Fancc (Fanconi anemia, complementation group C) - Rat Genome Database

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Gene: Fancc (Fanconi anemia, complementation group C) Mus musculus
Analyze
Symbol: Fancc
Name: Fanconi anemia, complementation group C
RGD ID: 10566
MGI Page MGI
Description: Acts upstream of or within several processes, including brain morphogenesis; neuronal stem cell population maintenance; and removal of superoxide radicals. Predicted to be located in cytosol. Predicted to be part of Fanconi anaemia nuclear complex and chromatin. Is expressed in several structures, including central nervous system; embryo mesenchyme; gonad; retina nuclear layer; and skeleton. Used to study Fanconi anemia complementation group A and Fanconi anemia complementation group C. Human ortholog(s) of this gene implicated in several diseases, including Fanconi anemia (multiple); acute myeloid leukemia; aspirin-induced respiratory disease; pancreatic cancer; and pancytopenia. Orthologous to human FANCC (FA complementation group C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BB116513; Fac; Facc; Fanconi anemia group C protein homolog; mir-3074-1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391363,452,519 - 63,645,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1363,432,857 - 63,645,092 (-)EnsemblGRCm39 Ensembl
GRCm381363,301,334 - 63,497,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1363,285,043 - 63,497,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv371363,406,017 - 63,533,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361363,320,977 - 63,440,947 (-)NCBIMGSCv36mm8
Celera1364,958,890 - 65,084,928 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1332.8NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (EXP)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
asbestos  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bisphenol A  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
CGP 52608  (ISO)
chlorambucil  (ISO)
cisplatin  (EXP,ISO)
cypermethrin  (EXP)
decabromodiphenyl ether  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
diclofenac  (ISO)
epoxiconazole  (EXP)
formaldehyde  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
lipopolysaccharide  (EXP)
lycopene  (ISO)
melphalan  (ISO)
methapyrilene  (ISO)
N-ethyl-N-nitrosourea  (EXP)
ochratoxin A  (ISO)
ozone  (EXP)
paracetamol  (ISO)
pentachlorophenol  (EXP)
phosphoramide mustard  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (ISO)
riddelliine  (ISO)
rotenone  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (EXP)
sunitinib  (ISO)
tamoxifen  (EXP)
temozolomide  (ISO)
testosterone  (ISO)
testosterone enanthate  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (ISO)
triptonide  (EXP)
trovafloxacin  (EXP)
valproic acid  (ISO)
vorinostat  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal bone marrow cell morphology/development  (IAGP)
abnormal bone marrow morphology  (IAGP)
abnormal cell cycle checkpoint function  (IAGP)
abnormal cell physiology  (IAGP)
abnormal common lymphocyte progenitor cell morphology  (IAGP)
abnormal fertility/fecundity  (IAGP)
abnormal hematopoietic stem cell physiology  (IAGP)
abnormal hematopoietic system physiology  (IAGP)
abnormal hepatocyte physiology  (IAGP)
abnormal lymphocyte morphology  (IAGP)
abnormal ovary morphology  (IAGP)
abnormal reproductive system morphology  (IAGP)
abnormal seminiferous tubule morphology  (IAGP)
absent common myeloid progenitor cells  (IAGP)
absent corpus luteum  (IAGP)
absent ovarian follicles  (IAGP)
arrest of spermatogenesis  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased common myeloid progenitor cell number  (IAGP)
decreased erythrocyte cell number  (IAGP)
decreased germ cell number  (IAGP)
decreased hemoglobin content  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased litter size  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased neutrophil cell number  (IAGP)
decreased oocyte number  (IAGP)
decreased telomere length  (IAGP)
decreased testis weight  (IAGP)
female infertility  (IAGP)
impaired ovarian folliculogenesis  (IAGP)
increased cellular sensitivity to methylmethanesulfonate  (IAGP)
increased mean corpuscular volume  (IAGP)
induced chromosome breakage  (IAGP)
male infertility  (IAGP)
microvesicular hepatic steatosis  (IAGP)
oligozoospermia  (IAGP)
ovary hypoplasia  (IAGP)
pale liver  (IAGP)
polychromatophilia  (IAGP)
reduced female fertility  (IAGP)
reduced fertility  (IAGP)
seminiferous tubule degeneration  (IAGP)
small ovary  (IAGP)
spontaneous chromosome breakage  (IAGP)
testicular atrophy  (IAGP)
thrombocytopenia  (IAGP)
uterus hypoplasia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Constitutional sequence variation in the Fanconi anaemia group C (FANCC) gene in childhood acute myeloid leukaemia. Barber LM, etal., Br J Haematol. 2003 Apr;121(1):57-62.
