Fgf9 (fibroblast growth factor 9) - Rat Genome Database
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Gene: Fgf9 (fibroblast growth factor 9) Mus musculus
Analyze
Symbol: Fgf9
Name: fibroblast growth factor 9
RGD ID: 10579
MGI Page MGI
Description: Predicted to have fibroblast growth factor receptor binding activity and growth factor activity. Involved in several processes, including animal organ development; positive regulation of cell population proliferation; and positive regulation of signal transduction. Predicted to localize to basement membrane; cytoplasm; and extracellular space. Is expressed in several structures, including alimentary system; central nervous system; cranium; genitourinary system; and sensory organ. Used to study lung cancer; multiple synostoses syndrome; and pleuropulmonary blastoma. Human ortholog(s) of this gene implicated in multiple synostoses syndrome. Orthologous to human FGF9 (fibroblast growth factor 9); PARTICIPATES IN fibroblast growth factor signaling pathway; melanoma pathway; mitogen activated protein kinase signaling pathway; INTERACTS WITH 1,1-dichloroethene; 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ek; Eks; elbow knee synostosis; FGF-9; Fgf4b; fibroblast growth factor 4b; GAF; glia activating factor; glia-activating factor; HBGF-9
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391458,308,131 - 58,350,311 (+)NCBIGRCm39mm39
GRCm39 Ensembl1458,308,004 - 58,350,177 (+)Ensembl
GRCm381458,070,671 - 58,112,854 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1458,070,547 - 58,112,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv371458,691,523 - 58,731,557 (+)NCBIGRCm37mm9NCBIm37
MGSCv361457,027,028 - 57,063,760 (+)NCBImm8
Celera1455,871,134 - 55,911,011 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1430.51NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dimethylhydrazine  (EXP)
1-chloro-2,4-dinitrobenzene  (ISO)
15-acetyldeoxynivalenol  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,4,7,8-Pentachlorodibenzofuran  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-amino-2-deoxy-D-glucopyranose  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,3',5-triiodo-L-thyronine  (EXP)
6-propyl-2-thiouracil  (ISO)
8-Br-cAMP  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucosamine  (ISO)
alendronic acid  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (EXP)
Benzo[k]fluoranthene  (ISO)
beta-D-glucosamine  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bucladesine  (ISO)
butanal  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
chlorpyrifos  (EXP,ISO)
chromium(6+)  (EXP)
chrysene  (EXP)
cisplatin  (ISO)
colforsin daropate hydrochloride  (ISO)
dextran sulfate  (EXP)
diazinon  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (EXP)
dieldrin  (ISO)
dimethylarsinic acid  (ISO)
divanadium pentaoxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (EXP)
entinostat  (ISO)
fenvalerate  (ISO)
fulvestrant  (EXP,ISO)
irinotecan  (ISO)
isopentenyl diphosphate  (ISO)
lipopolysaccharide  (EXP,ISO)
melatonin  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
neocuproine  (EXP)
nitrofen  (ISO)
ozone  (EXP)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
potassium dichromate  (EXP)
pregnenolone  (ISO)
progesterone  (EXP,ISO)
Ptaquiloside  (EXP)
raloxifene  (ISO)
SB 431542  (ISO)
Soman  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (ISO)
tetraphene  (ISO)
titanium dioxide  (EXP)
torcetrapib  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trilostane  (ISO)
triptonide  (EXP)
tunicamycin  (ISO)
valproic acid  (ISO)
vancomycin  (EXP)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
angiogenesis  (IDA,IMP)
animal organ morphogenesis  (IBA)
cardiac left ventricle morphogenesis  (TAS)
