Stx2 (syntaxin 2) - Rat Genome Database

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Gene: Stx2 (syntaxin 2) Mus musculus
Analyze
Symbol: Stx2
Name: syntaxin 2
RGD ID: 10530
MGI Page MGI
Description: Exhibits calcium-dependent protein binding activity. Involved in acrosome reaction and cell differentiation. Localizes to several cellular components, including cell surface; cell-cell junction; and membrane raft. Is expressed in several structures, including early conceptus; ganglia; genitourinary system; lung; and olfactory epithelium. Orthologous to human STX2 (syntaxin 2); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-hydroxy-5alpha-androstan-3-one; 2,3',4,4',5-Pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AW538950; Ep; Epim; epimorphin; G1-536-1; MGC54718; rep; repro34; Syn; Syn-2; syntaxin-2
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,061,621 - 129,085,664 (-)NCBIGRCm39mm39
GRCm39 Ensembl5129,061,621 - 129,085,638 (-)Ensembl
GRCm385128,984,557 - 129,008,600 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5128,984,557 - 129,008,574 (-)EnsemblGRCm38mm10GRCm38
MGSCv375129,490,436 - 129,514,439 (-)NCBIGRCm37mm9NCBIm37
MGSCv365129,299,275 - 129,323,282 (-)NCBImm8
MGSCv365127,256,039 - 127,280,159 (-)NCBImm8
Celera5126,018,075 - 126,042,529 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map567.99NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References

Additional References at PubMed
PMID:1530610   PMID:1581962   PMID:7957204   PMID:8774707   PMID:10100732   PMID:10349636   PMID:10469351   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11702001  
PMID:11784086   PMID:12477932   PMID:14610273   PMID:15536072   PMID:15685636   PMID:15774481   PMID:16141072   PMID:16141073   PMID:16204027   PMID:16246199   PMID:16512851   PMID:16602821  
PMID:16710473   PMID:17535848   PMID:17935821   PMID:18273050   PMID:18277055   PMID:18321981   PMID:18535671   PMID:19129200   PMID:20195239   PMID:20305811   PMID:20458144   PMID:21267068  
PMID:21677750   PMID:21873635   PMID:22767500   PMID:23219092   PMID:23359859   PMID:23595907   PMID:23867473   PMID:23886856   PMID:26371508   PMID:26957544   PMID:28115395   PMID:29570232  
PMID:29631377  


Genomics

Comparative Map Data
Stx2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395129,061,621 - 129,085,664 (-)NCBIGRCm39mm39
GRCm39 Ensembl5129,061,621 - 129,085,638 (-)Ensembl
GRCm385128,984,557 - 129,008,600 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5128,984,557 - 129,008,574 (-)EnsemblGRCm38mm10GRCm38
MGSCv375129,490,436 - 129,514,439 (-)NCBIGRCm37mm9NCBIm37
MGSCv365129,299,275 - 129,323,282 (-)NCBImm8
MGSCv365127,256,039 - 127,280,159 (-)NCBImm8
Celera5126,018,075 - 126,042,529 (-)NCBICelera
Cytogenetic Map5G1.3NCBI
cM Map567.99NCBI
STX2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12130,789,600 - 130,839,266 (-)EnsemblGRCh38hg38GRCh38
GRCh3812130,789,600 - 130,839,274 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712131,274,145 - 131,323,795 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612129,840,098 - 129,889,764 (-)NCBINCBI36hg18NCBI36
Build 3412129,799,028 - 129,848,691NCBI
Celera12130,887,358 - 130,937,200 (-)NCBI
Cytogenetic Map12q24.33NCBI
HuRef12128,256,936 - 128,306,689 (-)NCBIHuRef
CHM1_112131,094,820 - 131,144,677 (-)NCBICHM1_1
Stx2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21227,678,744 - 27,714,751 (+)NCBI
Rnor_6.0 Ensembl1231,335,372 - 31,360,254 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01231,324,203 - 31,360,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01233,250,624 - 33,286,683 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41228,751,591 - 28,773,351 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11228,614,978 - 28,636,739 (+)NCBI
Celera1229,385,007 - 29,406,766 (+)NCBICelera
RH 3.4 Map12461.4RGD
Cytogenetic Map12q13NCBI
Stx2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554821,252,600 - 1,270,913 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554821,249,972 - 1,273,250 (+)NCBIChiLan1.0ChiLan1.0
