Dmd (dystrophin, muscular dystrophy) - Rat Genome Database

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Gene: Dmd (dystrophin, muscular dystrophy) Mus musculus
Analyze
Symbol: Dmd
Name: dystrophin, muscular dystrophy
RGD ID: 10479
MGI Page MGI
Description: Enables nitric-oxide synthase binding activity. Involved in several processes, including negative regulation of protein modification process; positive regulation of cell-matrix adhesion; and regulation of cation transmembrane transport. Acts upstream of or within several processes, including muscle cell cellular homeostasis; negative regulation of ERK1 and ERK2 cascade; and nervous system development. Located in several cellular components, including Z disc; cell-substrate junction; and sarcolemma. Part of dystrophin-associated glycoprotein complex. Is expressed in several structures, including alimentary system; cardiovascular system; central nervous system; musculature; and skin. Used to study Becker muscular dystrophy and Duchenne muscular dystrophy. Human ortholog(s) of this gene implicated in cognitive disorder; dilated cardiomyopathy (multiple); intellectual disability; and muscular dystrophy (multiple). Orthologous to human DMD (dystrophin).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: Dp42; Dp427; Dp7; Dp71; Duchenne muscular dystrophy; DXSmh7; DXSmh9; dy; dys; dystrophin; dystrophin Dp40; dystrophin Dp71; dystrophin Dp71 delta110 isoform; dystrophin Dp71 isoform; dystrophin Dp71a; dystrophin Dp71ab; dystrophin Dp71b; dystrophin Dp71c isoform; dystrophin Dp71d delta71,74 isoform; dystrophin Dp71d delta74 isoform; dystrophin Dp71d(delta71,73-74); dystrophin Dp71f delta71,78 isoform; dystrophin Dp71f delta74 isoform; mdx; pk; pke; X-linked muscular dystrophy
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X81,858,244 - 84,248,656 (+)NCBIGRCm39mm39
GRCm39 EnsemblX81,992,476 - 84,249,747 (+)Ensembl
GRCm38X82,814,664 - 85,205,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX82,948,870 - 85,206,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X80,194,209 - 82,450,389 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X79,201,622 - 81,457,760 (+)NCBImm8
CeleraX74,178,103 - 76,399,942 (+)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX38.38NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
Animal Disease Models  (ISO)
arrhythmogenic right ventricular cardiomyopathy  (ISO)
Ataxia  (ISO)
atrial heart septal defect  (ISO)
autistic disorder  (ISO)
Becker muscular dystrophy  (IEA,ISO)
brain edema  (ISO)
calcinosis  (ISO)
Cardiac Conduction Defect  (ISO)
Cardiac Fibrosis  (ISO)
Cardiomegaly  (ISO)
cardiomyopathy  (ISO)
cataract  (IMP)
cognitive disorder  (ISO)
colorectal cancer  (ISO)
congestive heart failure  (ISO)
Dehydration  (ISO)
dilated cardiomyopathy  (ISO)
dilated cardiomyopathy 1A  (ISO)
dilated cardiomyopathy 1B  (ISO)
Dilated Cardiomyopathy with Left Ventricular Noncompaction  (ISO)
Duchenne muscular dystrophy  (IEA,IGI,IMP,ISO)
Duchenne Muscular Dystrophy, Mental Retardation, and Absence of ERG B-wave  (ISO)
embryonal rhabdomyosarcoma  (ISO)
Exertional Myalgia, Muscle Stiffness and Myoglobinuria  (ISO)
exophthalmos  (ISO)
Experimental Seizures  (ISO)
familial hypertrophic cardiomyopathy  (ISO)
Funnel Chest  (ISO)
gastrointestinal stromal tumor  (ISO)
genetic disease  (ISO)
Heart Block  (ISO)
hypertrophic cardiomyopathy  (ISO)
intellectual disability  (ISO)
isolated elevated serum creatine phosphokinase levels  (ISO)
leiomyosarcoma  (ISO)
long QT syndrome  (ISO)
Muscle Cramp  (ISO)
Muscle Weakness  (ISO)
muscular atrophy  (ISO)
muscular dystrophy  (ISO)
Muscular Dystrophy, Animal  (ISO)
myocarditis  (IMP)
myopathy  (ISO)
Necrosis  (ISO)
Neoplasm Invasiveness  (ISO)
Neoplasm Metastasis  (ISO)
Neurodevelopmental Disorders  (ISO)
ornithine carbamoyltransferase deficiency  (ISO)
polycystic ovary syndrome  (ISO)
ptosis  (ISO)
restrictive cardiomyopathy  (ISO)
retinal degeneration  (ISO)
schizophrenia  (ISO)
Spasm  (ISO)
status epilepticus  (ISO)
syndromic X-linked intellectual disability Lubs type  (ISO)
Ventricular Dysfunction  (ISO)
X-linked adrenal hypoplasia congenita  (ISO)
X-linked dilated cardiomyopathy  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (ISO)
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,6-dinitrotoluene  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
6alpha-methylprednisolone  (EXP)
acetaldehyde  (EXP)
acrylamide  (ISO)
aflatoxin B1  (EXP,ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
apocynin  (EXP)
aristolochic acid  (ISO)
arsenite(3-)  (ISO)
ATP  (EXP)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bis(2-chloroethyl) sulfide  (EXP)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
calcium atom  (EXP)
calcium(0)  (EXP)
cannabidiol  (EXP)
Cannabidivarin  (EXP)
carbon nanotube  (EXP)
chlordecone  (EXP)
clofibrate  (EXP)
copper(II) chloride  (ISO)
crocidolite asbestos  (EXP)
Cuprizon  (ISO)
cyclosporin A  (ISO)
daunorubicin  (ISO)
DDT  (ISO)
dibutyl phthalate  (EXP)
dinophysistoxin 1  (ISO)
dioxygen  (EXP)
dobutamine  (EXP)
doxorubicin  (EXP,ISO)
endosulfan  (ISO)
ethanol  (EXP)
etoposide  (ISO)
fenofibrate  (EXP)
flusilazole  (EXP)
folic acid  (EXP)
formaldehyde  (ISO)
fulvestrant  (ISO)
geldanamycin  (ISO)
genistein  (ISO)
gentamycin  (EXP,ISO)
graphite  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (EXP,ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