2. Bone marrow failure in the Fanconi anemia group C mouse model after DNA damage. Carreau M, etal., Blood. 1998 Apr 15;91(8):2737-44.
3. Inactivation of Fac in mice produces inducible chromosomal instability and reduced fertility reminiscent of Fanconi anaemia. Chen M, etal., Nat Genet 1996 Apr;12(4):448-51.
4. Germ line Fanconi anemia complementation group C mutations and pancreatic cancer. Couch FJ, etal., Cancer Res. 2005 Jan 15;65(2):383-6.
5. Association of complementation group and mutation type with clinical outcome in fanconi anemia. European Fanconi Anemia Research Group. Faivre L, etal., Blood. 2000 Dec 15;96(13):4064-70.
6. Phenotypic correction of Fanconi anemia group C knockout mice. Gush KA, etal., Blood. 2000 Jan 15;95(2):700-4.
7. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
8. Association of FANCC polymorphisms with FEV1 decline in aspirin exacerbated respiratory disease. Kim JH, etal., Mol Biol Rep. 2012 Mar;39(3):2385-94. doi: 10.1007/s11033-011-0989-6. Epub 2011 Jun 14.
9. Fanconi anemia links reactive oxygen species to insulin resistance and obesity. Li J, etal., Antioxid Redox Signal. 2012 Oct 15;17(8):1083-98. doi: 10.1089/ars.2011.4417. Epub 2012 Jun 25.
10. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
11. MGDs mouse GO annotations MGD data from the GO Consortium
12. MGD IEA MGD IEA
13. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
14. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
15. Mouse MP Annotation Import Pipeline RGD automated import pipeline
16. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
18. Inflammatory reactive oxygen species-mediated hemopoietic suppression in Fancc-deficient mice. Sejas DP, etal., J Immunol. 2007 Apr 15;178(8):5277-87.
19. Exome sequencing identifies rare deleterious mutations in DNA repair genes FANCC and BLM as potential breast cancer susceptibility alleles. Thompson ER, etal., PLoS Genet. 2012 Sep;8(9):e1002894. doi: 10.1371/journal.pgen.1002894. Epub 2012 Sep 27.
20. In vivo therapeutic responses contingent on Fanconi anemia/BRCA2 status of the tumor. van der Heijden MS, etal., Clin Cancer Res. 2005 Oct 15;11(20):7508-15.
21. Germ cell defects and hematopoietic hypersensitivity to gamma-interferon in mice with a targeted disruption of the Fanconi anemia C gene. Whitney MA, etal., Blood 1996 Jul 1;88(1):49-58.
22. Downregulation of Fanconi anemia genes in sporadic head and neck squamous cell carcinoma. Wreesmann VB, etal., ORL J Otorhinolaryngol Relat Spec. 2007;69(4):218-25. Epub 2007 Apr 4.
23. Novel inactivating mutations of FANCC in Brazilian patients with Fanconi anemia. Yates J, etal., Hum Mutat. 2006 Feb;27(2):214.