STX2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112132,612,870 - 132,650,554 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12132,614,793 - 132,650,559 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012128,416,793 - 128,464,452 (-)NCBIMhudiblu_PPA_v0panPan3
STX2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1261,459,110 - 1,494,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl261,454,189 - 1,494,823 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha261,649,625 - 1,694,969 (+)NCBI
ROS_Cfam_1.0261,695,058 - 1,740,740 (+)NCBI
UMICH_Zoey_3.1261,631,450 - 1,676,459 (+)NCBI
UNSW_CanFamBas_1.0261,728,343 - 1,773,741 (+)NCBI
UU_Cfam_GSD_1.0261,635,560 - 1,681,133 (+)NCBI
Stx2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118123,068,259 - 123,104,309 (+)NCBI
SpeTri2.0NW_0049366601,616,774 - 1,652,585 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STX2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1424,341,333 - 24,380,630 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11424,341,473 - 24,380,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21425,870,829 - 25,927,683 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STX2
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111126,174,446 - 126,225,342 (-)NCBI
ChlSab1.1 Ensembl11126,178,803 - 126,224,277 (-)Ensembl
Stx2
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474727,247,947 - 27,272,698 (-)NCBI

Position Markers
AW538950  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G1.3UniSTS
Whitehead/MRC_RH51576.04UniSTS
Stx2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5G1.3UniSTS
cM Map570.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526236236138457140Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)569900000132500000Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572700000140000000Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574300000132500000Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574300000132500000Mouse
1301362Prnr1_mprion resistance 1 (mouse)Not determined589271017146851125Mouse
1301974Chab7_mcholesterol absorption 7 (mouse)Not determined595085348129085464Mouse
1357644Egrd1_mearly growth rate, direct effect 1 (mouse)Not determined595286714129286920Mouse
1558774Lith17_mlithogenic gene 17 (mouse)Not determined595317683129317856Mouse
10402486Dipa1_mdrug induced psychomotor activation 1 (mouse)Not determined595317683129317856Mouse
13464244Ahl19_mage related hearing loss, early onset 19 (mouse)595317683129317856Mouse
1300940Actd3_mactivity-distance traveled 3 (mouse)Not determined596172519130172667Mouse
1300659Pcd8ts1_mp-glycoprotein positive CD8 T cell subset 1 (mouse)Not determined596883692130883925Mouse
1301858Smdq1_msegregation of mitochondrial DNA QTL 1 (mouse)Not determined596883692130883925Mouse
12904945Tammq2_mtibialis anterior muscle mass QTL 2 (mouse)5100527900134527900Mouse
12904959Smmq1_msoleus muscle mass QTL 1 (mouse)5100527900134527900Mouse
12859290Criq2_mCitrobacter rodentium infection QTL 2 (mouse)5101194514135194514Mouse
1301624Aevm2_mautoimmune extremity vasculitis in MRL mice 2 (mouse)Not determined5101725767135725963Mouse
14746986Manh58_mmandible shape 58 (mouse)5102308218136308218Mouse
11532736Sluc33b_msusceptibility to lung cancer 33b (mouse)5102806972136807131Mouse
10412202Bbaa26_mB.burgdorferi-associated arthritis 26 (mouse)Not determined5104435822138557193Mouse
10412239Alpq7_malcohol preference QTL 7 (mouse)Not determined5104567876138567876Mouse
4142473Chlq11_mcirculating hormone level QTL 11 (mouse)Not determined5107829235141829348Mouse
10043890Trigq4_mtriglyceride QTL 4 (mouse)Not determined5107829235141829348Mouse
13464243Ahl20_mage related hearing loss, early onset 20 (mouse)5107829235141829348Mouse
10412197Bbaa25_mB.burgdorferi-associated arthritis 25 (mouse)Not determined5109090176143090317Mouse
13464251Ahl21_mage related hearing loss, early onset 21 (mouse)5109090176143090317Mouse
1301543Hypch_mhypercholesterolemia (mouse)Not determined5109090758139133150Mouse
1300913Bwefm_mbody weight females and males day 10 (mouse)Not determined5109362284143362395Mouse
1301102Cia14_mcollagen induced arthritis 14 (mouse)Not determined5113172519138557193Mouse
1357662Lprq4_mlipoprotein QTL 4 (mouse)Not determined5113883692129555542Mouse