menadione  (EXP)
methamphetamine  (EXP)
mitomycin C  (ISO)
mitoxantrone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-ethyl-N-nitrosourea  (EXP)
nickel atom  (ISO)
nifedipine  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (EXP,ISO)
pirinixic acid  (EXP)
progesterone  (ISO)
propanal  (ISO)
resveratrol  (EXP)
serpentine asbestos  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
spermine  (EXP)
taurine  (EXP)
tetrachloromethane  (EXP)
tioguanine  (ISO)
trichostatin A  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vincristine  (ISO)
vorinostat  (ISO)
zidovudine  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
actin cytoskeleton organization  (IBA)
aging  (ISO)
cardiac muscle cell action potential  (IMP)
cardiac muscle contraction  (ISO)
cell differentiation  (ISO)
cerebral cortex development  (ISO)
establishment of blood-nerve barrier  (IMP)
establishment of glial blood-brain barrier  (IMP)
muscle cell cellular homeostasis  (IMP)
muscle cell development  (IBA,IGI)
muscle cell differentiation  (ISO)
muscle organ development  (IMP)
myotube cell development  (IMP)
negative regulation of ERK1 and ERK2 cascade  (IMP)
negative regulation of neuron differentiation  (ISO)
negative regulation of peptidyl-cysteine S-nitrosylation  (IMP)
negative regulation of peptidyl-serine phosphorylation  (IMP)
neuron development  (IBA)
neuron differentiation  (ISO)
neuron projection morphogenesis  (ISO)
neurotransmitter receptor metabolic process  (IMP)
nucleus localization  (IMP)
olfactory nerve structural organization  (IMP)
peptide biosynthetic process  (ISO)
positive regulation of cell population proliferation  (ISO)
positive regulation of cell-matrix adhesion  (IMP)
positive regulation of neuron differentiation  (ISO)
positive regulation of neuron projection development  (ISO)
positive regulation of sodium ion transmembrane transporter activity  (IMP)
protein localization  (IMP,ISO)
protein-containing complex assembly  (IMP)
regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion  (IMP)
regulation of cell cycle  (ISO)
regulation of cellular response to growth factor stimulus  (ISO)
regulation of gene expression  (IMP)
regulation of heart rate  (IMP,ISO)
regulation of membrane potential  (IMP)
regulation of muscle system process  (IBA)
regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum  (IMP)
regulation of ryanodine-sensitive calcium-release channel activity  (IMP)
regulation of skeletal muscle contraction  (IMP)
regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion  (IMP)
regulation of transcription, DNA-templated  (IMP)
regulation of voltage-gated calcium channel activity  (IMP)
response to denervation involved in regulation of muscle adaptation  (ISO)
response to muscle stretch  (IMP)
response to water deprivation  (ISO)
skeletal muscle tissue development  (IBA,IGI,IMP)
skeletal muscle tissue regeneration  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal atrium myocardial trabeculae morphology  (IAGP)
abnormal auditory brainstem response waveform shape  (IAGP)
abnormal blood circulation  (IAGP)
abnormal bone structure  (IEA)
abnormal breathing pattern  (IAGP)
abnormal calcium level  (IAGP)
abnormal cardiovascular system morphology  (IAGP)
abnormal circulating pyruvate kinase level  (IAGP)
abnormal corticotroph morphology  (IAGP)
abnormal diaphragm morphology  (IAGP)
abnormal digestive system morphology  (IAGP)
abnormal epaxial muscle morphology  (IAGP)
abnormal eye electrophysiology  (IAGP)
abnormal gait  (IAGP)
abnormal grip strength  (IAGP)
abnormal heart atrium morphology  (IAGP)
abnormal heart echocardiography feature  (IAGP)
abnormal heart ventricle morphology  (IAGP)
abnormal hindlimb morphology  (IAGP)
abnormal hypaxial muscle morphology  (IAGP)
abnormal intercostal muscle morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal mitochondrial shape  (IAGP)
abnormal motor capabilities/coordination/movement  (IAGP)
abnormal Muller cell morphology  (IAGP)
abnormal muscle contractility  (IAGP)
abnormal muscle development  (IAGP)
abnormal muscle electrophysiology  (IAGP)
abnormal muscle fiber morphology  (IAGP)
abnormal muscle morphology  (IAGP)
abnormal muscle physiology  (IAGP)
abnormal muscle relaxation  (IAGP)
abnormal muscle tone  (IAGP)
abnormal myocardial fiber morphology  (IAGP)
abnormal myocardial fiber physiology  (IAGP)
abnormal myotube morphology  (IAGP)
abnormal neuromuscular synapse morphology  (IAGP)
abnormal physical strength  (IAGP)
abnormal plasma membrane morphology  (IAGP)
abnormal posture  (IAGP)
abnormal respiratory quotient  (IAGP)
abnormal sarcolemma morphology  (IAGP)
abnormal scalene muscle morphology  (IAGP)
abnormal skeletal muscle fiber morphology  (IAGP)
abnormal skeletal muscle fiber size  (IAGP)
abnormal skeletal muscle fiber type ratio  (IAGP)
abnormal skeletal muscle morphology  (IAGP)
abnormal skeletal muscle regeneration  (IAGP)
abnormal skeletal muscle satellite cell proliferation  (IAGP)
abnormal spine curvature  (IAGP)
abnormal vertebral column morphology  (IAGP)
absent CD4-positive, alpha beta T cells  (IAGP)
absent CD8-positive, alpha-beta T cells  (IAGP)
anterior subcapsular cataract  (IAGP)
calcified muscle  (IAGP)
cardiac fibrosis  (IAGP)
cardiac interstitial fibrosis  (IAGP)
cardiac muscle degeneration  (IAGP)
cardiac muscle necrosis  (IAGP)
cardiomyopathy  (IAGP)