Additional References at PubMed
PMID:1303234   PMID:7689006   PMID:7690622   PMID:7774911   PMID:8575786   PMID:8647801   PMID:8789444   PMID:8889548   PMID:9582020   PMID:9596654   PMID:9787138   PMID:10082135  
PMID:10349636   PMID:10477746   PMID:10526153   PMID:10721717   PMID:10848598   PMID:10951504   PMID:11042159   PMID:11076861   PMID:11433346   PMID:11493445   PMID:11829493   PMID:12135664  
PMID:12360237   PMID:12477932   PMID:12520002   PMID:12763929   PMID:12855557   PMID:14610273   PMID:14764578   PMID:15113761   PMID:15226823   PMID:15356134   PMID:15377654   PMID:15644418  
PMID:15769896   PMID:15782199   PMID:15970507   PMID:16109778   PMID:16141072   PMID:16141073   PMID:16859999   PMID:16919269   PMID:16946306   PMID:17405815   PMID:17960249   PMID:18279715  
PMID:18475298   PMID:18495331   PMID:18684868   PMID:18799693   PMID:19168785   PMID:19270262   PMID:19850743   PMID:20022886   PMID:20360068   PMID:20554974   PMID:20606166   PMID:20826722  
PMID:21037258   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22106009   PMID:22234699   PMID:22371882   PMID:22653977   PMID:23303816   PMID:23315168   PMID:23643835   PMID:23838005  
PMID:23925293   PMID:24005041   PMID:24046015   PMID:24483844   PMID:24589582   PMID:25056314   PMID:25917546   PMID:26123487   PMID:26366677   PMID:26676373   PMID:26860989   PMID:26895835  
PMID:26916217   PMID:27133164   PMID:27507053   PMID:27568523   PMID:27760317   PMID:28341737   PMID:29377497   PMID:29427417   PMID:29989666   PMID:30213274   PMID:30977208   PMID:32896825  
PMID:33073500   PMID:35703178  


Genomics

Comparative Map Data
Fancc
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391363,452,519 - 63,645,126 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1363,432,857 - 63,645,092 (-)EnsemblGRCm39 Ensembl
GRCm381363,301,334 - 63,497,292 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1363,285,043 - 63,497,278 (-)EnsemblGRCm38mm10GRCm38
MGSCv371363,406,017 - 63,533,053 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361363,320,977 - 63,440,947 (-)NCBIMGSCv36mm8
Celera1364,958,890 - 65,084,928 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1332.8NCBI
FANCC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38995,099,054 - 95,317,709 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl995,099,054 - 95,426,796 (-)EnsemblGRCh38hg38GRCh38
GRCh37997,861,336 - 98,079,991 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36996,901,157 - 97,119,812 (-)NCBINCBI36Build 36hg18NCBI36
Build 34994,940,890 - 95,159,546NCBI
Celera968,302,367 - 68,521,048 (-)NCBICelera
Cytogenetic Map9q22.32NCBI
HuRef967,470,857 - 67,689,280 (-)NCBIHuRef
CHM1_1998,007,791 - 98,226,463 (-)NCBICHM1_1
T2T-CHM13v2.09107,268,451 - 107,487,223 (-)NCBIT2T-CHM13v2.0
Fancc
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8171,686,374 - 1,818,672 (+)NCBIGRCr8
mRatBN7.2171,680,660 - 1,822,610 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl171,681,324 - 1,829,376 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx171,700,069 - 1,822,177 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0173,242,667 - 3,364,775 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0171,697,517 - 1,819,627 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.017826,512 - 955,703 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl17833,509 - 955,615 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.017819,325 - 948,712 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4177,254,528 - 7,341,500 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1177,254,527 - 7,341,497 (+)NCBI
Celera17719,268 - 841,089 (-)NCBICelera
RH 3.4 Map175.6RGD
Cytogenetic Map17p14NCBI
Fancc
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542222,032,258 - 22,247,044 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542222,031,825 - 22,246,478 (-)NCBIChiLan1.0ChiLan1.0
FANCC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21144,131,166 - 44,349,651 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1944,133,582 - 44,352,031 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0966,201,581 - 66,418,229 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1994,327,355 - 94,544,772 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl994,329,971 - 94,477,198 (-)Ensemblpanpan1.1panPan2
FANCC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1171,388,931 - 71,678,019 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl171,487,601 - 71,678,506 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha172,151,677 - 72,440,952 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0171,693,614 - 71,983,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl171,788,781 - 71,973,067 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1171,505,368 - 71,794,755 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0171,269,071 - 71,558,824 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0171,975,513 - 72,265,108 (+)NCBIUU_Cfam_GSD_1.0
Fancc
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049444,751,995 - 4,931,679 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366263,982,647 - 4,159,976 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366263,980,311 - 4,147,042 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FANCC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1026,796,572 - 27,061,801 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11026,796,546 - 27,055,271 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21031,282,173 - 31,315,897 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FANCC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112107,780,087 - 107,991,828 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12107,845,135 - 107,991,237 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603896,155,447 - 96,377,196 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fancc