1300827Cora1_mcorrelation in cytokine production 1 (mouse)Not determined5115128044149128176Mouse
1301226Bbaa2_mB.burgdorferi-associated arthritis 2 (mouse)Not determined5115128044149128176Mouse
1301857Bglq14_mbody growth late QTL 14 (mouse)Not determined5118920110151834684Mouse
10412191Bbaa24_mB.burgdorferi-associated arthritis 24 (mouse)Not determined5119806972141714711Mouse
4141081Nidd7k_mNidd7 on KK-A (mouse)Not determined119806972149423861Mouse
11528552Scram1_mspinal cord resistance to astrocytoma modifier 1 (mouse)5121457140151834684Mouse
1301986Bpq4_mblood pressure QTL 4 (mouse)Not determined5121556974151834684Mouse
1302079Lbw3_mlupus NZB x NZW 3 (mouse)Not determined5124714580151834684Mouse
1301715Elmaz2_melevated maze behavior 2 (mouse)Not determined5125101165141714711Mouse
1301363Pbwg13_mpostnatal body weight growth 13 (mouse)Not determined5125147702151834684Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1922
Count of miRNA genes:630
Interacting mature miRNAs:791
Transcripts:ENSMUST00000031378, ENSMUST00000100680, ENSMUST00000128448, ENSMUST00000141492, ENSMUST00000144846, ENSMUST00000149877, ENSMUST00000151712
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001286033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001359022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007941 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_152615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006504276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_377049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC110566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU757762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ166382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ232084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  D10475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000031378   ⟹   ENSMUSP00000031378
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,984,557 - 129,008,574 (-)Ensembl
RefSeq Acc Id: ENSMUST00000100680   ⟹   ENSMUSP00000098247
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,984,563 - 129,008,535 (-)Ensembl
RefSeq Acc Id: ENSMUST00000128448
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,986,155 - 128,989,158 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141492
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,988,908 - 129,008,423 (-)Ensembl
RefSeq Acc Id: ENSMUST00000144846
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,988,665 - 128,989,849 (-)Ensembl
RefSeq Acc Id: ENSMUST00000149877   ⟹   ENSMUSP00000118220
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,993,509 - 128,999,635 (-)Ensembl
RefSeq Acc Id: ENSMUST00000151712
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,990,641 - 129,008,549 (-)Ensembl
RefSeq Acc Id: ENSMUST00000195906   ⟹   ENSMUSP00000142681
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,993,495 - 129,008,444 (-)Ensembl
RefSeq Acc Id: ENSMUST00000199813
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl5128,999,088 - 129,008,546 (-)Ensembl
RefSeq Acc Id: NM_001286033   ⟹   NP_001272962
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,085,636 (-)NCBI
GRCm385128,984,557 - 129,008,572 (-)NCBI
Celera5126,018,071 - 126,042,537 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286034   ⟹   NP_001272963
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,085,636 (-)NCBI
GRCm385128,984,557 - 129,008,572 (-)NCBI
Celera5126,018,071 - 126,042,537 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001359022   ⟹   NP_001345951
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,067,300 (-)NCBI
GRCm385128,984,557 - 128,990,236 (-)NCBI
Sequence:
RefSeq Acc Id: NM_007941   ⟹   NP_031967
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,085,636 (-)NCBI
GRCm385128,984,557 - 129,008,572 (-)NCBI
MGSCv375129,490,436 - 129,514,439 (-)RGD
Celera5126,018,071 - 126,042,537 (-)NCBI
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_152615
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,085,636 (-)NCBI
GRCm385128,984,557 - 129,008,572 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006504276   ⟹   XP_006504339
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,065,983 - 129,085,664 (-)NCBI