centrally nucleated skeletal muscle fibers  (IAGP)
chromosomal instability  (IAGP)
decreased aerobic running capacity  (IAGP)
decreased B cell number  (IAGP)
decreased body fat mass  (IAGP)
decreased body mass index  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral content  (IEA)
decreased cardiac muscle contractility  (IAGP)
decreased cardiac output  (IAGP)
decreased cardiac stroke volume  (IAGP)
decreased circulating amylase level  (IEA)
decreased granulocyte number  (IAGP)
decreased grip strength  (IAGP)
decreased lean body mass  (IAGP)
decreased litter size  (IAGP)
decreased locomotor activity  (IAGP)
decreased macrophage cell number  (IAGP)
decreased mean corpuscular hemoglobin  (IEA)
decreased mean corpuscular volume  (IEA)
decreased mitochondrial size  (IAGP)
decreased muscle weight  (IAGP)
decreased neutrophil cell number  (IAGP)
decreased P wave amplitude  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased quadriceps weight  (IAGP)
decreased satellite cell number  (IAGP)
decreased skeletal muscle fiber diameter  (IAGP)
decreased skeletal muscle fiber number  (IAGP)
decreased skeletal muscle fiber size  (IAGP)
decreased skeletal muscle mass  (IAGP)
decreased skeletal muscle weight  (IAGP)
decreased susceptibility to injury  (IAGP)
decreased susceptibility to Picornaviridae infection  (IAGP)
decreased T cell number  (IAGP)
decreased telomere length  (IAGP)
decreased transforming growth factor beta level  (IAGP)
decreased ventricle muscle contractility  (IAGP)
diaphragmitis  (IAGP)
dilated cardiomyopathy  (IAGP)
dilated heart left ventricle  (IAGP)
dilated sarcoplasmic reticulum  (IAGP)
disorganized mitochondrial cristae  (IAGP)
dystrophic cardiac calcinosis  (IAGP)
dystrophic muscle  (IAGP)
enhanced skeletal muscle regeneration  (IAGP)
enlarged heart  (IAGP)
enlarged myocardial fiber  (IAGP)
extended life span  (IAGP)
fatigue  (IAGP)
heart inflammation  (IAGP)
impaired coordination  (IAGP)
impaired exercise endurance  (IAGP)
impaired muscle relaxation  (IAGP)
impaired skeletal muscle contractility  (IAGP)
impaired skeletal muscle regeneration  (IAGP)
increased body size  (IAGP)
increased body weight  (IAGP)
increased capillary density  (IAGP)
increased carbon dioxide production  (IAGP)
increased cardiac muscle contractility  (IAGP)
increased circulating alanine transaminase level  (IEA)
increased circulating alkaline phosphatase level  (IEA)
increased circulating aspartate transaminase level  (IEA)
increased circulating creatine kinase level  (IAGP)
increased circulating total protein level  (IEA)
increased creatine kinase activity  (IAGP)
increased creatine kinase level  (IAGP)
increased growth hormone level  (IAGP)
increased heart left ventricle size  (IAGP)
increased heart weight  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased interleukin-12 secretion  (IAGP)
increased interleukin-2 secretion  (IAGP)
increased interleukin-4 secretion  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased lean body mass  (IEA)
increased macrophage cell number  (IAGP)
increased mitochondrial number  (IAGP)
increased monocyte cell number  (IAGP)
increased or absent threshold for auditory brainstem response  (IAGP)
increased oxygen consumption  (IAGP)
increased quadriceps weight  (IAGP)
increased red blood cell distribution width  (IEA)
increased regulatory T cell number  (IAGP)
increased satellite cell number  (IAGP)
increased skeletal muscle fiber diameter  (IAGP)
increased skeletal muscle fiber number  (IAGP)
increased skeletal muscle fiber size  (IAGP)
increased skeletal muscle mass  (IAGP)
increased skeletal muscle weight  (IAGP)
increased somatotroph cell size  (IAGP)
increased susceptibility to injury  (IAGP)
increased susceptibility to noise-induced hearing loss  (IAGP)
increased T cell number  (IAGP)
increased total body fat amount  (IAGP)
increased transforming growth factor beta level  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
increased variability of skeletal muscle fiber size  (IAGP)
kyphosis  (IAGP)
male infertility  (IAGP)
muscle degeneration  (IAGP)
muscle fatigue  (IAGP)
muscle weakness  (IAGP)
muscular atrophy  (IAGP)
myocardial fiber degeneration  (IAGP)
myocardial fiber disarray  (IAGP)
myocarditis  (IAGP)
myocardium necrosis  (IAGP)
myopathy  (IAGP)
myositis  (IAGP)
no abnormal phenotype detected  (IAGP)
nuclear cataract  (IAGP)
oxidative stress  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
progressive muscle weakness  (IAGP)
prolonged P wave  (IAGP)
prolonged QRS complex duration  (IAGP)
reduced female fertility  (IAGP)
reduced fertility  (IAGP)
respiratory failure  (IAGP)
retina ischemia  (IAGP)
short stride length  (IAGP)
skeletal muscle atrophy  (IAGP)
skeletal muscle degeneration  (IAGP)
skeletal muscle endomysial fibrosis  (IAGP)
skeletal muscle fiber atrophy  (IAGP)
skeletal muscle fiber degeneration  (IAGP)
skeletal muscle fiber necrosis  (IAGP)
skeletal muscle fibrosis  (IAGP)
skeletal muscle hypertrophy  (IAGP)
skeletal muscle interstitial fibrosis  (IAGP)
skeletal muscle necrosis  (IAGP)
slow postnatal weight gain  (IAGP)
thick ventricular wall  (IAGP)
thin diaphragm muscle  (IAGP)
thrombocytosis  (IEA)
tremors  (IAGP)
ventricular cardiomyopathy  (IAGP)
weakness  (IAGP)
weight loss  (IAGP)
References

References - curated
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16. Malhotra SB, etal., Science. 1988 Nov 4;242(4879):755-9.