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475316,566,864 - 16,811,438 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Fancc
5808 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2629
Count of miRNA genes:752
Interacting mature miRNAs:969
Transcripts:ENSMUST00000073029, ENSMUST00000099444, ENSMUST00000159024, ENSMUST00000159056, ENSMUST00000160151, ENSMUST00000160166, ENSMUST00000160333, ENSMUST00000160336, ENSMUST00000160617, ENSMUST00000160735, ENSMUST00000160931, ENSMUST00000161507, ENSMUST00000161656, ENSMUST00000161977, ENSMUST00000162375, ENSMUST00000162971, ENSMUST00000163091
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
14746975Manh74_mmandible shape 74 (mouse)135247726986477269Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135382078387820897Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135538498089385140Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55720354112431103Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55720354112431103Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55720354112431103Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55720354112431103Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135647045676971314Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356470456105422186Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135662924996239162Mouse
10412163Wra1_mwheel running activity 1 (mouse)Not determined135913260093132738Mouse

Markers in Region
AW742919  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381363,326,093 - 63,326,372UniSTSGRCm38
MGSCv371363,427,401 - 63,427,680UniSTSGRCm37
Celera1364,980,277 - 64,980,556UniSTS
Cytogenetic Map13B3UniSTS
cM Map1336.0UniSTS
Whitehead/MRC_RH13642.17UniSTS
BB116513  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381363,304,784 - 63,304,928UniSTSGRCm38
MGSCv371363,406,092 - 63,406,236UniSTSGRCm37
Celera1364,958,965 - 64,959,109UniSTS
Cytogenetic Map13B3UniSTS
cM Map1336.0UniSTS
Whitehead/MRC_RH13643.25UniSTS
L08266  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381363,312,357 - 63,312,512UniSTSGRCm38
MGSCv371363,413,665 - 63,413,820UniSTSGRCm37
Celera1364,966,521 - 64,966,676UniSTS
Cytogenetic Map13B3UniSTS
cM Map1336.0UniSTS
Whitehead_YAC13 UniSTS
Fancc  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map13B3UniSTS
cM Map1332.8UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001042673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001282942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001347515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006517090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244478 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244485 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247147 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001780750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003950426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004937940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035488 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK080697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK163161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196042 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV232342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY431920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ058789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ079722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT009757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L08266 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000073029   ⟹   ENSMUSP00000072788
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,452,526 - 63,579,559 (-)Ensembl
GRCm38.p6 Ensembl1363,304,712 - 63,431,745 (-)Ensembl
RefSeq Acc Id: ENSMUST00000099444   ⟹   ENSMUSP00000097043
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,459,949 - 63,579,508 (-)Ensembl
GRCm38.p6 Ensembl1363,312,135 - 63,431,694 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159024   ⟹   ENSMUSP00000124325
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,495,326 - 63,645,092 (-)Ensembl
GRCm38.p6 Ensembl1363,347,512 - 63,497,278 (-)Ensembl
RefSeq Acc Id: ENSMUST00000159056
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,469,113 - 63,479,678 (-)Ensembl
GRCm38.p6 Ensembl1363,321,299 - 63,331,864 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,478,353 - 63,579,559 (-)Ensembl
GRCm38.p6 Ensembl1363,330,539 - 63,431,745 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,459,568 - 63,465,209 (-)Ensembl
GRCm38.p6 Ensembl1363,311,754 - 63,317,395 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160333
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,464,314 - 63,579,536 (-)Ensembl
GRCm38.p6 Ensembl1363,316,500 - 63,431,722 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160336
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,460,310 - 63,472,832 (-)Ensembl
GRCm38.p6 Ensembl1363,312,496 - 63,325,018 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160617   ⟹   ENSMUSP00000123767
