Ctsh (cathepsin H) - Rat Genome Database
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Gene: Ctsh (cathepsin H) Mus musculus
Analyze
Symbol: Ctsh
Name: cathepsin H
RGD ID: 10423
MGI Page MGI
Description: Is expressed in genitourinary system and upper jaw incisor. Orthologous to human CTSH (cathepsin H).
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: AL022844; Cat H; cathepsin B3; cathepsin BA; pro-cathepsin H
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Ctsh-ps   Gm5398  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39989,936,320 - 89,958,148 (+)NCBIGRCm39mm39
GRCm39 Ensembl989,936,205 - 89,958,142 (+)Ensembl
GRCm38990,054,267 - 90,076,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl990,054,152 - 90,076,089 (+)EnsemblGRCm38mm10GRCm38
MGSCv37989,949,105 - 89,970,933 (+)NCBIGRCm37mm9NCBIm37
MGSCv36989,852,402 - 89,873,982 (+)NCBImm8
Celera989,669,599 - 89,691,657 (+)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.4NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(S)-nicotine  (ISO)
1,2,4-trimethylbenzene  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dinitrotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3'-amino-3'-deoxy-N(6),N(6)-dimethyladenosine  (ISO)
3,3',4,4'-tetrachlorobiphenyl  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxyphenyl retinamide  (EXP)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
afimoxifene  (ISO)
aflatoxin B1  (EXP)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[b]fluoranthene  (EXP)
bexarotene  (ISO)
bilirubin IXalpha  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
butan-1-ol  (ISO)
butanal  (ISO)
cadmium atom  (EXP)
cadmium dichloride  (EXP)
carbamazepine  (ISO)
carbon nanotube  (EXP)
cisplatin  (EXP,ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (EXP)
cyclophosphamide  (ISO)
cyclosporin A  (EXP,ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
diethylstilbestrol  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (ISO)
fipronil  (ISO)
flutamide  (ISO)
fulvestrant  (ISO)
genistein  (EXP)
gentamycin  (ISO)
glyphosate  (ISO)
indometacin  (ISO)
lead diacetate  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
N-nitrosodimethylamine  (ISO)
nefazodone  (ISO)
nicotine  (ISO)
nimesulide  (ISO)
ozone  (EXP)
paracetamol  (EXP,ISO)
paraquat  (EXP)
pentanal  (ISO)
phorbol 13-acetate 12-myristate  (EXP)
progesterone  (ISO)
propanal  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (EXP)
succimer  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP)
tetrachloromethane  (EXP,ISO)
tetradecane  (ISO)
titanium dioxide  (EXP)
triclosan  (ISO)
tris(2-butoxyethyl) phosphate  (ISO)
troglitazone  (EXP)
valproic acid  (ISO)
vinclozolin  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:7671812   PMID:7722423   PMID:9096102   PMID:9119363   PMID:9441766   PMID:9457684   PMID:9722956   PMID:10349636   PMID:10395917   PMID:10922068   PMID:11042159   PMID:11076861  
PMID:11245989   PMID:11752298   PMID:12477932   PMID:12775715   PMID:14766755   PMID:16141072   PMID:16141073   PMID:16602821   PMID:17500053   PMID:18287559   PMID:18346943   PMID:20435891  
PMID:20487000   PMID:20731543   PMID:21217776   PMID:21677750   PMID:21873635   PMID:22022579   PMID:22582844   PMID:23830514   PMID:24058167   PMID:24499815   PMID:24982147   PMID:25738962  
PMID:27477282   PMID:27626662   PMID:29470604   PMID:32325033  


Genomics

Comparative Map Data
Ctsh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39989,936,320 - 89,958,148 (+)NCBIGRCm39mm39
GRCm39 Ensembl989,936,205 - 89,958,142 (+)Ensembl
GRCm38990,054,267 - 90,076,095 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl990,054,152 - 90,076,089 (+)EnsemblGRCm38mm10GRCm38
MGSCv37989,949,105 - 89,970,933 (+)NCBIGRCm37mm9NCBIm37
MGSCv36989,852,402 - 89,873,982 (+)NCBImm8
Celera989,669,599 - 89,691,657 (+)NCBICelera
Cytogenetic Map9E3.1NCBI
cM Map947.4NCBI
CTSH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1578,921,058 - 78,949,574 (-)EnsemblGRCh38hg38GRCh38
GRCh381578,921,058 - 78,945,089 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371579,213,400 - 79,237,388 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361577,001,147 - 77,024,475 (-)NCBINCBI36hg18NCBI36
Build 341577,001,162 - 77,024,475NCBI
Celera1556,150,437 - 56,173,763 (-)NCBI
Cytogenetic Map15q25.1NCBI
HuRef1555,974,005 - 55,997,318 (-)NCBIHuRef
CHM1_11579,332,284 - 79,355,647 (-)NCBICHM1_1
Ctsh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2890,608,941 - 90,627,824 (+)NCBI
Rnor_6.0 Ensembl897,439,161 - 97,458,287 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0897,439,155 - 97,458,293 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0896,939,702 - 96,958,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4894,971,689 - 94,990,434 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1894,991,143 - 95,009,889 (+)NCBI
Celera890,152,207 - 90,170,963 (+)NCBICelera
Cytogenetic Map8q31NCBI
Ctsh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495553339,284 - 54,837 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495553339,237 - 54,881 (-)NCBIChiLan1.0ChiLan1.0
CTSH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11576,853,433 - 76,876,976 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1576,852,668 - 76,876,976 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01557,893,379 - 57,917,194 (-)NCBIMhudiblu_PPA_v0panPan3
CTSH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl358,103,291 - 58,113,718 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1358,103,284 - 58,113,958 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Ctsh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_00493647137,135,200 - 37,156,081 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTSH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl748,083,569 - 48,106,041 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1748,084,882 - 48,106,072 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2753,623,062 - 53,644,262 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CTSH
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1264,451,731 - 4,473,220 (+)NCBI
ChlSab1.1 Ensembl264,451,774 - 4,472,855 (+)Ensembl
Ctsh
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462494182,209 - 98,156 (-)NCBI

Position Markers
U06119  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38990,075,774 - 90,075,900UniSTSGRCm38
MGSCv37989,970,612 - 89,970,738UniSTSGRCm37
Celera989,691,336 - 89,691,462UniSTS
Cytogenetic Map9E3.1UniSTS
Whitehead/MRC_RH9960.93UniSTS
RH127737  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38990,074,919 - 90,075,813UniSTSGRCm38
MGSCv37989,969,757 - 89,970,651UniSTSGRCm37
Celera989,690,481 - 89,691,375UniSTS
Cytogenetic Map9E3.1UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93739490198819654Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49541121101528921Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95212317899910428Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95653182690531973Mouse
1301172Fembrs6_mfemur breaking strength 6 (mouse)Not determined95911710593117252Mouse
1301803Stheal9_msoft tissue heal 9 (mouse)Not determined95911710593117252Mouse
5491195Mobq8_mmultigenic obesity QTL 8 (mouse)Not determined95946266493462846Mouse
1300848Skull13_mskull morphology 13 (mouse)Not determined95946266493462846Mouse
1301456Adip5_madiposity 5 (mouse)Not determined95946266493462846Mouse
13207569Tcq13_mtotal cholesterol QTL 13 (mouse)959990000109260000Mouse
1301611Lrnx3_mlearning contextual 3 (mouse)Not determined96224248596242599Mouse
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63332429120362868Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63332429120362868Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963332429120362868Mouse
11081165Psl6_mpromotion susceptibility QTL 6 (mouse)96513390995640755Mouse
1301636Lith5_mlithogenic gene 5 (mouse)Not determined966207024100207122Mouse
10045638Heal29_mwound healing/regeneration 29 (mouse)Not determined967124167101124167Mouse
1357610Vtbt8_mvertebral trabecular bone trait 8 (mouse)Not determined968897510102897652Mouse
1301924Bmd10_mbone mineral density 10 (mouse)Not determined968897510102897652Mouse
1301302Pas4_mpulmonary adenoma susceptibility 4 (mouse)Not determined969239845103239920Mouse
10412174Habiir4_mhyperoxic acute lung injury imprinted region 4 (mouse)Not determined96936046598819654Mouse
1301621Hpic1_mhaloperidol-induced catalepsy 1 (mouse)Not determined969546513103546645Mouse
1301573Etohcta8_methanol conditioned taste aversion 8 (mouse)Not determined972977005106977152Mouse
10054068El8_mepilepsy 8 (mouse)Not determined972977005106977152Mouse
1301725Lifespan1_mlife span 1 (mouse)Not determined974368177108368325Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975775364114474379Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975775364114474379Mouse
1301869Tbbmd4_mtotal body bone mineral density 4 (mouse)Not determined976117105101528921Mouse
1301407Rapop2_mradiation-induced apoptosis 2 (mouse)Not determined976535936110536130Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978640645112640755Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979397810113397888Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981798268115798392Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982910333116910428Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982910333116910428Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982910333116910428Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984528818118528921Mouse
10412180Msam3_mmuscle, skeletal, activity measure 3 (mouse)Not determined985897510108641186Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986230401120230530Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986239845120289624Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986748483120748483Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987800000121800000Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989284925123284925Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989412277123412396Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989563342123563342Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989977005118938021Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1187
Count of miRNA genes:597
Interacting mature miRNAs:730
Transcripts:ENSMUST00000034915, ENSMUST00000123320, ENSMUST00000127842, ENSMUST00000132718, ENSMUST00000142750, ENSMUST00000143172, ENSMUST00000151219
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001312649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_007801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011242660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK149949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK151877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC080767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BG078538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX629896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV043764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U06119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Y18464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034915   ⟹   ENSMUSP00000034915
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,267 - 90,076,089 (+)Ensembl
RefSeq Acc Id: ENSMUST00000123320   ⟹   ENSMUSP00000122108
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,538 - 90,076,087 (+)Ensembl
RefSeq Acc Id: ENSMUST00000127842
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,506 - 90,076,087 (+)Ensembl
RefSeq Acc Id: ENSMUST00000132718   ⟹   ENSMUSP00000117599
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,152 - 90,065,422 (+)Ensembl
RefSeq Acc Id: ENSMUST00000142750
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,062,522 - 90,071,885 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143172   ⟹   ENSMUSP00000114427
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,537 - 90,064,239 (+)Ensembl
RefSeq Acc Id: ENSMUST00000151219
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,071,696 - 90,075,749 (+)Ensembl
RefSeq Acc Id: ENSMUST00000185459   ⟹   ENSMUSP00000140437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,559 - 90,075,741 (+)Ensembl
RefSeq Acc Id: ENSMUST00000186126
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,521 - 90,055,338 (+)Ensembl
RefSeq Acc Id: ENSMUST00000187437
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,060,153 - 90,061,623 (+)Ensembl
RefSeq Acc Id: ENSMUST00000190338
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl990,054,554 - 90,067,344 (+)Ensembl
RefSeq Acc Id: NM_001312649   ⟹   NP_001299578
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39989,936,320 - 89,958,148 (+)NCBI
GRCm38990,054,267 - 90,076,095 (+)NCBI
Sequence:
RefSeq Acc Id: NM_007801   ⟹   NP_031827
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39989,936,320 - 89,958,148 (+)NCBI
GRCm38990,054,267 - 90,076,095 (+)ENTREZGENE
MGSCv37989,949,105 - 89,970,933 (+)RGD
Celera989,669,599 - 89,691,657 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_011242660   ⟹   XP_011240962
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39989,936,353 - 89,951,009 (+)NCBI
GRCm38990,054,300 - 90,068,956 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_031827   ⟸   NM_007801
- Peptide Label: isoform 1 preproprotein
- UniProtKB: P49935 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011240962   ⟸   XM_011242660
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001299578   ⟸   NM_001312649
- Peptide Label: isoform 2
- UniProtKB: P49935 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000114427   ⟸   ENSMUST00000143172
RefSeq Acc Id: ENSMUSP00000117599   ⟸   ENSMUST00000132718
RefSeq Acc Id: ENSMUSP00000034915   ⟸   ENSMUST00000034915
RefSeq Acc Id: ENSMUSP00000140437   ⟸   ENSMUST00000185459
RefSeq Acc Id: ENSMUSP00000122108   ⟸   ENSMUST00000123320
Protein Domains
Inhibitor_I29   Pept_C1

Promoters
RGD ID:6844375
Promoter ID:MM_KWN:58341
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_007801,   OTTMUST00000059830,   OTTMUST00000059832,   OTTMUST00000059833,   UC009QZU.1,   UC009QZV.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36989,949,151 - 89,949,651 (+)MPROMDB
RGD ID:6844374
Promoter ID:MM_KWN:58342
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver,   Lung,   Spleen
Transcripts:OTTMUST00000059834
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36989,956,626 - 89,957,126 (+)MPROMDB
RGD ID:6844376
Promoter ID:MM_KWN:58343
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000059835
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36989,965,786 - 89,966,387 (+)MPROMDB
RGD ID:6848399
Promoter ID:MM_ACW:51556
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Liver,   Lung
Transcripts:CTSH.QSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36989,970,359 - 89,970,859 (+)MPROMDB
RGD ID:8670424
Promoter ID:EPDNEW_M13243
Type:initiation region
Name:Ctsh_1
Description:Mus musculus cathepsin H , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38990,054,537 - 90,054,597EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:107285 AgrOrtholog
Ensembl Genes ENSMUSG00000032359 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000034915 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUSP00000114427 UniProtKB/TrEMBL
  ENSMUSP00000117599 UniProtKB/TrEMBL
  ENSMUSP00000122108 UniProtKB/TrEMBL
  ENSMUSP00000140437 UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000034915 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSMUST00000123320 UniProtKB/TrEMBL
  ENSMUST00000132718 UniProtKB/TrEMBL
  ENSMUST00000143172 UniProtKB/TrEMBL
  ENSMUST00000185459 UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_asp_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_cys_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_his_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C1A_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C1A_papain-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Prot_inhib_I29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:13036 UniProtKB/Swiss-Prot
MGD MGI:107285 ENTREZGENE
NCBI Gene 13036 ENTREZGENE
Pfam Inhibitor_I29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_C1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ctsh PhenoGen
PRINTS PAPAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE THIOL_PROTEASE_ASN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THIOL_PROTEASE_CYS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  THIOL_PROTEASE_HIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART Inhibitor_I29 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Pept_C1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WR20_MOUSE UniProtKB/TrEMBL
  CATH_MOUSE UniProtKB/Swiss-Prot
  D3YVI3_MOUSE UniProtKB/TrEMBL
  D3Z437_MOUSE UniProtKB/TrEMBL
  D7UEQ9_MOUSE UniProtKB/TrEMBL
  P49935 ENTREZGENE
  Q922Q7_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q3UCD6 UniProtKB/Swiss-Prot