GRCm385128,988,919 - 129,008,600 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942435
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,065,866 - 129,085,664 (-)NCBI
RefSeq Acc Id: XR_004942436
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,085,664 (-)NCBI
RefSeq Acc Id: XR_004942437
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,085,664 (-)NCBI
RefSeq Acc Id: XR_377049
RefSeq Status:
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm395129,061,621 - 129,085,664 (-)NCBI
GRCm385128,984,557 - 129,008,599 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031967   ⟸   NM_007941
- Peptide Label: isoform a
- UniProtKB: Q80W45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272963   ⟸   NM_001286034
- Peptide Label: isoform c
- UniProtKB: Q3TJ55 (UniProtKB/TrEMBL),   Q80W45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001272962   ⟸   NM_001286033
- Peptide Label: isoform b
- UniProtKB: Q3TJ55 (UniProtKB/TrEMBL),   Q80W45 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006504339   ⟸   XM_006504276
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001345951   ⟸   NM_001359022
- Peptide Label: isoform d precursor
RefSeq Acc Id: ENSMUSP00000031378   ⟸   ENSMUST00000031378
RefSeq Acc Id: ENSMUSP00000118220   ⟸   ENSMUST00000149877
RefSeq Acc Id: ENSMUSP00000098247   ⟸   ENSMUST00000100680
RefSeq Acc Id: ENSMUSP00000142681   ⟸   ENSMUST00000195906
Protein Domains
SynN   t-SNARE coiled-coil homology

Promoters
RGD ID:6888166
Promoter ID:EPDNEW_M7534
Type:single initiation site
Name:Stx2_2
Description:Mus musculus syntaxin 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7535  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385129,007,524 - 129,007,584EPDNEW
RGD ID:6888168
Promoter ID:EPDNEW_M7535
Type:initiation region
Name:Stx2_1
Description:Mus musculus syntaxin 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7534  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm385129,008,502 - 129,008,562EPDNEW
RGD ID:6838444
Promoter ID:MM_KWN:44192
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000068564,   OTTMUST00000068566
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365129,494,851 - 129,495,582 (-)MPROMDB
RGD ID:6838443
Promoter ID:MM_KWN:44193
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000068565
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365129,505,131 - 129,505,717 (-)MPROMDB
RGD ID:6838442
Promoter ID:MM_KWN:44194
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000068560,   OTTMUST00000068563,   UC008ZSP.1,   UC008ZSQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv365129,514,221 - 129,514,721 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:108059 AgrOrtholog
Ensembl Genes ENSMUSG00000029428 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000031378 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000098247 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000118220 UniProtKB/TrEMBL
  ENSMUSP00000142681 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000031378 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000100680 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000149877 UniProtKB/TrEMBL
  ENSMUST00000195906 UniProtKB/TrEMBL
InterPro SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STX2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin/epimorphin_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13852 UniProtKB/TrEMBL
MGD MGI:108059 ENTREZGENE
NCBI Gene 13852 ENTREZGENE
PANTHER PTHR19957:SF36 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Syntaxin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Stx2 PhenoGen
PROSITE SYNTAXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  T_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SynN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  t_SNARE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47661 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JE94_MOUSE UniProtKB/TrEMBL
  D3YY94_MOUSE UniProtKB/TrEMBL
  Q00262 ENTREZGENE
  Q3TJ55 ENTREZGENE, UniProtKB/TrEMBL
  Q3TN38_MOUSE UniProtKB/TrEMBL
  Q80W45 ENTREZGENE, UniProtKB/TrEMBL
  STX2_MOUSE UniProtKB/Swiss-Prot