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,550,748 - 63,557,582 (-)Ensembl
GRCm38.p6 Ensembl1363,402,934 - 63,409,768 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160735   ⟹   ENSMUSP00000125710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,488,204 - 63,545,981 (-)Ensembl
GRCm38.p6 Ensembl1363,340,390 - 63,398,167 (-)Ensembl
RefSeq Acc Id: ENSMUST00000160931   ⟹   ENSMUSP00000124165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,550,691 - 63,579,497 (-)Ensembl
GRCm38.p6 Ensembl1363,402,877 - 63,431,683 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161507
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,495,296 - 63,546,108 (-)Ensembl
GRCm38.p6 Ensembl1363,347,482 - 63,398,294 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161656
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,478,353 - 63,499,986 (-)Ensembl
GRCm38.p6 Ensembl1363,330,539 - 63,352,172 (-)Ensembl
RefSeq Acc Id: ENSMUST00000161977   ⟹   ENSMUSP00000123817
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,459,353 - 63,579,538 (-)Ensembl
GRCm38.p6 Ensembl1363,311,539 - 63,431,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162375   ⟹   ENSMUSP00000124759
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,495,287 - 63,554,111 (-)Ensembl
GRCm38.p6 Ensembl1363,347,473 - 63,406,297 (-)Ensembl
RefSeq Acc Id: ENSMUST00000162971   ⟹   ENSMUSP00000123972
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,495,236 - 63,579,069 (-)Ensembl
GRCm38.p6 Ensembl1363,347,422 - 63,431,255 (-)Ensembl
RefSeq Acc Id: ENSMUST00000163091   ⟹   ENSMUSP00000124406
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,459,569 - 63,579,539 (-)Ensembl
GRCm38.p6 Ensembl1363,311,755 - 63,431,725 (-)Ensembl
RefSeq Acc Id: ENSMUST00000220684   ⟹   ENSMUSP00000152119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,432,857 - 63,579,538 (-)Ensembl
GRCm38.p6 Ensembl1363,285,043 - 63,431,724 (-)Ensembl
RefSeq Acc Id: ENSMUST00000221054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1363,508,039 - 63,579,476 (-)Ensembl
GRCm38.p6 Ensembl1363,360,225 - 63,431,662 (-)Ensembl
RefSeq Acc Id: NM_001042673   ⟹   NP_001036138
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,452,523 - 63,579,559 (-)NCBI
GRCm381363,304,709 - 63,431,745 (-)NCBI
MGSCv371363,406,017 - 63,533,053 (-)RGD
Celera1364,958,890 - 65,084,928 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001282942   ⟹   NP_001269871
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,351 - 63,579,559 (-)NCBI
GRCm381363,311,537 - 63,431,745 (-)NCBI
Celera1364,958,890 - 65,084,928 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001347514   ⟹   NP_001334443
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,351 - 63,579,559 (-)NCBI
GRCm381363,311,537 - 63,431,745 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001347515   ⟹   NP_001334444
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,351 - 63,579,559 (-)NCBI
GRCm381363,311,537 - 63,431,745 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007985   ⟹   NP_032011
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,351 - 63,579,559 (-)NCBI
GRCm381363,311,537 - 63,431,745 (-)NCBI
MGSCv371363,406,017 - 63,533,053 (-)RGD
Celera1364,958,890 - 65,084,928 (-)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006517087   ⟹   XP_006517150
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,645,126 (-)NCBI
GRCm381363,311,753 - 63,497,292 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006517090   ⟹   XP_006517153
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,141 (-)NCBI
GRCm381363,311,753 - 63,431,364 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244474   ⟹   XP_011242776
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244475   ⟹   XP_011242777
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244476   ⟹   XP_011242778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,452,519 - 63,579,627 (-)NCBI
GRCm381363,301,334 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244477   ⟹   XP_011242779
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244478   ⟹   XP_011242780
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,176 (-)NCBI
GRCm381363,311,753 - 63,431,364 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244480   ⟹   XP_011242782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244481   ⟹   XP_011242783
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244482   ⟹   XP_011242784
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,312,681 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244483   ⟹   XP_011242785
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244484   ⟹   XP_011242786
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011244485   ⟹   XP_011242787
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,345 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017315382   ⟹   XP_017170871
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,406,255 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247144   ⟹   XP_030103004
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,176 (-)NCBI
GRCm381363,311,753 - 63,431,364 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247145   ⟹   XP_030103005
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,176 (-)NCBI
GRCm381363,311,753 - 63,431,364 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247147   ⟹   XP_030103007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030247148   ⟹   XP_030103008