cardiac ventricle development  (TAS)
cell differentiation  (IBA)
cell-cell signaling  (IMP)
chondrocyte differentiation  (IGI,IMP)
embryonic digestive tract development  (IMP)
embryonic limb morphogenesis  (IMP)
embryonic skeletal system development  (IMP)
eye development  (IMP)
fibroblast growth factor receptor signaling pathway  (IBA,IGI,IMP,ISO)
inner ear morphogenesis  (IMP)
lung development  (IBA,IDA,IMP)
lung-associated mesenchyme development  (IMP)
male gonad development  (IMP,ISO)
male sex determination  (IGI,IMP)
multicellular organism development  (IEA)
negative regulation of transcription by RNA polymerase II  (IMP)
negative regulation of vascular associated smooth muscle cell differentiation involved in phenotypic switching  (ISO)
negative regulation of Wnt signaling pathway  (IGI)
osteoblast differentiation  (IMP)
positive regulation of activin receptor signaling pathway  (IDA)
positive regulation of canonical Wnt signaling pathway  (IMP)
positive regulation of cardiac muscle cell proliferation  (IGI,IMP,TAS)
positive regulation of cell division  (IEA)
positive regulation of cell population proliferation  (IBA,IDA,IMP,ISO)
positive regulation of epithelial cell proliferation  (IBA,IDA,IMP)
positive regulation of gene expression  (IBA,IDA,ISO)
positive regulation of MAPK cascade  (ISO)
positive regulation of mesenchymal cell proliferation  (IDA,IMP)
positive regulation of protein phosphorylation  (IBA)
positive regulation of smoothened signaling pathway  (IDA,IMP)
positive regulation of transcription, DNA-templated  (TAS)
positive regulation of vascular associated smooth muscle cell migration  (ISO)
positive regulation of vascular associated smooth muscle cell proliferation  (ISO)
positive regulation of vascular endothelial growth factor receptor signaling pathway  (IMP)
protein import into nucleus  (IMP)
regulation of cell migration  (IBA)
regulation of timing of cell differentiation  (IMP)
substantia nigra development  (ISO)
vasculogenesis involved in coronary vascular morphogenesis  (TAS)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal body wall morphology  (IEA)
abnormal branching involved in lung morphogenesis  (IAGP)
abnormal cartilage development  (IAGP)
abnormal cecum morphology  (IAGP)
abnormal coccyx morphology  (IAGP)
abnormal cochlea morphology  (IAGP)
abnormal digestive system physiology  (IAGP)
abnormal embryo size  (IEA)
abnormal fetal cardiomyocyte proliferation  (IAGP)
abnormal heart development  (IAGP)
abnormal humerus morphology  (IAGP)
abnormal incisor morphology  (IAGP)
abnormal intervertebral disk morphology  (IAGP)
abnormal joint morphology  (IAGP)
abnormal knee joint morphology  (IAGP)
abnormal lens development  (IAGP)
abnormal Leydig cell differentiation  (IAGP)
abnormal limb development  (IAGP)
abnormal long bone morphology  (IAGP)
abnormal lung morphology  (IAGP)
abnormal lung-associated mesenchyme development  (IAGP)
abnormal mesenchymal cell proliferation involved in lung development  (IAGP)
abnormal motor learning  (IEA)
abnormal primary sex determination  (IAGP)
abnormal radius morphology  (IAGP)
abnormal retinal vasculature morphology  (IEA)
abnormal Sertoli cell development  (IAGP)
abnormal small intestine crypts of Lieberkuhn morphology  (IAGP)
abnormal small intestine morphology  (IAGP)
abnormal sternum morphology  (IAGP)
abnormal suckling behavior  (IAGP)
abnormal temporal bone morphology  (IAGP)
abnormal testis cord formation  (IAGP)
abnormal testis morphology  (IAGP)
abnormal tooth development  (IAGP)
abnormal tympanic ring morphology  (IAGP)
abnormal vertebral arch morphology  (IAGP)
abnormal vision  (IAGP)
abnormal voluntary movement  (IAGP)
calcified joint  (IAGP)
cataract  (IAGP)
caudal vertebral fusion  (IAGP)
