Fshb (follicle stimulating hormone beta) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Fshb (follicle stimulating hormone beta) Mus musculus
Analyze
Symbol: Fshb
Name: follicle stimulating hormone beta
RGD ID: 10600
MGI Page MGI
Description: Predicted to contribute to hormone activity. Involved in several processes, including gonad development; positive regulation of bone resorption; and regulation of osteoclast differentiation. Localizes to cytoplasm. Is expressed in adenohypophysis pars anterior and pituitary gland. Human ortholog(s) of this gene implicated in amenorrhea and hypogonadotropic hypogonadism 24 without anosmia. Orthologous to human FSHB (follicle stimulating hormone subunit beta).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: follicle-stimulating hormone beta subunit; follitropin beta chain; follitropin subunit beta; FS; FSH; FSH-B; FSH-beta; Fshbe; Fshbeta
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392106,886,331 - 106,889,996 (-)NCBIGRCm39mm39
GRCm382107,055,986 - 107,059,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2107,056,140 - 107,059,656 (-)EnsemblGRCm38mm10GRCm38
MGSCv372106,896,297 - 106,899,808 (-)NCBIGRCm37mm9NCBIm37
MGSCv362106,856,979 - 106,860,490 (-)NCBImm8
Celera2108,277,790 - 108,281,303 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(R)-lipoic acid  (ISO)
(S)-nicotine  (ISO)
1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane  (ISO)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-Dibromo-3-chloropropane  (ISO)
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP,ISO)
17beta-estradiol 3-benzoate  (EXP,ISO)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (EXP,ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,5-trichlorophenol  (ISO)
2,4-Dihydroxybenzophenone  (ISO)
2-hydroxyestrone  (ISO)
2-tert-butylhydroquinone  (ISO)
3',5'-cyclic AMP  (EXP,ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',5-triiodo-L-thyronine  (ISO)
3,4-dihydroxybenzoic acid  (ISO)
3-[(4-anilinophenyl)diazenyl]benzene-1-sulfonic acid  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-Hydroxybenzophenone  (ISO)
4-nitrophenyl beta-D-xyloside  (ISO)
4-nonylphenol  (ISO)
4-vinylcyclohexene dioxide  (ISO)
5-formyltetrahydrofolic acid  (ISO)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acetaldehyde  (EXP)
acrylamide  (ISO)
adenosine  (EXP)
AICA ribonucleotide  (ISO)
alcohol  (ISO)
all-trans-retinoic acid  (EXP,ISO)
aminoglutethimide  (EXP,ISO)
ammonium chloride  (ISO)
anastrozole  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
apocynin  (ISO)
arecoline  (ISO)
Aroclor 1254  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
beta-naphthoflavone  (ISO)
betamethasone  (ISO)
bezafibrate  (ISO)
bicalutamide  (EXP)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bromocriptine  (ISO)
buserelin  (ISO)
Butylbenzyl phthalate  (ISO)
Butylparaben  (ISO)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
carbaryl  (ISO)
carboplatin  (ISO)
celecoxib  (ISO)
cetrorelix  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
chrysin  (ISO)
cimetidine  (ISO)
cisplatin  (ISO)
clomiphene  (ISO)
colforsin daropate hydrochloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
corticosterone  (EXP)
crizotinib  (ISO)
CU-O LINKAGE  (ISO)
cyclophosphamide  (ISO)
cyclosporin A  (ISO)
cyhalothrin  (ISO)
cypermethrin  (EXP,ISO)
cyproterone acetate  (ISO)
danazol  (ISO)
DDE  (ISO)
DDT  (EXP,ISO)
dexamethasone  (EXP)
dibutyl phthalate  (EXP,ISO)
Dicyclohexyl phthalate  (ISO)
dienogest  (ISO)
diethylstilbestrol  (EXP,ISO)
dimethoate  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
disulfiram  (EXP)
doxorubicin  (ISO)
elemental selenium  (ISO)
Estradiol 17beta-cyclopentylpropionate  (ISO)
ethanol  (ISO)
ethylene glycol bis(2-aminoethyl)tetraacetic acid  (EXP)
fenarimol  (ISO)
fenitrothion  (ISO)
fenvalerate  (ISO)
flufenamic acid  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
formestane  (ISO)
fulvestrant  (ISO)
gamma-hexachlorocyclohexane  (ISO)
genistein  (ISO)
glutathione  (ISO)
glyphosate  (EXP,ISO)
Goserelin  (ISO)
GW 1929  (ISO)
herbicide  (ISO)
hexachlorobenzene  (ISO)
hyaluronic acid  (ISO)
hydroquinone O-beta-D-glucopyranoside  (EXP)
isoprenaline  (ISO)
ketoconazole  (EXP)
L-ascorbic acid  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
letrozole  (ISO)
levonorgestrel  (ISO)
lipoic acid  (ISO)
lipopolysaccharide  (EXP,ISO)
lithium atom  (ISO)
lithium hydride  (ISO)
LY294002  (ISO)
manganese(II) chloride  (ISO)