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,518 (-)NCBI
GRCm381363,311,753 - 63,431,706 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157844   ⟹   XP_036013737
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,553,474 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157845   ⟹   XP_036013738
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,553,473 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157846   ⟹   XP_036013739
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,553,466 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157847   ⟹   XP_036013740
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,559 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036157848   ⟹   XP_036013741
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,550,852 (-)NCBI
Sequence:
RefSeq Acc Id: XR_001780750
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,553,572 (-)NCBI
GRCm381363,311,753 - 63,404,501 (-)NCBI
Sequence:
RefSeq Acc Id: XR_003950426
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
GRCm381363,311,753 - 63,431,813 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004937940
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391363,459,567 - 63,579,627 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001036138 (Get FASTA)   NCBI Sequence Viewer  
  NP_001269871 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334443 (Get FASTA)   NCBI Sequence Viewer  
  NP_001334444 (Get FASTA)   NCBI Sequence Viewer  
  NP_032011 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517150 (Get FASTA)   NCBI Sequence Viewer  
  XP_006517153 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242776 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242777 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242778 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242779 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242780 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242782 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242783 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242784 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242785 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242786 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242787 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170871 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103004 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103005 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103007 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103008 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013737 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013738 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013739 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013740 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013741 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA37590 (Get FASTA)   NCBI Sequence Viewer  
  BAC29076 (Get FASTA)   NCBI Sequence Viewer  
  BAE27618 (Get FASTA)   NCBI Sequence Viewer  
  BAE43379 (Get FASTA)   NCBI Sequence Viewer  
  EDL16215 (Get FASTA)   NCBI Sequence Viewer  
  EDL16216 (Get FASTA)   NCBI Sequence Viewer  
  EDL16217 (Get FASTA)   NCBI Sequence Viewer  
  EDL16218 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000072788
  ENSMUSP00000072788.6
  ENSMUSP00000097043
  ENSMUSP00000097043.4
  ENSMUSP00000123767.2
  ENSMUSP00000123817
  ENSMUSP00000123817.2
  ENSMUSP00000123972.2
  ENSMUSP00000124165.2
  ENSMUSP00000124325.3
  ENSMUSP00000124406
  ENSMUSP00000124406.2
  ENSMUSP00000124759.2
  ENSMUSP00000125710.2
  ENSMUSP00000152119.2
GenBank Protein P50652 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_001036138   ⟸   NM_001042673
- Peptide Label: isoform 1
- UniProtKB: Q8CBR3 (UniProtKB/TrEMBL),   Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_032011   ⟸   NM_007985
- Peptide Label: isoform 1
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL),   Q8CBR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001269871   ⟸   NM_001282942
- Peptide Label: isoform 2
- UniProtKB: E9QAE8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517150   ⟸   XM_006517087
- Peptide Label: isoform X3
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006517153   ⟸   XM_006517090
- Peptide Label: isoform X7
- UniProtKB: E9PXX6 (UniProtKB/Swiss-Prot),   P50652 (UniProtKB/Swiss-Prot),   Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242778   ⟸   XM_011244476
- Peptide Label: isoform X4
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242785   ⟸   XM_011244483
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_011242779   ⟸   XM_011244477
- Peptide Label: isoform X5
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242777   ⟸   XM_011244475
- Peptide Label: isoform X2
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242776   ⟸   XM_011244474
- Peptide Label: isoform X1
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242787   ⟸   XM_011244485
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_011242786   ⟸   XM_011244484
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_011242783   ⟸   XM_011244481
- Peptide Label: isoform X8
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242782   ⟸   XM_011244480
- Peptide Label: isoform X6
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242780   ⟸   XM_011244478
