   PMID:30498032   PMID:30541071   PMID:30592042   PMID:30635555   PMID:30692221   PMID:30699338   PMID:30712868   PMID:30713103   PMID:30791216   PMID:30796806   PMID:30992372  
PMID:31082736   PMID:31084527   PMID:31152445   PMID:31159922   PMID:31159923   PMID:31200100   PMID:31249508   PMID:31263776   PMID:31275123   PMID:31285615   PMID:31507383   PMID:31521773  
PMID:31548232   PMID:31608978   PMID:31665922   PMID:31676717   PMID:31714935   PMID:31735496   PMID:31742552   PMID:31767679   PMID:31780328   PMID:31787886   PMID:31850343   PMID:31861806  
PMID:31872525   PMID:31914386   PMID:31942002   PMID:31944180   PMID:32101698   PMID:32123907   PMID:32213554   PMID:32234482   PMID:32241803   PMID:32253239   PMID:32317715   PMID:32320667  
PMID:32325033   PMID:32378798   PMID:32499648   PMID:32514634   PMID:32547372   PMID:32574560   PMID:32675279   PMID:32684634   PMID:32744742   PMID:32853550   PMID:32868797   PMID:32917598  
PMID:32936679   PMID:32976762   PMID:32978288   PMID:33005027   PMID:33046550   PMID:33053343   PMID:33087478   PMID:33154347   PMID:33163687   PMID:33173030   PMID:33199411   PMID:33220177  
PMID:33256836   PMID:33290502   PMID:33303946   PMID:33319361   PMID:33328840   PMID:33402420   PMID:33408624   PMID:33413507   PMID:33522480   PMID:33574458   PMID:33585465   PMID:33616936  
PMID:33626347   PMID:33649354   PMID:33739968   PMID:33769282   PMID:33786818   PMID:33789118   PMID:33827819   PMID:33851097   PMID:33863910   PMID:33899737   PMID:34010641   PMID:34028352  
PMID:34039657   PMID:34058264   PMID:34133925   PMID:34177467   PMID:34305510   PMID:34314698   PMID:34321999   PMID:34339499   PMID:34411234   PMID:34462307   PMID:34491914   PMID:34518367  
PMID:34542410   PMID:34564702   PMID:34593806   PMID:34638827   PMID:34648327   PMID:34671237   PMID:34676525   PMID:34678375   PMID:34706225   PMID:34730112   PMID:34789835   PMID:34815492  
PMID:35156680   PMID:35197316   PMID:35277502   PMID:35297763   PMID:35465098   PMID:35615067   PMID:35663550   PMID:35672398   PMID:35705078   PMID:35815619   PMID:35831953   PMID:35858542  
PMID:35935334   PMID:35940240   PMID:35998632   PMID:36030255   PMID:36040301   PMID:36067211   PMID:36067316   PMID:36104279   PMID:36130507   PMID:36185360   PMID:36260661   PMID:36302841  
PMID:36335068   PMID:36351530   PMID:36417873   PMID:36568982   PMID:36619672   PMID:36733270   PMID:36735778   PMID:36768252   PMID:36835612   PMID:36922541   PMID:36924980   PMID:37146152  
PMID:37198238   PMID:37205722   PMID:37254876   PMID:37298722   PMID:37307456   PMID:37311798   PMID:37321992   PMID:37415159   PMID:37653166   PMID:37759737   PMID:37770578   PMID:37983249  
PMID:37992714   PMID:38089586   PMID:38157299   PMID:38344749   PMID:38347200   PMID:38388443   PMID:38452762   PMID:38482494   PMID:38643976   PMID:38697111   PMID:38736483   PMID:38750507  
PMID:38917805   PMID:39048051   PMID:39216080   PMID:39226364   PMID:39303712   PMID:39348458   PMID:39366958   PMID:39387358   PMID:39405291   PMID:39569362   PMID:39592219   PMID:39999176  
PMID:40129704  


Genomics

Comparative Map Data
Gad1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39270,392,109 - 70,432,358 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl270,383,416 - 70,432,358 (+)EnsemblGRCm39 Ensembl
GRCm38270,561,303 - 70,602,014 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl270,553,072 - 70,602,014 (+)EnsemblGRCm38mm10GRCm38
MGSCv37270,400,221 - 70,440,069 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36270,363,052 - 70,402,853 (+)NCBIMGSCv36mm8
Celera272,228,088 - 72,268,083 (+)NCBICelera
Cytogenetic Map2C2NCBI
cM Map241.63NCBI
GAD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382170,813,210 - 170,861,151 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2170,813,213 - 170,861,151 (+)EnsemblGRCh38hg38GRCh38
GRCh372171,673,397 - 171,717,661 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362171,381,446 - 171,425,907 (+)NCBINCBI36Build 36hg18NCBI36
Build 342171,498,706 - 171,524,775NCBI
Celera2165,289,914 - 165,334,327 (+)NCBICelera
Cytogenetic Map2q31.1NCBI
HuRef2163,562,349 - 163,606,375 (+)NCBIHuRef
CHM1_12171,679,435 - 171,723,884 (+)NCBICHM1_1
T2T-CHM13v2.02171,290,353 - 171,338,262 (+)NCBIT2T-CHM13v2.0
Gad1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8375,777,260 - 75,818,099 (+)NCBIGRCr8
mRatBN7.2355,369,704 - 55,410,335 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl355,369,704 - 55,410,333 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx358,774,583 - 58,815,086 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0367,358,166 - 67,398,662 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0365,120,847 - 65,161,332 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0356,861,440 - 56,902,139 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl356,861,396 - 56,902,157 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0363,479,963 - 63,519,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4352,789,370 - 52,830,038 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1352,685,741 - 52,726,408 (+)NCBI