medroxyprogesterone  (ISO)
medroxyprogesterone acetate  (ISO)
melatonin  (ISO)
menadione  (ISO)
metformin  (ISO)
methomyl  (ISO)
methotrexate  (ISO)
methoxyacetic acid  (ISO)
methoxychlor  (EXP,ISO)
metolachlor  (ISO)
mifepristone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
monosodium L-glutamate  (EXP)
morin  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (ISO)
N-acetyl-L-cysteine  (ISO)
N-methyl-N-nitrosourea  (ISO)
naltrexone  (ISO)
nickel atom  (ISO)
nicotine  (ISO)
nimodipine  (EXP)
octreotide  (EXP,ISO)
oxybenzone  (ISO)
pasireotide  (EXP,ISO)
pentobarbital  (ISO)
perfluorododecanoic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
perphenazine  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
potassium dichromate  (ISO)
pregnenolone  (ISO)
procymidone  (ISO)
progesterone  (EXP,ISO)
promegestone  (EXP)
propylparaben  (ISO)
quercetin  (ISO)
resveratrol  (EXP,ISO)
risperidone  (ISO)
rolipram  (ISO)
SB 203580  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
sildenafil citrate  (EXP)
sirolimus  (ISO)
sodium arsenite  (ISO)
sodium chlorate  (ISO)
sodium fluoride  (ISO)
sophoraflavanone B  (ISO)
spironolactone  (ISO)
streptozocin  (EXP,ISO)
succimer  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
taurine  (ISO)
testosterone  (EXP,ISO)
testosterone enanthate  (ISO)
Testosterone propionate  (ISO)
thimerosal  (EXP)
titanium dioxide  (EXP,ISO)
tributylstannane  (ISO)
trichlorfon  (ISO)
triciribine  (ISO)
triclosan  (ISO)
trilostane  (ISO)
tyrphostin AG 1478  (ISO)
uranium atom  (ISO)
valsartan  (ISO)
vinclozolin  (ISO)
vitamin E  (ISO)
vitexin  (EXP)
wortmannin  (ISO)
ziram  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:1507224   PMID:1735560   PMID:1774063   PMID:1916246   PMID:1928829   PMID:1970329   PMID:2173141   PMID:2347591   PMID:3146546   PMID:7588205   PMID:7659091   PMID:7835084  
PMID:8020965   PMID:8027530   PMID:8034307   PMID:8389457   PMID:8397485   PMID:8413314   PMID:8543187   PMID:8612966   PMID:8903730   PMID:8923471   PMID:9020850   PMID:9415397  
PMID:9645705   PMID:10049363   PMID:10349636   PMID:10367888   PMID:10379885   PMID:10491617   PMID:10628753   PMID:10773385   PMID:11017775   PMID:11042159   PMID:11076861   PMID:11415992  
PMID:11416011   PMID:11459797   PMID:11507212   PMID:11606457   PMID:11717129   PMID:11807026   PMID:11884082   PMID:11889558   PMID:11944940   PMID:12183375   PMID:12466851   PMID:12477932  
PMID:12488339   PMID:12554789   PMID:12578530   PMID:12651892   PMID:12730328   PMID:12801993   PMID:12959983   PMID:14551232   PMID:14570911   PMID:14654247   PMID:14701940   PMID:15112318  
PMID:15232063   PMID:15349847   PMID:15385421   PMID:15459176   PMID:15489334   PMID:15761027   PMID:16141072   PMID:16141073   PMID:16141355   PMID:16384867   PMID:16414183   PMID:16416028  
PMID:16537498   PMID:16556738   PMID:16602821   PMID:16630814   PMID:16675544   PMID:16806148   PMID:16840533   PMID:17003115   PMID:17082263   PMID:17255205   PMID:17371839   PMID:17392792  
PMID:17475932   PMID:17478551   PMID:17540727   PMID:17717072   PMID:17959774   PMID:18079204   PMID:18467444   PMID:18480465   PMID:18495683   PMID:19164180   PMID:19211807   PMID:19357364  
PMID:19474196   PMID:19515997   PMID:19641178   PMID:20008557   PMID:20233786   PMID:20371653   PMID:20702576   PMID:20805495   PMID:21084383   PMID:21228213   PMID:21622537   PMID:21636786  
PMID:21659477   PMID:21664424   PMID:21700720   PMID:21726557   PMID:21873635   PMID:22294749   PMID:22517620   PMID:22549017   PMID:22908268   PMID:22945632   PMID:23143598   PMID:23150495  
PMID:23209701   PMID:23211523   PMID:23242526   PMID:23275456   PMID:23284914   PMID:23288907   PMID:23340250   PMID:23393127   PMID:23518924   PMID:23525221   PMID:23674600   PMID:24065703  
PMID:24227653   PMID:24514953   PMID:24601881   PMID:24706813   PMID:24739304   PMID:25100748   PMID:25105693   PMID:25315894   PMID:25385589   PMID:25423188   PMID:25525274   PMID:25635942  
PMID:25915183   PMID:26063870   PMID:26651607   PMID:26678830   PMID:26764381   PMID:26789235   PMID:26835742   PMID:26911932   PMID:27079169   PMID:27101301   PMID:27466366   PMID:27561202  
PMID:28506993   PMID:28807898   PMID:28817115   PMID:28911172   PMID:29263200   PMID:29365049   PMID:29442133   PMID:29796621   PMID:30060157   PMID:30307165   PMID:31781038   PMID:32171529  
PMID:32191302   PMID:32270195  


Genomics

Comparative Map Data