- Peptide Label: isoform X5
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011242784   ⟸   XM_011244482
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_017170871   ⟸   XM_017315382
- Peptide Label: isoform X7
- UniProtKB: E9PXX6 (UniProtKB/Swiss-Prot),   P50652 (UniProtKB/Swiss-Prot),   Q3UI88 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001334443   ⟸   NM_001347514
- Peptide Label: isoform 3
- UniProtKB: E9PXX6 (UniProtKB/Swiss-Prot),   P50652 (UniProtKB/Swiss-Prot),   Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001334444   ⟸   NM_001347515
- Peptide Label: isoform 4
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030103007   ⟸   XM_030247147
- Peptide Label: isoform X14
RefSeq Acc Id: XP_030103008   ⟸   XM_030247148
- Peptide Label: isoform X14
RefSeq Acc Id: XP_030103004   ⟸   XM_030247144
- Peptide Label: isoform X5
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030103005   ⟸   XM_030247145
- Peptide Label: isoform X5
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000124325   ⟸   ENSMUST00000159024
RefSeq Acc Id: ENSMUSP00000097043   ⟸   ENSMUST00000099444
RefSeq Acc Id: ENSMUSP00000124406   ⟸   ENSMUST00000163091
RefSeq Acc Id: ENSMUSP00000072788   ⟸   ENSMUST00000073029
RefSeq Acc Id: ENSMUSP00000124165   ⟸   ENSMUST00000160931
RefSeq Acc Id: ENSMUSP00000123767   ⟸   ENSMUST00000160617
RefSeq Acc Id: ENSMUSP00000125710   ⟸   ENSMUST00000160735
RefSeq Acc Id: ENSMUSP00000123972   ⟸   ENSMUST00000162971
RefSeq Acc Id: ENSMUSP00000124759   ⟸   ENSMUST00000162375
RefSeq Acc Id: ENSMUSP00000152119   ⟸   ENSMUST00000220684
RefSeq Acc Id: ENSMUSP00000123817   ⟸   ENSMUST00000161977
RefSeq Acc Id: XP_036013740   ⟸   XM_036157847
- Peptide Label: isoform X10
- UniProtKB: Q8CBR3 (UniProtKB/TrEMBL),   Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013737   ⟸   XM_036157844
- Peptide Label: isoform X5
- UniProtKB: Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013738   ⟸   XM_036157845
- Peptide Label: isoform X7
- UniProtKB: P50652 (UniProtKB/Swiss-Prot),   E9PXX6 (UniProtKB/Swiss-Prot),   Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013739   ⟸   XM_036157846
- Peptide Label: isoform X10
- UniProtKB: Q8CBR3 (UniProtKB/TrEMBL),   Q3UI88 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036013741   ⟸   XM_036157848
- Peptide Label: isoform X15

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P50652-F1-model_v2 AlphaFold P50652 1-591 view protein structure

Promoters
RGD ID:6823891
Promoter ID:MM_KWN:14442
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000076351
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361363,418,301 - 63,419,547 (-)MPROMDB
RGD ID:6823890
Promoter ID:MM_KWN:14443
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Kidney,   MEF_B6
Transcripts:OTTMUST00000076350
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361363,426,346 - 63,426,847 (-)MPROMDB
RGD ID:8680626
Promoter ID:EPDNEW_M18344
Type:initiation region
Name:Fancc_1
Description:Mus musculus Fanconi anemia, complementation group C , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381363,431,724 - 63,431,784EPDNEW
RGD ID:6823889
Promoter ID:MM_KWN:14444
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000076349
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361363,433,786 - 63,434,286 (-)MPROMDB
RGD ID:6823888
Promoter ID:MM_KWN:14452
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000021916,   NM_001042673,   NM_007985,   OTTMUST00000076339,   OTTMUST00000076340,   OTTMUST00000076342,   OTTMUST00000076343,   UC007QXR.1,   UC007QXS.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361363,532,851 - 63,533,352 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:95480 AgrOrtholog
Ensembl Genes ENSMUSG00000021461 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000073029 ENTREZGENE
  ENSMUST00000073029.13 UniProtKB/TrEMBL
  ENSMUST00000099444 ENTREZGENE
  ENSMUST00000099444.10 UniProtKB/TrEMBL
  ENSMUST00000159024.2 UniProtKB/TrEMBL
  ENSMUST00000160617.2 UniProtKB/TrEMBL
  ENSMUST00000160735.8 UniProtKB/TrEMBL
  ENSMUST00000160931.2 UniProtKB/TrEMBL
  ENSMUST00000161977 ENTREZGENE
  ENSMUST00000161977.8 UniProtKB/TrEMBL
  ENSMUST00000162375.8 UniProtKB/TrEMBL
  ENSMUST00000162971.8 UniProtKB/TrEMBL
  ENSMUST00000163091 ENTREZGENE
  ENSMUST00000163091.8 UniProtKB/Swiss-Prot
  ENSMUST00000220684.2 UniProtKB/TrEMBL
InterPro FANCC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:14088 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:95480 ENTREZGENE
NCBI Gene 14088 ENTREZGENE
PANTHER FANCONI ANEMIA GROUP C PROTEIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16798 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Fanconi_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Fancc PhenoGen
PIRSF FACC_protein UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS FANCONICGENE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A1Y7VKS5_MOUSE UniProtKB/TrEMBL
  E0CXC4_MOUSE UniProtKB/TrEMBL
  E0CYC3_MOUSE UniProtKB/TrEMBL
  E0CYI2_MOUSE UniProtKB/TrEMBL
  E0CYQ7_MOUSE UniProtKB/TrEMBL
  E0CYY7_MOUSE UniProtKB/TrEMBL
  E9PXX6 ENTREZGENE
  E9QAE8 ENTREZGENE, UniProtKB/TrEMBL
  F7DEE2_MOUSE UniProtKB/TrEMBL
  FANCC_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3UI88 ENTREZGENE, UniProtKB/TrEMBL
  Q3V2X6_MOUSE UniProtKB/TrEMBL
  Q8CBR3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary E9PXX6 UniProtKB/Swiss-Prot