17. MGD and Homologene mouse data transfer
18. MGD data from the GO Consortium
19. MGD IEA
20. Miller G, etal., Hum Mol Genet. 2012 Oct 15;21(20):4508-20. Epub 2012 Jul 18.
21. Nakamura K, etal., Sci Rep. 2014 Jul 9;4:5635. doi: 10.1038/srep05635.
22. OMIM Disease Annotation Pipeline
23. Pipeline to import KEGG annotations from KEGG into RGD
24. RGD automated import pipeline
25. RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
26. RGD automated import pipeline for gene-chemical interactions
27. Spitali P, etal., FASEB J. 2013 Dec;27(12):4909-16. doi: 10.1096/fj.13-232025. Epub 2013 Aug 23.
28. Vatta M, etal., J Cardiovasc Med (Hagerstown). 2009 Feb;10(2):149-56. doi: 10.2459/JCM.0b013e328318954c.
29. Wehling-Henricks M, etal., Hum Mol Genet. 2005 Jul 15;14(14):1921-33. doi: 10.1093/hmg/ddi197. Epub 2005 May 25.
Additional References at PubMed
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PMID:1469448   PMID:1506855   PMID:1543903   PMID:1557078   PMID:1572636   PMID:1572655   PMID:1579466   PMID:1584249   PMID:1625810   PMID:1635838   PMID:1638087   PMID:1639415  
PMID:1661733   PMID:1674728   PMID:1679744   PMID:1684042   PMID:1684949   PMID:1685478   PMID:1686056   PMID:1691450   PMID:1740345   PMID:1757468   PMID:1772416   PMID:1791198  
PMID:1793820   PMID:1824797   PMID:1865908   PMID:1940973   PMID:1964443   PMID:1973136   PMID:1973380   PMID:1974879   PMID:1992296   PMID:2014247   PMID:2022969   PMID:2034278  
PMID:2041548   PMID:2055107   PMID:2144875   PMID:2183043   PMID:2183046   PMID:2250175   PMID:2407807   PMID:2448136   PMID:2561974   PMID:2571569   PMID:2573045   PMID:2662404  
PMID:2721933   PMID:2890215   PMID:2899541   PMID:2903046   PMID:2919177   PMID:2967442   PMID:3209690   PMID:3239377   PMID:3243423   PMID:3243547   PMID:3440862   PMID:3600793  
PMID:3600794   PMID:3607877   PMID:3659917   PMID:3773991   PMID:3962599   PMID:6543918   PMID:6583703   PMID:7477069   PMID:7481760   PMID:7484453   PMID:7498514   PMID:7527970  
PMID:7545544   PMID:7547961   PMID:7561939   PMID:7576492   PMID:7580246   PMID:7581360   PMID:7581361   PMID:7589578   PMID:7589898   PMID:7590750   PMID:7604978   PMID:7604983  
PMID:7608742   PMID:7624335   PMID:7630343   PMID:7633443   PMID:7643878   PMID:7651751   PMID:7659109   PMID:7659114   PMID:7666833   PMID:7673339   PMID:7683332   PMID:7722508  
PMID:7731967   PMID:7753128   PMID:7758695   PMID:7769014   PMID:7777057   PMID:7781901   PMID:7787807   PMID:7797624   PMID:7805729   PMID:7807158   PMID:7823979   PMID:7823981  
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PMID:26385637   PMID:26417069   PMID:26435413   PMID:26446751   PMID:26454207   PMID:26465071   PMID:26483274   PMID:26483453   PMID:26494902   PMID:26503985   PMID:26514267   PMID:26555638  
PMID:26566673   PMID:26569381   PMID:26598680   PMID:26604149   PMID:26619121   PMID:26626079   PMID:26645687   PMID:26658965   PMID:26669898   PMID:26711882   PMID:26721683   PMID:26721684  
PMID:26721686   PMID:26744329   PMID:26745801   PMID:26800321   PMID:26803937   PMID:26808526   PMID:26825125   PMID:26851247   PMID:26868633   PMID:26929074   PMID:26936078   PMID:26954670  
PMID:26966179   PMID:26974331   PMID:26986564   PMID:26999812   PMID:27015747   PMID:27037492   PMID:27091452   PMID:27094343   PMID:27106099   PMID:27110493   PMID:27127236   PMID:27143785  
PMID:27148972   PMID:27150455   PMID:27154199   PMID:27173853   PMID:27213537   PMID:27220066   PMID:27228662   PMID:27288449   PMID:27378686   PMID:27378693   PMID:27382459   PMID:27416839  
PMID:27436578   PMID:27441081   PMID:27447110   PMID:27466195   PMID:27477497   PMID:27486657   PMID:27506764   PMID:27524611   PMID:27560040   PMID:27569721   PMID:27597886   PMID:27617862  
PMID:27655900   PMID:27669143   PMID:27679742   PMID:27725085   PMID:27750047   PMID:27792813   PMID:27798095   PMID:27798107   PMID:27798264   PMID:27799523   PMID:27822449   PMID:27834955  
PMID:27836895   PMID:27881412   PMID:27908613   PMID:27908661   PMID:27924830   PMID:27977725   PMID:27977770   PMID:27988307   PMID:27993983   PMID:28017795   PMID:28041995   PMID:28082118  
PMID:28087735   PMID:28089792   PMID:28117277   PMID:28127699   PMID:28139640   PMID:28153048   PMID:28161362   PMID:28171583   PMID:28195574   PMID:28218909   PMID:28315675   PMID:28316061  
PMID:28326190   PMID:28334037   PMID:28364093   PMID:28432191   PMID:28436144   PMID:28439558   PMID:28453658   PMID:28463682   PMID:28472288   PMID:28481224   PMID:28498863   PMID:28498977  
PMID:28505980   PMID:28513807   PMID:28549178   PMID:28554556   PMID:28569755   PMID:28572004   PMID:28581497   PMID:28581498   PMID:28587652   PMID:28592916   PMID:28618254   PMID:28623422  
PMID:28625916   PMID:28709001   PMID:28744553   PMID:28785010   PMID:28787441   PMID:28790199   PMID:28798156   PMID:28826559   PMID:28826662   PMID:28939592   PMID:28970581   PMID:29036556  
PMID:29040534   PMID:29045431   PMID:29051551   PMID:29057908   PMID:29065150   PMID:29065908   PMID:29079520   PMID:29095865   PMID:29097503   PMID:29187535   PMID:29187645   PMID:29214629  
PMID:29215066   PMID:29224783   PMID:29242210   PMID:29272432   PMID:29320561   PMID:29351412   PMID:29351413   PMID:29381135   PMID:29395054   PMID:29408646   PMID:29412689   PMID:29433343  
PMID:29466448   PMID:29540680   PMID:29561896   PMID:29601589   PMID:29618008   PMID:29700358   PMID:29712757   PMID:29719249   PMID:29723037   PMID:29742392   PMID:29744875   PMID:29771357  
PMID:29772070   PMID:29790927   PMID:29852164   PMID:29879154   PMID:29889904   PMID:29895670   PMID:29912990   PMID:29943948   PMID:29987034   PMID:29991677   PMID:30010933   PMID:30051354  
PMID:30070693   PMID:30085099   PMID:30118340   PMID:30137316   PMID:30139748   PMID:30142334   PMID:30143619   PMID:30154729   PMID:30155598   PMID:30181262   PMID:30194302   PMID:30195724  
PMID:30202063   PMID:30206270   PMID:30232283   PMID:30236982   PMID:30262909   PMID:30279586   PMID:30281092   PMID:30282023   PMID:30304034   PMID:30304405   PMID:30312761   PMID:30336143  
PMID:30348945   PMID:30365532   PMID:30379896   PMID:30389854   PMID:30448404   PMID:30449715   PMID:30463013   PMID:30476171   PMID:30504831   PMID:30535187   PMID:30608588   PMID:30642627  
PMID:30650360   PMID:30672725   PMID:30684640   PMID:30689868   PMID:30699165   PMID:30713094   PMID:30713523   PMID:30716510   PMID:30745312   PMID:30759207   PMID:30760802   PMID:30806670  
PMID:30854433   PMID:30883742   PMID:30884219   PMID:30910999   PMID:30914715   PMID:30922843   PMID:30933664   PMID:30939245   PMID:30944252   PMID:30962487   PMID:30979776   PMID:30988454  
PMID:30995108   PMID:31009514   PMID:31013315   PMID:31017936   PMID:31018138   PMID:31028078   PMID:31036568   PMID:31043586   PMID:31091530   PMID:31142604   PMID:31189923   PMID:31193643  
PMID:31199961   PMID:31239312   PMID:31243277   PMID:31310630   PMID:31340406   PMID:31340667   PMID:31348492   PMID:31365291   PMID:31388039   PMID:31408461   PMID:31411676   PMID:31412923  
PMID:31413358   PMID:31444390   PMID:31468715   PMID:31504257   PMID:31506484   PMID:31543764   PMID:31573406   PMID:31574188   PMID:31586095   PMID:31620435   PMID:31626629   PMID:31685850  
PMID:31686651   PMID:31696230   PMID:31704708   PMID:31711918   PMID:31726040   PMID:31747313   PMID:31751316   PMID:31754018   PMID:31812072   PMID:31814696   PMID:31822623   PMID:31844279  
PMID:31852847   PMID:31857625   PMID:31857666   PMID:31868164   PMID:31874104   PMID:31877123   PMID:31910160   PMID:31926263   PMID:31980663   PMID:32017711   PMID:32019766   PMID:32023816  
PMID:32025735   PMID:32049345   PMID:32070725   PMID:32128412   PMID:32153426   PMID:32156081   PMID:32170063   PMID:32171922   PMID:32192914   PMID:32194185   PMID:32208990   PMID:32231219  
PMID:32240725   PMID:32275813   PMID:32293933   PMID:32310830   PMID:32325033   PMID:32332749   PMID:32360435   PMID:32383994   PMID:32391357   PMID:32407333   PMID:32434871   PMID:32453729  
PMID:32483152   PMID:32488044   PMID:32493839   PMID:32499563   PMID:32506037   PMID:32508664   PMID:32616572   PMID:32620696   PMID:32620803   PMID:32632164   PMID:32636760   PMID:32749504  
PMID:32751416   PMID:32762558   PMID:32766788   PMID:32916630   PMID:32982660   PMID:32988972   PMID:33002037   PMID:33031394   PMID:33057110   PMID:33130178   PMID:33175853   PMID:33216625  
PMID:33247858   PMID:33311457   PMID:33333294   PMID:33359740   PMID:33362201   PMID:33432327   PMID:33434240   PMID:33495503   PMID:33497702   PMID:33503262   PMID:33503437   PMID:33556541  
PMID:33574358   PMID:33617542   PMID:33651713   PMID:33734502   PMID:33788896   PMID:33807264   PMID:33822956   PMID:33833239   PMID:33852849   PMID:33979211   PMID:33979214   PMID:33979621  
PMID:34012406   PMID:34017265   PMID:34048282   PMID:34060935   PMID:34068508   PMID:34078594   PMID:34078746   PMID:34083673   PMID:34155298   PMID:34191629   PMID:34209117   PMID:34305639  
PMID:34389686   PMID:34506722   PMID:34549313   PMID:34575944   PMID:34676210   PMID:34680151   PMID:34706731   PMID:34714853   PMID:34764884   PMID:34780665   PMID:34884423   PMID:34893881  
PMID:34986021   PMID:35008897   PMID:35024765   PMID:35033871   PMID:35044859   PMID:35055145   PMID:35098363   PMID:35269540   PMID:35273230   PMID:35302846   PMID:35328671   PMID:35340200  
PMID:35431987  


Genomics

Comparative Map Data
Dmd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X81,858,244 - 84,248,656 (+)NCBIGRCm39mm39
GRCm39 EnsemblX81,992,476 - 84,249,747 (+)Ensembl
GRCm38X82,814,664 - 85,205,050 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX82,948,870 - 85,206,141 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X80,194,209 - 82,450,389 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X79,201,622 - 81,457,760 (+)NCBImm8
CeleraX74,178,103 - 76,399,942 (+)NCBICelera
Cytogenetic MapXC1NCBI
cM MapX38.38NCBI
DMD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X31,119,222 - 33,339,388 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 EnsemblX31,097,677 - 33,339,609 (-)EnsemblGRCh38hg38GRCh38
GRCh37X31,137,339 - 33,357,505 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X31,047,266 - 33,267,647 (-)NCBINCBI36hg18NCBI36
Build 34X30,955,968 - 31,044,681NCBI
CeleraX35,264,860 - 37,484,992 (-)NCBI
Cytogenetic MapXp21.2-p21.1NCBI
HuRefX28,877,768 - 31,095,562 (-)NCBIHuRef
CHM1_1X31,168,731 - 33,388,091 (-)NCBICHM1_1
T2T-CHM13v2.0X30,717,372 - 32,937,500 (-)NCBI
Dmd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X47,272,324 - 49,504,219 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX47,272,331 - 49,504,207 (+)Ensembl
Rnor_6.0X51,149,358 - 53,519,271 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX51,286,737 - 53,519,259 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X51,475,950 - 53,700,033 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X71,501,362 - 71,671,414 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X71,574,653 - 71,744,706 (+)NCBI
CeleraX49,967,398 - 50,127,432 (+)NCBICelera