Fshb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392106,886,331 - 106,889,996 (-)NCBIGRCm39mm39
GRCm382107,055,986 - 107,059,651 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2107,056,140 - 107,059,656 (-)EnsemblGRCm38mm10GRCm38
MGSCv372106,896,297 - 106,899,808 (-)NCBIGRCm37mm9NCBIm37
MGSCv362106,856,979 - 106,860,490 (-)NCBImm8
Celera2108,277,790 - 108,281,303 (-)NCBICelera
Cytogenetic Map2E3NCBI
cM Map256.02NCBI
FSHB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1130,231,014 - 30,235,261 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl1130,231,016 - 30,235,261 (+)EnsemblGRCh38hg38GRCh38
GRCh381130,231,014 - 30,235,194 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371130,252,563 - 30,256,824 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371130,252,561 - 30,256,741 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361130,209,139 - 30,213,400 (+)NCBINCBI36hg18NCBI36
Build 341130,210,025 - 30,211,923NCBI
Celera1130,398,958 - 30,403,219 (+)NCBI
Cytogenetic Map11p14.1NCBI
HuRef1129,945,298 - 29,949,559 (+)NCBIHuRef
CHM1_11130,251,554 - 30,255,815 (+)NCBICHM1_1
Fshb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2393,548,560 - 93,552,370 (-)NCBI
Rnor_6.0 Ensembl398,088,324 - 98,092,131 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0398,088,321 - 98,092,131 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03104,700,141 - 104,703,954 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4392,569,344 - 92,571,254 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1392,465,296 - 92,467,695 (-)NCBI
Celera392,595,527 - 92,599,337 (-)NCBICelera
Cytogenetic Map3q33NCBI
Fshb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554768,795,351 - 8,797,244 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554768,795,354 - 8,797,244 (+)NCBIChiLan1.0ChiLan1.0
FSHB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11130,095,759 - 30,100,012 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1130,095,486 - 30,100,167 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01130,204,193 - 30,208,410 (+)NCBIMhudiblu_PPA_v0panPan3
FSHB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl2150,280,208 - 50,282,680 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.12150,279,320 - 50,282,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Fshb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365337,395,206 - 7,397,266 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FSHB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl230,395,018 - 30,399,274 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1230,395,769 - 30,399,282 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2232,861,492 - 32,865,005 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap2p1.6-p1.2NCBI
FSHB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1134,943,544 - 34,947,796 (-)NCBI
ChlSab1.1 Ensembl134,943,568 - 34,946,863 (-)Ensembl
Fshb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476619,328,730 - 19,332,385 (+)NCBI


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357829Lvrq1_mliver weight QTL 1 (mouse)Not determined220892967119064359Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220892967119064359Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220892967119064359Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220892967119064359Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220892967119064359Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220892967119064359Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220892967119064359Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224334620148858457Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229417935148533014Mouse
1301109Dntcs2_mdental caries susceptibility 2 (mouse)Not determined240995481115079684Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245457623145470727Mouse
1357577Trmq3_mT cell ratio modifier QTL 3 (mouse)Not determined260690268119525037Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)262000000137000000Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265439402162677006Mouse
4142088Parms1_mpatched associated RMS 1 (mouse)Not determined74693773114293051Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274693773129371085Mouse
1301374Cplaq7_mcircadian period of locomotor activity 7 (mouse)Not determined276591138110591306Mouse
10043894Bw22_mbody weight QTL 22 (mouse)Not determined281064989115064989Mouse