cleft palate  (IAGP)
cleft secondary palate  (IAGP)
curly tail  (IAGP)
cyanosis  (IAGP)
decreased fetal weight  (IAGP)
decreased lung weight  (IAGP)
decreased number of peritubular myoid cells  (IAGP)
delayed bone ossification  (IAGP)
dilated heart atrium  (IAGP)
dilated heart left ventricle  (IAGP)
dilated heart right ventricle  (IAGP)
dilated heart ventricle  (IAGP)
disorganized testis cords  (IAGP)
enlarged heart  (IEA)
enlarged heart atrium  (IAGP)
enlarged Meckel's cartilage  (IAGP)
epididymis hypoplasia  (IAGP)
exophthalmos  (IAGP)
fused joints  (IAGP)
fusion of vertebral arches  (IAGP)
heart hypoplasia  (IAGP)
high forehead  (IAGP)
hyperactivity  (IEA)
hypopnea  (IAGP)
hypoxia  (IAGP)
impaired hearing  (IAGP)
increased bone ossification  (IAGP)
increased chondrocyte number  (IAGP)
increased diameter of femur  (IAGP)
increased diameter of fibula  (IAGP)
increased diameter of humerus  (IAGP)
increased diameter of radius  (IAGP)
increased diameter of tibia  (IAGP)
increased diameter of ulna  (IAGP)
increased eye anterior chamber depth  (IAGP)
increased grip strength  (IEA)
increased mean corpuscular hemoglobin  (IEA)
increased or absent threshold for auditory brainstem response  (IAGP)
increased startle reflex  (IEA)
kinked tail  (IAGP)
lethality at weaning, incomplete penetrance  (IAGP)
midface hypoplasia  (IAGP)
misaligned incisors  (IAGP)
neonatal lethality, complete penetrance  (IAGP)
no abnormal phenotype detected  (IAGP)
ocular hypertelorism  (IAGP)
ovotestis  (IAGP)
pallor  (IAGP)
perinatal lethality, complete penetrance  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature coronal suture closure  (IAGP)
premature sagittal suture closure  (IAGP)
preweaning lethality, complete penetrance  (IEA)
primary sex reversal  (IAGP)
pulmonary hypoplasia  (IAGP)
respiratory distress  (IAGP)
respiratory failure  (IAGP)
respiratory system phenotype  (IEA)
short femur  (IAGP)
short fibula  (IAGP)
short humerus  (IAGP)
short limbs  (IAGP)
short nasal bone  (IAGP)
short premaxilla  (IAGP)
short radius  (IAGP)
short sternum  (IAGP)
short tail  (IAGP)
short tibia  (IAGP)
short ulna  (IAGP)
shortened RR interval  (IEA)
small lens  (IAGP)
small lung  (IAGP)
synostosis  (IAGP)
testis hypoplasia  (IAGP)
vertebral fusion  (IAGP)
wide ribs  (IAGP)
References

Additional References at PubMed
PMID:7656983   PMID:8321227   PMID:8576175   PMID:8585128   PMID:8619924   PMID:8619928   PMID:8883961   PMID:8889548   PMID:8901049   PMID:9250873   PMID:9385055   PMID:9477322  
PMID:9520113   PMID:9847236   PMID:10098408   PMID:10349636   PMID:10474167   PMID:10518547   PMID:10571691   PMID:10769235   PMID:10802662   PMID:10932192   PMID:10976045   PMID:11042159  
PMID:11076861   PMID:11101846   PMID:11165488   PMID:11217851   PMID:11287183   PMID:11290325   PMID:11493531   PMID:11747081   PMID:11748141   PMID:11900978   PMID:12051813   PMID:12140681  
PMID:12152071   PMID:12399319   PMID:12477932   PMID:12591596   PMID:12666204   PMID:12781691   PMID:14517998   PMID:14681479   PMID:15071597   PMID:15108315   PMID:15201220   PMID:15201225  
PMID:15211353   PMID:15229180   PMID:15255957   PMID:15260994   PMID:15328018   PMID:15329346   PMID:15340846   PMID:15470636   PMID:15533830   PMID:15621532   PMID:15944199   PMID:15963767  
PMID:16123981   PMID:16141072   PMID:16141073   PMID:16151852   PMID:16185683   PMID:16308329   PMID:16494859   PMID:16495310   PMID:16496342   PMID:16504022   PMID:16524929   PMID:16537572  
PMID:16540513   PMID:16540514   PMID:16602821   PMID:16675530   PMID:16700629   PMID:16778080   PMID:16818445   PMID:17090159   PMID:17141159   PMID:17192470   PMID:17196193   PMID:17544391  