Celera354,926,942 - 54,967,478 (+)NCBICelera
Cytogenetic Map3q22NCBI
Gad1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554493,963,705 - 4,001,850 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554493,964,006 - 4,001,850 (-)NCBIChiLan1.0ChiLan1.0
GAD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21373,489,127 - 73,533,319 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B73,504,103 - 73,548,292 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B58,100,623 - 58,145,045 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B175,558,538 - 175,602,951 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B175,558,538 - 175,602,944 (+)Ensemblpanpan1.1panPan2
GAD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13615,351,289 - 15,391,701 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3615,349,683 - 15,391,824 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3615,364,114 - 15,403,437 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03615,474,678 - 15,516,842 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3615,474,925 - 15,516,838 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13615,565,032 - 15,604,314 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03615,552,796 - 15,592,193 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03615,664,544 - 15,703,870 (+)NCBIUU_Cfam_GSD_1.0
Gad1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303132,606,889 - 132,647,134 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365091,161,094 - 1,201,576 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365091,160,559 - 1,201,037 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1576,991,928 - 77,034,812 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11576,991,863 - 77,034,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21586,375,113 - 86,419,237 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap15q21-q22NCBI
GAD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11056,351,495 - 56,396,476 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1056,353,253 - 56,396,524 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666040143,149,876 - 143,195,107 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gad1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247878,308,759 - 8,347,686 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247878,308,759 - 8,345,929 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gad1
2069 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:1286
Count of miRNA genes:686
Interacting mature miRNAs:841
Transcripts:ENSMUST00000094934, ENSMUST00000123330, ENSMUST00000130604, ENSMUST00000130618, ENSMUST00000130998, ENSMUST00000140478, ENSMUST00000148210, ENSMUST00000155979
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
13464141Hbbcq3_mhemoglobin concentration QTL 3 (mouse)25244801986448136Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
1301402Ap2q_malcohol preference 2 QTL (mouse)Not determined24352061277520756Mouse
1300761Lgth1_mbody length 1 (mouse)Not determined25170327685703425Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
1301405Etohr_methanol response acute (mouse)Not determined26300595497006113Mouse
1301660Iba1_minduction of brown adipocytes 1 (mouse)Not determined267647887101648142Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
1300875Taste1_mtaste-saccharin preference 1 (mouse)Not determined25092317584923278Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260520612119355518Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1300662Etohila_methanol induced locomotor activity (mouse)Not determined26300595497006113Mouse
1300788Cia2_mcollagen induced arthritis QTL 2 (mouse)Not determined24352061277520756Mouse
10053681Lith24_mlithogenic gene 24 (mouse)Not determined26300595497006113Mouse
1301048Actre2_mactivity response to ethanol 2 (mouse)Not determined26300595497006113Mouse
1300671Cia4_mcollagen induced arthritis QTL 4 (mouse)Not determined24352061277520756Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
1301948Elsgp3_melevated serum gp70 3 (mouse)Not determined268724269102724407Mouse
1301411Pitm1_mprion incubation time 1 (mouse)Not determined24352061277520756Mouse
4141069Pbwg1.5_mpostnatal body weight growth 1.5 (mouse)Not determined4352061277520756Mouse
1558820Moo1_mmodifier of Odc1 (mouse)Not determined174826974682269934Mouse
13432178Actres2_mactivity response to ethanol/saline 2 (mouse)26069228774092287Mouse
12738429Lfibq18_mliver fibrosis QTL 18 (mouse)25791999191919991Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
11038703Ltpr1_mLeishmania tropica response 1 (mouse)23997166573971811Mouse
1300568Hdl1_mhigh density lipoprotein (HDL) level 1 (mouse)Not determined24826974682269934Mouse
1559001Eae33_mexperimental allergic encephalomyelitis susceptibility 33 (mouse)Not determined23599167971609412Mouse
1301059Hrtfm1_mheart failure modifier 1 (mouse)Not determined26759194074964933Mouse
1301703Bomd3_mbone mineral density 3 (mouse)Not determined26300595497006113Mouse
1301747Eae21_mexperimental allergic encephalomyelitis 21 (mouse)Not determined24826974682269934Mouse
1301235Alcw4_malcohol withdrawal 4 (mouse)Not determined24826974682269934Mouse
4141406Alpq2_malcohol preference QTL 2 (mouse)Not determined25752411791524288Mouse
10755526Lymph1_mlymphocyte differential 1 (mouse)25081931484819314Mouse
13463471Hctq6_mhematocrit QTL 6 (mouse)25244801986448136Mouse
1301873Hsl1_mhyperoxia susceptibility locus 1 (mouse)Not determined26357015497570301Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240885493114910165Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755532Lymph5_mlymphocyte differential 5 (mouse)24419901778199017Mouse
1301882Etohc2_methanol consumption 2 (mouse)Not determined268724269102724407Mouse
11532740Pbwg1.10_mpostnatal body weight growth 1.10 (mouse)24813241282132495Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13463482Mchq17_mmean corpuscular hemoglobin QTL 17 (mouse)267647887101648142Mouse
1301480Pbwg1_mpostnatal body weight growth 1 (mouse)Not determined24182071975820843Mouse
10044002Hdl7_mHDL level 7 (mouse)Not determined26300595497006113Mouse

Markers in Region
Z49976  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38270,601,229 - 70,601,421UniSTSGRCm38
MGSCv37270,439,286 - 70,439,478UniSTSGRCm37
Celera272,267,300 - 72,267,492UniSTS
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Whitehead/MRC_RH21109.8UniSTS
Whitehead_YAC2 UniSTS
PMC30678P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38270,563,729 - 70,563,903UniSTSGRCm38
MGSCv37270,401,786 - 70,401,960UniSTSGRCm37
Celera272,229,652 - 72,229,826UniSTS
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Gad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Gad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Gad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Gad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Gad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Gad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Gad1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38270,601,725 - 70,601,945UniSTSGRCm38
MGSCv37270,439,782 - 70,440,002UniSTSGRCm37
Celera272,267,796 - 72,268,016UniSTS
Cytogenetic Map2DUniSTS
cM Map243.0UniSTS
Z49976  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38270,601,075 - 70,601,155UniSTSGRCm38
MGSCv37270,439,132 - 70,439,212UniSTSGRCm37
Celera272,267,146 - 72,267,226UniSTS
Cytogenetic Map2DUniSTS
Whitehead/MRC_RH21109.8UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001312900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001420106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_008077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_185135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB006974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC097273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF326547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF326548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF354680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF483492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF483493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI845043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK046276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK054554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK148497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160410 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY265972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D88826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC134210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM102984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KM102985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S67453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y12257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z49976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z49977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z49978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000094934   ⟹   ENSMUSP00000092539
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,392,386 - 70,432,358 (+)Ensembl