1558901Skmw8_mskeletal muscle weight 8 (mouse)Not determined284178143118178248Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284182854148680255Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284182854148825550Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285893925181254801Mouse
11038697Ltpr2d_mLeishmania tropica response 2d (mouse)286265371120265478Mouse
11038698Ltpr2c_mLeishmania tropica response 2c (mouse)286265371120265478Mouse
1300852Lmr14_mleishmaniasis resistance 14 (mouse)Not determined286265371120265478Mouse
11049565Lmr28g_mleishmaniasis resistance 28g (mouse)286265371120265478Mouse
1301834Bits1_mbitterness sensitivity 1 (mouse)Not determined287610298121610433Mouse
11532731Sluc31a_msusceptibility to lung cancer 31a (mouse)288184658122184825Mouse
4142223Femwf4_mfemur work to failure 4 (mouse)Not determined88313078122313225Mouse
1301098Cd8mts3_mCD8 memory T cell subset 3 (mouse)Not determined291259629125259759Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292948120126948262Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294400000154400000Mouse
4141448Mpaps1_mmicrophthalmia anophthalmia susceptibility 1 (mouse)Not determined97198212112284851Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297292889131293051Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297292889131293051Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297379883131379883Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297379883131379883Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100993579134993788Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2101112449135112609Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2101112449135112609Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2101112449135112609Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102800000160100000Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103265371129371085Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103265371167370436Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106391660140391809Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:350
Count of miRNA genes:250
Interacting mature miRNAs:286
Transcripts:ENSMUST00000028533
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000028533   ⟹   ENSMUSP00000028533
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl2107,056,140 - 107,059,656 (-)Ensembl
RefSeq Acc Id: NM_008045   ⟹   NP_032071
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392106,886,331 - 106,889,996 (-)NCBI
GRCm382107,055,986 - 107,059,651 (-)NCBI
MGSCv372106,896,297 - 106,899,808 (-)RGD
Celera2108,277,790 - 108,281,303 (-)RGD
cM Map2 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_032071 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA92804 (Get FASTA)   NCBI Sequence Viewer  
  AAH61159 (Get FASTA)   NCBI Sequence Viewer  
  BAB30827 (Get FASTA)   NCBI Sequence Viewer  
  EDL27773 (Get FASTA)   NCBI Sequence Viewer  
  Q60687 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_032071   ⟸   NM_008045
- Peptide Label: precursor
- UniProtKB: Q60687 (UniProtKB/Swiss-Prot),   A0A0F7RQR1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000028533   ⟸   ENSMUST00000028533

Promoters
RGD ID:6878160
Promoter ID:EPDNEW_M2530
Type:single initiation site
Name:Fshb_1
Description:Mus musculus follicle stimulating hormone beta , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382107,059,651 - 107,059,711EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95582 AgrOrtholog
Ensembl Genes ENSMUSG00000027120 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000028533 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000028533 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 2.10.90.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Glyco_hormone_CN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gonadotropin_bsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gonadotropin_bsu_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14308 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95582 ENTREZGENE
NCBI Gene 14308 ENTREZGENE
PANTHER PTHR11515 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Cys_knot UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fshb PhenoGen
PROSITE GLYCO_HORMONE_BETA_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GLYCO_HORMONE_BETA_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GHB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0F7RQR1 ENTREZGENE, UniProtKB/TrEMBL
  FSHB_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE