RNU1-43P (RNA, U1 small nuclear 43, pseudogene) - Rat Genome Database

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Gene: RNU1-43P (RNA, U1 small nuclear 43, pseudogene) Homo sapiens
Analyze
Symbol: RNU1-43P
Name: RNA, U1 small nuclear 43, pseudogene
RGD ID: 10413766
HGNC Page HGNC:48385
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Alliance Genes
More Info more info ...
Related Functional Gene: RNU1-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383103,159,960 - 103,160,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3103,159,960 - 103,160,124 (+)EnsemblGRCh38hg38GRCh38
GRCh373102,878,804 - 102,878,968 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q13.11NCBI
CHM1_13102,841,895 - 102,842,059 (+)NCBICHM1_1
T2T-CHM13v2.03105,876,820 - 105,876,984 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU1-43P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383103,159,960 - 103,160,124 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3103,159,960 - 103,160,124 (+)EnsemblGRCh38hg38GRCh38
GRCh373102,878,804 - 102,878,968 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map3q13.11NCBI
CHM1_13102,841,895 - 102,842,059 (+)NCBICHM1_1
T2T-CHM13v2.03105,876,820 - 105,876,984 (+)NCBIT2T-CHM13v2.0
Gm24200
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39994,166,549 - 94,166,705 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl994,166,549 - 94,166,705 (+)EnsemblGRCm39 Ensembl
GRCm38994,284,496 - 94,284,652 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl994,284,496 - 94,284,652 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map9E3.3NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:27
Count of miRNA genes:26
Interacting mature miRNAs:26
Transcripts:ENST00000365052
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage pharyngeal arch
High
Medium
Low 6 6 8 2 4 3 3 30 2 11 47 4 1 2
Below cutoff 5 23 45 4 6 2 5 4 43 5 15 101 3 1 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000365052
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3103,159,960 - 103,160,124 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU1-43P COSMIC
Ensembl Genes ENSG00000201922 Ensembl, ENTREZGENE
GTEx ENSG00000201922 GTEx
HGNC ID HGNC:48385 ENTREZGENE
Human Proteome Map RNU1-43P Human Proteome Map
NCBI Gene RNU1-43P ENTREZGENE