PMID:17576930   PMID:17881491   PMID:18058912   PMID:18077585   PMID:18079413   PMID:18155190   PMID:18231602   PMID:18250098   PMID:18270576   PMID:18287559   PMID:18367557   PMID:18391535  
PMID:18403409   PMID:18449196   PMID:18508041   PMID:18533146   PMID:18653563   PMID:18718461   PMID:18816849   PMID:18818193   PMID:18981061   PMID:19097117   PMID:19124014   PMID:19218784  
PMID:19219044   PMID:19232523   PMID:19411759   PMID:19429785   PMID:19508331   PMID:19544582   PMID:19549635   PMID:19581591   PMID:19686689   PMID:19753101   PMID:19757380   PMID:19782673  
PMID:19838179   PMID:19876815   PMID:19884258   PMID:20040496   PMID:20159962   PMID:20299672   PMID:20348033   PMID:20472108   PMID:20498043   PMID:20547837   PMID:20713518   PMID:20833365  
PMID:20934536   PMID:20965161   PMID:21087601   PMID:21115610   PMID:21138976   PMID:21223962   PMID:21255566   PMID:21262993   PMID:21350014   PMID:21402782   PMID:21466799   PMID:21515253  
PMID:21654186   PMID:21655085   PMID:21677750   PMID:21750028   PMID:21764747   PMID:21858205   PMID:21862563   PMID:21873635   PMID:21876757   PMID:21898689   PMID:21905163   PMID:21982646  
PMID:21991325   PMID:22123828   PMID:22629441   PMID:22682244   PMID:22698282   PMID:22705479   PMID:22819677   PMID:22898778   PMID:23023706   PMID:23034635   PMID:23095882   PMID:23102581  
PMID:23226461   PMID:23274689   PMID:23300479   PMID:23322300   PMID:23449471   PMID:23523683   PMID:23630450   PMID:23633963   PMID:23727932   PMID:23812634   PMID:23867472   PMID:23987514  
PMID:24145799   PMID:24194600   PMID:24198358   PMID:24440154   PMID:24576537   PMID:24983448   PMID:25053427   PMID:25142465   PMID:25196150   PMID:25327963   PMID:25344072   PMID:25413587  
PMID:25428587   PMID:25624266   PMID:25768089   PMID:25907862   PMID:25915623   PMID:25978641   PMID:26157349   PMID:26235626   PMID:26321050   PMID:26329601   PMID:26450967   PMID:26450968  
PMID:26453795   PMID:26487719   PMID:26634297   PMID:26661618   PMID:26682010   PMID:26748348   PMID:26794256   PMID:26826126   PMID:26916220   PMID:26984772   PMID:27078042   PMID:27141870  
PMID:27269204   PMID:27348588   PMID:27626380   PMID:27633990   PMID:27913639   PMID:28107452   PMID:28118982   PMID:28169396   PMID:28189801   PMID:28378742   PMID:28395336   PMID:28527696  
PMID:28619823   PMID:28675425   PMID:28687623   PMID:28695538   PMID:28848153   PMID:28859094   PMID:28938467   PMID:29028795   PMID:29031500   PMID:29107558   PMID:29791855   PMID:29953642  
PMID:30040984   PMID:30067986   PMID:30285093   PMID:30391672   PMID:30819894   PMID:31028279   PMID:31220553   PMID:31291246   PMID:31699800   PMID:31712577   PMID:31776260   PMID:32002646  
PMID:32127497   PMID:32184391   PMID:32274496   PMID:32452519   PMID:32493750   PMID:32504627   PMID:33080014   PMID:33158935  


Genomics

Comparative Map Data
Fgf9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391458,308,131 - 58,350,311 (+)NCBIGRCm39mm39
GRCm39 Ensembl1458,308,004 - 58,350,177 (+)Ensembl
GRCm381458,070,671 - 58,112,854 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1458,070,547 - 58,112,720 (+)EnsemblGRCm38mm10GRCm38
MGSCv371458,691,523 - 58,731,557 (+)NCBIGRCm37mm9NCBIm37
MGSCv361457,027,028 - 57,063,760 (+)NCBImm8
Celera1455,871,134 - 55,911,011 (+)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1430.51NCBI
FGF9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1321,671,073 - 21,704,498 (+)EnsemblGRCh38hg38GRCh38
GRCh381321,671,073 - 21,704,501 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371322,245,212 - 22,278,637 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361321,143,875 - 21,174,187 (+)NCBINCBI36hg18NCBI36
Build 341321,143,874 - 21,174,184NCBI
Celera133,307,609 - 3,341,037 (+)NCBI
Cytogenetic Map13q12.11NCBI
HuRef133,046,835 - 3,080,256 (+)NCBIHuRef