Cytogenetic MapXq21NCBI
Dmd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555351,283,523 - 3,299,542 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555351,283,084 - 3,297,015 (+)NCBIChiLan1.0ChiLan1.0
DMD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X31,279,878 - 32,974,614 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX31,282,415 - 33,492,733 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X23,728,650 - 26,338,849 (-)NCBIMhudiblu_PPA_v0panPan3
DMD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X26,290,903 - 28,444,635 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX26,290,910 - 28,333,576 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX31,264,482 - 33,330,008 (-)NCBI
ROS_Cfam_1.0X26,319,830 - 28,487,633 (-)NCBI
ROS_Cfam_1.0 EnsemblX26,319,823 - 28,377,504 (-)Ensembl
UMICH_Zoey_3.1X26,365,124 - 28,433,100 (-)NCBI
UNSW_CanFamBas_1.0X26,358,103 - 28,426,635 (-)NCBI
UU_Cfam_GSD_1.0X26,455,978 - 28,540,050 (-)NCBI
Dmd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X19,065,166 - 21,072,605 (-)NCBI
SpeTri2.0NW_0049365537,157,526 - 7,943,703 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DMD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX27,028,223 - 29,181,689 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X27,028,223 - 29,650,728 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X29,663,010 - 29,797,624 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X29,402,260 - 29,549,360 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,958,632 - 31,033,485 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X30,368,459 - 30,440,314 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.2X31,219,126 - 31,875,451 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DMD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X29,543,003 - 32,218,011 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605631,608,900 - 34,272,207 (-)NCBIVero_WHO_p1.0
Dmd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476222,746,729 - 24,847,938 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476222,306,962 - 24,846,427 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH126780  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,565,078 - 84,565,292UniSTSGRCm38
MGSCv37X81,810,417 - 81,810,631UniSTSGRCm37
CeleraX75,758,379 - 75,758,593UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
DXMit8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,202,920 - 85,203,164UniSTSGRCm38
MGSCv37X82,448,259 - 82,448,503UniSTSGRCm37
CeleraX76,397,812 - 76,398,056UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
Whitehead GeneticX24.0UniSTS
DXMit8.3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,203,027 - 85,203,188UniSTSGRCm38
MGSCv37X82,448,366 - 82,448,527UniSTSGRCm37
CeleraX76,397,919 - 76,398,080UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
cM MapX UniSTS
Whitehead GeneticX24.0UniSTS
px-31d5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,034,272 - 85,034,510UniSTSGRCm38
MGSCv37X82,279,611 - 82,279,849UniSTSGRCm37
CeleraX76,229,387 - 76,229,625UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
UniSTS:224881  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,204,327 - 85,204,525UniSTSGRCm38
MGSCv37X82,449,666 - 82,449,864UniSTSGRCm37
CeleraX76,399,219 - 76,399,417UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
UniSTS:224938  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X83,669,587 - 83,669,690UniSTSGRCm38
MGSCv37X80,914,926 - 80,915,029UniSTSGRCm37
CeleraX74,873,843 - 74,873,946UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
UniSTS:225118  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,112,904 - 84,113,054UniSTSGRCm38
GRCm3810114,813,040 - 114,813,230UniSTSGRCm38
MGSCv37X81,358,243 - 81,358,393UniSTSGRCm37
MGSCv3710114,250,096 - 114,250,286UniSTSGRCm37
CeleraX75,317,495 - 75,317,645UniSTS
Celera10116,748,791 - 116,748,981UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-17h8  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X83,023,950 - 83,024,054UniSTSGRCm38
MGSCv37X80,269,289 - 80,269,393UniSTSGRCm37
CeleraX74,252,731 - 74,252,835UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-26g10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,949,528 - 84,949,882UniSTSGRCm38
MGSCv37X82,194,867 - 82,195,221UniSTSGRCm37
CeleraX76,143,310 - 76,143,664UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-31d12  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X83,035,164 - 83,035,299UniSTSGRCm38
MGSCv37X80,280,503 - 80,280,638UniSTSGRCm37
CeleraX74,263,945 - 74,264,080UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-36d2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X83,633,464 - 83,633,567UniSTSGRCm38
MGSCv37X80,878,803 - 80,878,906UniSTSGRCm37
CeleraX74,837,648 - 74,837,751UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-37a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,100,582 - 84,100,885UniSTSGRCm38
MGSCv37X81,345,921 - 81,346,224UniSTSGRCm37
CeleraX75,305,157 - 75,305,460UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-37g10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,960,030 - 84,960,178UniSTSGRCm38
MGSCv37X82,205,369 - 82,205,517UniSTSGRCm37
CeleraX76,153,788 - 76,153,936UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-37h5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,347,929 - 84,348,046UniSTSGRCm38
MGSCv37X81,593,268 - 81,593,385UniSTSGRCm37
CeleraX75,547,231 - 75,547,348UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-38d3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37183,709,949 - 3,710,064UniSTSGRCm37
