VDAC2P3 (VDAC2 pseudogene 3) - Rat Genome Database

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Gene: VDAC2P3 (VDAC2 pseudogene 3) Homo sapiens
Analyze
Symbol: VDAC2P3
Name: VDAC2 pseudogene 3
RGD ID: 10402287
HGNC Page HGNC:51931
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: voltage dependent anion channel 2 pseudogene 3
Related Functional Gene: VDAC2  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381117,640,340 - 117,641,727 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1117,640,812 - 117,641,639 (-)EnsemblGRCh38hg38GRCh38
GRCh371118,182,962 - 118,184,349 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361117,984,957 - 117,985,817 (-)NCBINCBI36Build 36hg18NCBI36
Celera1116,410,621 - 116,412,085 (-)NCBICelera
Cytogenetic Map1p12NCBI
HuRef1116,039,666 - 116,041,127 (-)NCBIHuRef
CHM1_11118,297,977 - 118,299,441 (-)NCBICHM1_1
T2T-CHM13v2.01117,649,547 - 117,650,934 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:10049775  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:120
Count of miRNA genes:119
Interacting mature miRNAs:120
Transcripts:ENST00000430995
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 8 1 1
Low 49 67 12 15 281 1 1 3 56 344 41 14 14
Below cutoff 819 905 445 214 770 95 910 451 345 122 300 602 119 322 632

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000430995
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1117,640,812 - 117,641,639 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC VDAC2P3 COSMIC
Ensembl Genes ENSG00000213262 Ensembl
GTEx ENSG00000213262 GTEx
HGNC ID HGNC:51931 ENTREZGENE
Human Proteome Map VDAC2P3 Human Proteome Map
NCBI Gene VDAC2P3 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-01-14 VDAC2P3  VDAC2 pseudogene 3  VDAC2P3  voltage dependent anion channel 2 pseudogene 3  Symbol and/or name change 5135510 APPROVED
2016-01-19 VDAC2P3  voltage dependent anion channel 2 pseudogene 3    voltage-dependent anion channel 2 pseudogene 3  Symbol and/or name change 5135510 APPROVED