CHM1_11322,213,000 - 22,246,423 (+)NCBICHM1_1
Fgf9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21532,208,993 - 32,254,952 (+)NCBI
Rnor_6.0 Ensembl1538,341,089 - 38,387,316 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01538,341,657 - 38,386,945 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01542,177,371 - 42,217,450 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41537,115,068 - 37,155,652 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11537,130,767 - 37,171,321 (+)NCBI
Celera1531,921,635 - 31,961,962 (+)NCBICelera
Cytogenetic Map15p12NCBI
Fgf9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554972,199,409 - 2,235,893 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554972,199,424 - 2,232,088 (+)NCBIChiLan1.0ChiLan1.0
FGF9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11321,273,333 - 21,307,198 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1321,273,333 - 21,307,198 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0132,967,713 - 3,000,554 (+)NCBIMhudiblu_PPA_v0panPan3
FGF9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12516,630,321 - 16,665,935 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2516,632,812 - 16,663,550 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2516,728,400 - 16,763,892 (-)NCBI
ROS_Cfam_1.02516,767,716 - 16,803,279 (-)NCBI
UMICH_Zoey_3.12516,642,693 - 16,678,281 (-)NCBI
UNSW_CanFamBas_1.02516,653,564 - 16,689,105 (-)NCBI
UU_Cfam_GSD_1.02516,710,104 - 16,745,663 (-)NCBI
Fgf9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945118,734,717 - 118,769,086 (-)NCBI
SpeTri2.0NW_004936720282,291 - 316,629 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FGF9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl111,554,763 - 1,582,408 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1111,554,648 - 1,581,938 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.211693,995 - 718,579 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FGF9
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.131,779,126 - 1,811,427 (+)NCBI
ChlSab1.1 Ensembl31,779,192 - 1,812,784 (+)Ensembl
Fgf9
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477616,022,118 - 16,055,413 (-)NCBI

Position Markers
Fgf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371458,728,358 - 58,728,482UniSTSGRCm37
MGSCv371458,691,893 - 58,692,085UniSTSGRCm37
Celera1455,871,504 - 55,871,696UniSTS
Celera1455,907,812 - 55,907,936UniSTS
Cytogenetic Map14DUniSTS
cM Map1421.0UniSTS
cM Map1421.0UniSTS
RH124484  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381458,101,974 - 58,102,161UniSTSGRCm38
MGSCv371458,720,811 - 58,720,998UniSTSGRCm37
Celera1455,900,265 - 55,900,452UniSTS
Cytogenetic Map14DUniSTS
cM Map1421.0UniSTS
RH78332  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381458,109,942 - 58,110,109UniSTSGRCm38
MGSCv371458,728,779 - 58,728,946UniSTSGRCm37
Celera1455,908,233 - 55,908,400UniSTS
Cytogenetic Map14DUniSTS
cM Map1421.0UniSTS
Fgf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14DUniSTS
Fgf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381458,109,521 - 58,109,645UniSTSGRCm38
MGSCv371458,728,358 - 58,728,482UniSTSGRCm37
Celera1455,907,812 - 55,907,936UniSTS
Cytogenetic Map14DUniSTS
cM Map1421.0UniSTS
Fgf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14DUniSTS
Fgf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381458,073,056 - 58,073,248UniSTSGRCm38
MGSCv371458,691,893 - 58,692,085UniSTSGRCm37
Celera1455,871,504 - 55,871,696UniSTS
Cytogenetic Map14DUniSTS
Fgf9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map14DUniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357589Kdnw2_mkidney weight 2 (mouse)Not determined1420837405121032392Mouse
1357527Epfpq1_mepididymal fat percentage QTL 1 (mouse)Not determined142101238271648361Mouse
13506929Recrq10_mrecombination rate in male meiosis QTL 10 (mouse)142820000060900000Mouse
10043886Cia49_mcollagen induced arthritis QTL 49 (mouse)Not determined142975953763759676Mouse
1300998Cia17_mcollagen induced arthritis 17 (mouse)Not determined143009779364097924Mouse
1300909Ath13_matherosclerosis 13 (mouse)Not determined143009779364097924Mouse
27226774Tibl15_mtibia length 15, 10 week (mouse)143060000087700000Mouse
27226737Metcl12_mmetatarsal-calcaneal length 12, 10 week (mouse)143350000059200000Mouse
1300625Cosz2_mcocaine seizure 2 (mouse)Not determined143532384068548287Mouse
10043887Cia50_mcollagen induced arthritis QTL 50 (mouse)Not determined143719272871192863Mouse
4142419Tgq26_mtriglyceride QTL 26 (mouse)Not determined4009986274099862Mouse
1301777Bglq15_mbody growth late QTL 15 (mouse)Not determined144272496776725144Mouse
1301424Skull21_mskull morphology 21 (mouse)Not determined144272496776725144Mouse
1300805Mors3_mmodifier of obesity related sterility 3 (mouse)Not determined144279982176799969Mouse
4141400Nilac8_mnicotine induced locomotor activity 8 (mouse)Not determined144282839876828596Mouse
1301091Bbaa21_mB.burgdorferi-associated arthritis 21 (mouse)Not determined144282839876828596Mouse
4141484Hcbip1_mhexachlorobenzene induced porphyria 1 (mouse)Not determined4709779359725144Mouse
1300605El5_mepilepsy 5 (mouse)Not determined144921797683218107Mouse
4142364Pbwg18_mpostnatal body weight growth 18 (mouse)Not determined145204453586044676Mouse
1301489Lbm10_mlean body mass 10 (mouse)Not determined145352385687524089Mouse
12880432Fgf23lq3_mFGF23 serum level QTL 3 (mouse)145370000087700000Mouse
10043889Cia52_mcollagen induced arthritis QTL 52 (mouse)Not determined145584494189845069Mouse
1301562Hwq1_mheart weight quantitative locus 1 (mouse)Not determined145630930590309501Mouse
1357565wrmod1_mwobbler modifier 1 (mouse)Not determined1457942183101622037Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1234
Count of miRNA genes:501
Interacting mature miRNAs:623
Transcripts:ENSMUST00000022545, ENSMUST00000074654, ENSMUST00000165526, ENSMUST00000166770
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006518554 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH008071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI414273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK041815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079617 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125237 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX512213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D38258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HM988990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LR130356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S82023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U33535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000022545   ⟹   ENSMUSP00000022545
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1458,072,686 - 58,110,174 (+)Ensembl
RefSeq Acc Id: ENSMUST00000074654   ⟹   ENSMUSP00000088143
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1458,075,115 - 58,110,174 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165526   ⟹   ENSMUSP00000131358
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1458,070,547 - 58,112,720 (+)Ensembl
RefSeq Acc Id: ENSMUST00000166770   ⟹   ENSMUSP00000130066
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1458,076,507 - 58,109,392 (+)Ensembl
RefSeq Acc Id: NM_013518   ⟹   NP_038546
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391458,310,143 - 58,350,177 (+)NCBI
GRCm381458,072,686 - 58,112,720 (+)NCBI
MGSCv371458,691,523 - 58,731,557 (+)RGD
Celera1455,871,134 - 55,911,011 (+)RGD
