SCARNA26A (small Cajal body-specific RNA 26A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: SCARNA26A (small Cajal body-specific RNA 26A) Homo sapiens
Analyze
Symbol: SCARNA26A
Name: small Cajal body-specific RNA 26A
RGD ID: 10401713
HGNC Page HGNC:50385
Description:
Type: ncrna
RefSeq Status: VALIDATED
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381155,679,108 - 155,679,255 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371155,648,899 - 155,649,046 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q22NCBI
CHM1_11157,044,334 - 157,044,481 (-)NCBICHM1_1
T2T-CHM13v2.01154,817,673 - 154,817,820 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:25514182  


Genomics


Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q21.3-23.1(chr1:154566501-157624084)x3 copy number gain See cases [RCV000139902] Chr1:154566501..157624084 [GRCh38]
Chr1:154538977..157593874 [GRCh37]
Chr1:152805601..155860498 [NCBI36]
Chr1:1q21.3-23.1		 pathogenic
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2		 pathogenic
GRCh38/hg38 1q22(chr1:155182457-155787428)x3 copy number gain See cases [RCV000051164] Chr1:155182457..155787428 [GRCh38]
Chr1:155154933..155757219 [GRCh37]
Chr1:153421557..154023843 [NCBI36]
Chr1:1q22		 uncertain significance
GRCh38/hg38 1q22(chr1:155648847-155715659)x3 copy number gain See cases [RCV000135203] Chr1:155648847..155715659 [GRCh38]
Chr1:155618638..155685450 [GRCh37]
Chr1:153885262..153952074 [NCBI36]
Chr1:1q22		 likely benign

Expression


Sequence


Reference Sequences
RefSeq Acc Id: NR_132762
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381155,679,108 - 155,679,255 (-)NCBI
CHM1_11157,044,334 - 157,044,481 (-)NCBI
T2T-CHM13v2.01154,817,673 - 154,817,820 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC SCARNA26A COSMIC
GTEx SCARNA26A GTEx
HGNC ID HGNC:50385 ENTREZGENE
Human Proteome Map SCARNA26A Human Proteome Map
NCBI Gene SCARNA26A ENTREZGENE
RNAcentral URS00008E3A3C RNACentral