RNU6-99P (RNA, U6 small nuclear 99, pseudogene) - Rat Genome Database

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Gene: RNU6-99P (RNA, U6 small nuclear 99, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-99P
Name: RNA, U6 small nuclear 99, pseudogene
RGD ID: 10400714
HGNC Page HGNC:47062
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Genes
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381139,261,107 - 39,261,213 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1139,261,107 - 39,261,213 (+)EnsemblGRCh38hg38GRCh38
GRCh371139,282,657 - 39,282,763 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11p12NCBI
CHM1_11139,281,725 - 39,281,831 (+)NCBICHM1_1
T2T-CHM13v2.01139,407,689 - 39,407,795 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-99P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381139,261,107 - 39,261,213 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1139,261,107 - 39,261,213 (+)EnsemblGRCh38hg38GRCh38
GRCh371139,282,657 - 39,282,763 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map11p12NCBI
CHM1_11139,281,725 - 39,281,831 (+)NCBICHM1_1
T2T-CHM13v2.01139,407,689 - 39,407,795 (+)NCBIT2T-CHM13v2.0
Gm22381
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,646,863 - 73,646,969 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,646,863 - 73,646,969 (+)EnsemblGRCm39 Ensembl
GRCm381173,756,037 - 73,756,143 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1173,756,037 - 73,756,143 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map11B4NCBI
LOC120097317
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81583,960,470 - 83,960,566 (-)NCBIGRCr8
mRatBN7.21577,552,665 - 77,552,761 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1577,552,665 - 77,552,761 (-)NCBImRatBN7.2 Ensembl
mRatBN7.2 Ensembl1577,552,665 - 77,552,761 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1585,236,646 - 85,236,721 (-)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map15q21NCBI
LOC119871669
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha442,387,179 - 42,387,285 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0442,847,123 - 42,847,229 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl442,847,123 - 42,847,229 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1442,622,092 - 42,622,198 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0442,814,951 - 42,815,057 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0443,320,409 - 43,320,515 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:73
Count of miRNA genes:72
Interacting mature miRNAs:72
Transcripts:ENST00000364721
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system reproductive system respiratory system
High
Medium
Low 2 1 2 2 1
Below cutoff 1 1 1 2 1 2 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000364721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1139,261,107 - 39,261,213 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-99P COSMIC
Ensembl Genes ENSG00000201591 Ensembl, ENTREZGENE
GTEx ENSG00000201591 GTEx
HGNC ID HGNC:47062 ENTREZGENE
Human Proteome Map RNU6-99P Human Proteome Map
NCBI Gene RNU6-99P ENTREZGENE