cM Map14 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006518554   ⟹   XP_006518617
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391458,312,978 - 58,350,311 (+)NCBI
GRCm381458,075,520 - 58,112,854 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247647   ⟹   XP_030103507
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391458,308,131 - 58,350,311 (+)NCBI
GRCm381458,070,671 - 58,112,854 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247648   ⟹   XP_030103508
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391458,308,499 - 58,350,311 (+)NCBI
GRCm381458,071,041 - 58,112,854 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038546   ⟸   NM_013518
- UniProtKB: P54130 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006518617   ⟸   XM_006518554
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_030103507   ⟸   XM_030247647
- Peptide Label: isoform X1
RefSeq Acc Id: XP_030103508   ⟸   XM_030247648
- Peptide Label: isoform X2
RefSeq Acc Id: ENSMUSP00000088143   ⟸   ENSMUST00000074654
RefSeq Acc Id: ENSMUSP00000130066   ⟸   ENSMUST00000166770
RefSeq Acc Id: ENSMUSP00000131358   ⟸   ENSMUST00000165526
RefSeq Acc Id: ENSMUSP00000022545   ⟸   ENSMUST00000022545

Promoters
RGD ID:8682578
Promoter ID:EPDNEW_M19319
Type:initiation region
Name:Fgf9_1
Description:Mus musculus fibroblast growth factor 9 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381458,075,073 - 58,075,133EPDNEW
RGD ID:6847099
Promoter ID:MM_ACW:16186
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:FGF9.DSEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361458,689,266 - 58,689,766 (+)MPROMDB
RGD ID:6824936
Promoter ID:MM_KWN:17075
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:NM_013518
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361458,690,921 - 58,692,097 (+)MPROMDB
RGD ID:6824938
Promoter ID:MM_KWN:17076
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney,   Lung
Transcripts:UC007UDY.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361458,693,506 - 58,694,006 (+)MPROMDB
RGD ID:6847100
Promoter ID:MM_ACW:16187
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Kidney
Transcripts:FGF9.ESEP07
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361458,694,666 - 58,695,422 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104723 AgrOrtholog
Ensembl Genes ENSMUSG00000021974 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000022545 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000088143 UniProtKB/TrEMBL
  ENSMUSP00000130066 UniProtKB/TrEMBL
  ENSMUSP00000131358 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000022545 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000074654 UniProtKB/TrEMBL
  ENSMUST00000165526 UniProtKB/TrEMBL
  ENSMUST00000166770 UniProtKB/TrEMBL
InterPro FGF9 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Fibroblast_GF_fam UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IL1/FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14180 UniProtKB/Swiss-Prot
MGD MGI:104723 ENTREZGENE
NCBI Gene 14180 ENTREZGENE
PANTHER PTHR11486 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11486:SF28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB FGF9 RGD
PhenoGen Fgf9 PhenoGen
PRINTS HBGFFGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE HBGF_FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART FGF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50353 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt E1APJ6_MOUSE UniProtKB/TrEMBL
  E9Q2N2_MOUSE UniProtKB/TrEMBL
  E9Q864_MOUSE UniProtKB/TrEMBL
  FGF9_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TPG0_MOUSE UniProtKB/TrEMBL
  Q3TYJ7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q499I9 UniProtKB/Swiss-Prot