BNIP3P37 (BCL2 interacting protein 3 pseudogene 37) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: BNIP3P37 (BCL2 interacting protein 3 pseudogene 37) Homo sapiens
Analyze
Symbol: BNIP3P37
Name: BCL2 interacting protein 3 pseudogene 37
RGD ID: 10400718
HGNC Page HGNC:49717
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 37
Related Functional Gene: BNIP3  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381923,123,188 - 23,124,088 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1923,123,188 - 23,124,088 (-)EnsemblGRCh38hg38GRCh38
GRCh371923,305,990 - 23,306,890 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map19p12NCBI
CHM1_11923,305,631 - 23,306,539 (-)NCBICHM1_1
T2T-CHM13v2.01923,258,304 - 23,259,212 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:72
Interacting mature miRNAs:73
Transcripts:ENST00000604107
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 14 6 15 3 103 3 102 13 37 40 50 64 1 2 1
Below cutoff 352 307 340 93 420 73 578 199 657 128 646 479 30 128 255 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000604107
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1923,123,188 - 23,124,088 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC BNIP3P37 COSMIC
Ensembl Genes ENSG00000270479 Ensembl, ENTREZGENE
GTEx ENSG00000270479 GTEx
HGNC ID HGNC:49717 ENTREZGENE
Human Proteome Map BNIP3P37 Human Proteome Map
NCBI Gene BNIP3P37 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-28 BNIP3P37  BCL2 interacting protein 3 pseudogene 37    BCL2/adenovirus E1B 19kDa interacting protein 3 pseudogene 37  Symbol and/or name change 5135510 APPROVED