GRCm38.p6 Ensembl270,562,042 - 70,602,014 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123330   ⟹   ENSMUSP00000116301
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,393,786 - 70,416,290 (+)Ensembl
GRCm38.p6 Ensembl270,563,442 - 70,585,946 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130604   ⟹   ENSMUSP00000117721
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,392,386 - 70,417,480 (+)Ensembl
GRCm38.p6 Ensembl270,562,042 - 70,587,136 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130618   ⟹   ENSMUSP00000117521
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,383,416 - 70,397,577 (+)Ensembl
GRCm38.p6 Ensembl270,553,072 - 70,567,233 (+)Ensembl
Ensembl Acc Id: ENSMUST00000130998   ⟹   ENSMUSP00000119379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,393,243 - 70,415,465 (+)Ensembl
GRCm38.p6 Ensembl270,562,899 - 70,585,121 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140478
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,396,721 - 70,432,356 (+)Ensembl
GRCm38.p6 Ensembl270,566,377 - 70,602,012 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148210   ⟹   ENSMUSP00000119733
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,392,540 - 70,414,944 (+)Ensembl
GRCm38.p6 Ensembl270,562,196 - 70,584,600 (+)Ensembl
Ensembl Acc Id: ENSMUST00000155979
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl270,392,507 - 70,407,474 (+)Ensembl
GRCm38.p6 Ensembl270,562,163 - 70,577,130 (+)Ensembl
RefSeq Acc Id: NM_001312900   ⟹   NP_001299829
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,415,077 (+)NCBI
GRCm38270,562,129 - 70,585,121 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001420099   ⟹   NP_001407028
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,432,358 (+)NCBI
RefSeq Acc Id: NM_001420100   ⟹   NP_001407029
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,393,210 - 70,432,358 (+)NCBI
RefSeq Acc Id: NM_001420101   ⟹   NP_001407030
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,393,669 - 70,432,358 (+)NCBI
RefSeq Acc Id: NM_001420102   ⟹   NP_001407031
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,415,077 (+)NCBI
RefSeq Acc Id: NM_001420103   ⟹   NP_001407032
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,393,210 - 70,415,077 (+)NCBI
RefSeq Acc Id: NM_001420104   ⟹   NP_001407033
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,393,669 - 70,415,077 (+)NCBI
RefSeq Acc Id: NM_001420105   ⟹   NP_001407034
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,398,121 (+)NCBI
RefSeq Acc Id: NM_001420106   ⟹   NP_001407035
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,398,121 (+)NCBI
RefSeq Acc Id: NM_008077   ⟹   NP_032103
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,432,358 (+)NCBI
GRCm38270,562,129 - 70,602,014 (+)NCBI
MGSCv37270,400,221 - 70,440,069 (+)RGD
Celera272,228,088 - 72,268,083 (+)RGD
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_185134
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,432,358 (+)NCBI
RefSeq Acc Id: NR_185135
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,513 - 70,432,358 (+)NCBI
RefSeq Acc Id: XR_003950660
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,393,107 - 70,432,358 (+)NCBI
GRCm38270,562,765 - 70,602,014 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003950661
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39270,392,109 - 70,432,358 (+)NCBI
GRCm38270,562,326 - 70,602,014 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001299829 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407028 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407029 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407030 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407031 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407032 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407033 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407034 (Get FASTA)   NCBI Sequence Viewer  
  NP_001407035 (Get FASTA)   NCBI Sequence Viewer  
  NP_032103 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH27059 (Get FASTA)   NCBI Sequence Viewer  
  AAL37393 (Get FASTA)   NCBI Sequence Viewer  
  AAL37394 (Get FASTA)   NCBI Sequence Viewer  
  AAL90766 (Get FASTA)   NCBI Sequence Viewer  
  AAL90767 (Get FASTA)   NCBI Sequence Viewer  
  AAP14008 (Get FASTA)   NCBI Sequence Viewer  
  AFX68720 (Get FASTA)   NCBI Sequence Viewer  
  AIS36179 (Get FASTA)   NCBI Sequence Viewer  
  AIS36180 (Get FASTA)   NCBI Sequence Viewer  
  BAC35823 (Get FASTA)   NCBI Sequence Viewer  
  BAC84983 (Get FASTA)   NCBI Sequence Viewer  
  BAE23133 (Get FASTA)   NCBI Sequence Viewer  
  BAE28589 (Get FASTA)   NCBI Sequence Viewer  
  BAE36059 (Get FASTA)   NCBI Sequence Viewer  