MGSCv3713109,633,970 - 109,634,085UniSTSGRCm37
Celera13113,165,273 - 113,165,388UniSTS
Celera183,759,305 - 3,759,420UniSTS
CeleraX74,265,230 - 74,265,344UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-38f10  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,838,913 - 84,839,012UniSTSGRCm38
MGSCv37X82,084,252 - 82,084,351UniSTSGRCm37
CeleraX76,032,809 - 76,032,908UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-39e3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,045,820 - 85,045,945UniSTSGRCm38
MGSCv37X82,291,159 - 82,291,284UniSTSGRCm37
CeleraX76,240,911 - 76,241,036UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-3a7  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,620,749 - 84,620,967UniSTSGRCm38
MGSCv37X81,866,088 - 81,866,306UniSTSGRCm37
CeleraX75,814,539 - 75,814,757UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-61b1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X83,182,520 - 83,182,642UniSTSGRCm38
MGSCv37X80,427,859 - 80,427,981UniSTSGRCm37
CeleraX74,409,200 - 74,409,322UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
px-43d3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X83,241,410 - 83,241,525UniSTSGRCm38
MGSCv37X80,486,749 - 80,486,864UniSTSGRCm37
CeleraX74,468,248 - 74,468,363UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
DMD  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,107,588 - 85,107,655UniSTSGRCm38
MGSCv37X82,352,927 - 82,352,994UniSTSGRCm37
CeleraX76,302,221 - 76,302,288UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
PMC108984P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,204,925 - 85,205,009UniSTSGRCm38
MGSCv37X82,450,264 - 82,450,348UniSTSGRCm37
CeleraX76,399,817 - 76,399,901UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
D6S1171E  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381710,210,231 - 10,210,350UniSTSGRCm38
GRCm38X83,125,363 - 83,125,482UniSTSGRCm38
MGSCv37X80,370,702 - 80,370,821UniSTSGRCm37
MGSCv371710,403,096 - 10,403,215UniSTSGRCm37
CeleraX74,352,541 - 74,352,660UniSTS
Celera1710,255,798 - 10,255,917UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic MapXCUniSTS
cM Map175.9UniSTS
cM MapX32.0UniSTS
PMC316713P2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,202,564 - 85,202,758UniSTSGRCm38
MGSCv37X82,447,903 - 82,448,097UniSTSGRCm37
CeleraX76,397,456 - 76,397,650UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS
DXMit242  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X84,889,011 - 84,889,158UniSTSGRCm38
MGSCv37X82,134,350 - 82,134,497UniSTSGRCm37
CeleraX76,082,564 - 76,082,734UniSTS
Cytogenetic MapXCUniSTS
cM MapX31.0UniSTS
DXWox19  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X85,202,904 - 85,203,154UniSTSGRCm38
MGSCv37X82,448,243 - 82,448,493UniSTSGRCm37
CeleraX76,397,796 - 76,398,046UniSTS
Cytogenetic MapXCUniSTS
cM MapX32.0UniSTS


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse
13464140Hdlq108_mHDL QTL 108 (mouse)X5777196091771960Mouse
25314316Mlh1fc3_mMLH1 foci count 3 (mouse)X6134360689843606Mouse
25314318Sccor2_msynaptonemal complex length to mean MLH1 count ratio 2 (mouse)X7054360696543606Mouse
4141665Mhysq2_mmale hybrid sterility QTL 2 (mouse)Not determined71453852139203212Mouse
12879918Shm4_msperm head morphology 4 (mouse)X72072050102062720Mouse
1357500Mdmsc6_mmodifier of muscularity 6 (mouse)Not determinedX75306671109306758Mouse
1302054Gct4_mgranulosa cell tumorigenesis 4 (mouse)Not determinedX76124336102062720Mouse
11075102Modc2_mmodifier of Odc2 (mouse)X80189914114190059Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2661
Count of miRNA genes:777
Interacting mature miRNAs:1050
Transcripts:ENSMUST00000113991, ENSMUST00000113992, ENSMUST00000114000, ENSMUST00000123308, ENSMUST00000127295, ENSMUST00000128983, ENSMUST00000132333, ENSMUST00000139998, ENSMUST00000141261, ENSMUST00000141778, ENSMUST00000146331, ENSMUST00000147740, ENSMUST00000149433, ENSMUST00000156107
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001314034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001314035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001314036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001314037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001314038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007868 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006527773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017318379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030251215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161806 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF095738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH007099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK036936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK044536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK045257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK052856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK075809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK159639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL669900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL731776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL732449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL806515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL806516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL808024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL833800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL929177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY321586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC085236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ558690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX000479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX294443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY675398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR352330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR382328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX200477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FJ795372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JN900253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ480728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ480729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ480730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ480731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX525238 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX525239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX525240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX525241 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX525242 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KX858827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY679207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KY679208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02000345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LXEJ02010712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M18025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M36672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M36674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M68859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S62620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U00789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U15218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U56724 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X57745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X58153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X81596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000113991   ⟹   ENSMUSP00000109624
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX84,092,019 - 84,248,645 (+)Ensembl
GRCm38.p6 EnsemblX85,048,413 - 85,205,039 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113992   ⟹   ENSMUSP00000109625
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX84,092,019 - 84,246,104 (+)Ensembl
GRCm38.p6 EnsemblX85,048,413 - 85,202,498 (+)Ensembl
RefSeq Acc Id: ENSMUST00000114000   ⟹   ENSMUSP00000109633
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX81,992,509 - 84,249,747 (+)Ensembl
GRCm38.p6 EnsemblX82,948,903 - 85,206,141 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123308
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX84,221,542 - 84,246,443 (+)Ensembl
GRCm38.p6 EnsemblX85,177,936 - 85,202,837 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127295
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX81,992,476 - 82,536,345 (+)Ensembl
GRCm38.p6 EnsemblX82,948,870 - 83,492,739 (+)Ensembl
RefSeq Acc Id: ENSMUST00000128983
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX84,091,901 - 84,099,203 (+)Ensembl
GRCm38.p6 EnsemblX85,048,295 - 85,055,597 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132333
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX84,091,925 - 84,184,342 (+)Ensembl
GRCm38.p6 EnsemblX85,048,319 - 85,140,736 (+)Ensembl
RefSeq Acc Id: ENSMUST00000139998
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX83,120,255 - 83,353,500 (+)Ensembl
GRCm38.p6 EnsemblX84,076,649 - 84,309,894 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141261
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX82,971,506 - 82,972,507 (+)Ensembl
GRCm38.p6 EnsemblX83,927,900 - 83,928,901 (+)Ensembl
RefSeq Acc Id: ENSMUST00000146331
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX83,642,807 - 84,188,019 (+)Ensembl
GRCm38.p6 EnsemblX84,599,201 - 85,144,413 (+)Ensembl
RefSeq Acc Id: ENSMUST00000147740
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX82,087,008 - 82,773,937 (+)Ensembl
GRCm38.p6 EnsemblX83,043,402 - 83,730,331 (+)Ensembl
RefSeq Acc Id: ENSMUST00000149433
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX84,091,928 - 84,188,017 (+)Ensembl
GRCm38.p6 EnsemblX85,048,322 - 85,144,411 (+)Ensembl
RefSeq Acc Id: ENSMUST00000156107
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX83,816,317 - 84,019,313 (+)Ensembl
GRCm38.p6 EnsemblX84,772,711 - 84,975,707 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239019   ⟹   ENSMUSP00000158938
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX84,091,925 - 84,248,654 (+)Ensembl
GRCm38.p6 EnsemblX85,048,319 - 85,205,048 (+)Ensembl
RefSeq Acc Id: ENSMUST00000239269   ⟹   ENSMUSP00000159246
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX82,899,013 - 84,249,747 (+)Ensembl
GRCm38.p6 EnsemblX83,855,407 - 85,206,141 (+)Ensembl
RefSeq Acc Id: NM_001314034   ⟹   NP_001300963
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X84,091,901 - 84,248,656 (+)NCBI
GRCm38X85,048,295 - 85,205,050 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001314035   ⟹   NP_001300964
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X84,091,901 - 84,248,656 (+)NCBI
GRCm38X85,048,295 - 85,205,050 (+)NCBI
Sequence: