HSPE1P6 (heat shock protein family E (Hsp10) member 1 pseudogene 6) - Rat Genome Database

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Gene: HSPE1P6 (heat shock protein family E (Hsp10) member 1 pseudogene 6) Homo sapiens
Analyze
Symbol: HSPE1P6
Name: heat shock protein family E (Hsp10) member 1 pseudogene 6
RGD ID: 10400592
HGNC Page HGNC:49325
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: HSPE1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381203,903,601 - 203,904,061 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1203,903,723 - 203,904,013 (-)EnsemblGRCh38hg38GRCh38
GRCh371203,872,729 - 203,873,189 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map1q32.1NCBI
CHM1_11205,296,372 - 205,296,662 (-)NCBICHM1_1
T2T-CHM13v2.01203,167,557 - 203,168,017 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:66
Interacting mature miRNAs:66
Transcripts:ENST00000479457, ENST00000540496
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1
Low 66 31 171 66 65 64 127 19 69 49 139 119 2 35 42
Below cutoff 704 769 595 208 268 159 1125 655 1296 129 480 448 54 361 731 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000479457
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1203,903,723 - 203,904,013 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC HSPE1P6 COSMIC
Ensembl Genes ENSG00000232917 Ensembl
GTEx ENSG00000232917 GTEx
HGNC ID HGNC:49325 ENTREZGENE
Human Proteome Map HSPE1P6 Human Proteome Map
NCBI Gene HSPE1P6 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 HSPE1P6  heat shock protein family E (Hsp10) member 1 pseudogene 6    heat shock 10kDa protein 1 pseudogene 6  Symbol and/or name change 5135510 APPROVED