  BAE37529 (Get FASTA)   NCBI Sequence Viewer  
  CAA72934 (Get FASTA)   NCBI Sequence Viewer  
  CAA90277 (Get FASTA)   NCBI Sequence Viewer  
  EDL27063 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092539
  ENSMUSP00000092539.5
  ENSMUSP00000116301
  ENSMUSP00000117521
  ENSMUSP00000119379
  ENSMUSP00000119733
GenBank Protein P48318 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_032103   ⟸   NM_008077
- Peptide Label: isoform GAD67
- UniProtKB: O08685 (UniProtKB/Swiss-Prot),   P48318 (UniProtKB/Swiss-Prot),   Q548L6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001299829   ⟸   NM_001312900
- Peptide Label: isoform GAD25
- UniProtKB: D3Z1L8 (UniProtKB/TrEMBL),   D3Z5S3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000119379   ⟸   ENSMUST00000130998
Ensembl Acc Id: ENSMUSP00000117721   ⟸   ENSMUST00000130604
Ensembl Acc Id: ENSMUSP00000117521   ⟸   ENSMUST00000130618
Ensembl Acc Id: ENSMUSP00000119733   ⟸   ENSMUST00000148210
Ensembl Acc Id: ENSMUSP00000092539   ⟸   ENSMUST00000094934
Ensembl Acc Id: ENSMUSP00000116301   ⟸   ENSMUST00000123330
RefSeq Acc Id: NP_001407028   ⟸   NM_001420099
- Peptide Label: isoform GAD67
- UniProtKB: P48318 (UniProtKB/Swiss-Prot),   O08685 (UniProtKB/Swiss-Prot),   Q548L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407031   ⟸   NM_001420102
- Peptide Label: isoform GAD25
- UniProtKB: D3Z5S3 (UniProtKB/TrEMBL),   D3Z1L8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407035   ⟸   NM_001420106
- Peptide Label: isoform c
- UniProtKB: D3Z466 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407034   ⟸   NM_001420105
- Peptide Label: isoform c
- UniProtKB: D3Z466 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407029   ⟸   NM_001420100
- Peptide Label: isoform GAD67
- UniProtKB: P48318 (UniProtKB/Swiss-Prot),   O08685 (UniProtKB/Swiss-Prot),   Q548L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407032   ⟸   NM_001420103
- Peptide Label: isoform GAD25
- UniProtKB: D3Z5S3 (UniProtKB/TrEMBL),   D3Z1L8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407030   ⟸   NM_001420101
- Peptide Label: isoform GAD67
- UniProtKB: P48318 (UniProtKB/Swiss-Prot),   O08685 (UniProtKB/Swiss-Prot),   Q548L6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001407033   ⟸   NM_001420104
- Peptide Label: isoform GAD25
- UniProtKB: D3Z5S3 (UniProtKB/TrEMBL),   D3Z1L8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P48318-F1-model_v2 AlphaFold P48318 1-593 view protein structure

Promoters
RGD ID:6831420
Promoter ID:MM_KWN:29587
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000083433,   OTTMUST00000083437,   UC008JZM.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36270,400,846 - 70,401,346 (+)MPROMDB
RGD ID:6877536
Promoter ID:EPDNEW_M2219
Type:initiation region
Name:Gad1_1
Description:Mus musculus glutamate decarboxylase 1 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2220  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38270,562,181 - 70,562,241EPDNEW
RGD ID:6877538
Promoter ID:EPDNEW_M2220
Type:multiple initiation site
Name:Gad1_2
Description:Mus musculus glutamate decarboxylase 1 , transcript variant 1,mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M2219  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38270,562,866 - 70,562,926EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95632 AgrOrtholog
Ensembl Genes ENSMUSG00000070880 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000094934 ENTREZGENE
  ENSMUST00000094934.11 UniProtKB/Swiss-Prot
  ENSMUST00000123330 ENTREZGENE
  ENSMUST00000130618 ENTREZGENE
  ENSMUST00000130998 ENTREZGENE
  ENSMUST00000148210 ENTREZGENE
Gene3D-CATH 3.40.640.10 UniProtKB/Swiss-Prot
  3.90.1150.170 UniProtKB/Swiss-Prot
InterPro PyrdxlP-dep_de-COase UniProtKB/Swiss-Prot
  PyrdxlP-dep_Trfase UniProtKB/Swiss-Prot
  PyrdxlP-dep_Trfase_major UniProtKB/Swiss-Prot
  Pyridoxal-P_BS UniProtKB/Swiss-Prot
KEGG Report mmu:14415 UniProtKB/Swiss-Prot
MGD MGI:95632 ENTREZGENE
NCBI Gene 14415 ENTREZGENE
PANTHER GLUTAMATE DECARBOXYLASE 1 UniProtKB/Swiss-Prot
  GLUTAMATE DECARBOXYLASE-RELATED UniProtKB/Swiss-Prot
Pfam Pyridoxal_deC UniProtKB/Swiss-Prot
PhenoGen Gad1 PhenoGen
PROSITE DDC_GAD_HDC_YDC UniProtKB/Swiss-Prot
Superfamily-SCOP SSF53383 UniProtKB/Swiss-Prot
UniProt D3Z1L8 ENTREZGENE, UniProtKB/TrEMBL
  D3Z466 ENTREZGENE, UniProtKB/TrEMBL
  D3Z5S3 ENTREZGENE, UniProtKB/TrEMBL
  DCE1_MOUSE UniProtKB/Swiss-Prot
  O08685 ENTREZGENE
  P48318 ENTREZGENE
  Q3TQ56_MOUSE UniProtKB/TrEMBL
  Q548L6 ENTREZGENE, UniProtKB/TrEMBL
  Q8C6I7_MOUSE UniProtKB/TrEMBL
UniProt Secondary O08685 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-05-15 Gad1  glutamate decarboxylase 1  Gad1  glutamic acid decarboxylase 1  Symbol and/or name change 5135510 APPROVED