Gene: RNU6-258P (RNA, U6 small nuclear 258, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU6-258P |
Name: |
RNA, U6 small nuclear 258, pseudogene |
RGD ID: |
10400146 |
HGNC Page |
HGNC:47221 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU6-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 20,126,388 - 20,126,488 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 20,126,388 - 20,126,488 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 20,029,701 - 20,029,801 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 17 | p11.2 | NCBI | | | | | CHM1_1 | 17 | 20,038,450 - 20,038,550 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 20,075,060 - 20,075,160 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU6-258P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 17 | 20,126,388 - 20,126,488 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 17 | 20,126,388 - 20,126,488 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 17 | 20,029,701 - 20,029,801 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 17 | p11.2 | NCBI | | | | | CHM1_1 | 17 | 20,038,450 - 20,038,550 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 17 | 20,075,060 - 20,075,160 (-) | NCBI | | T2T-CHM13v2.0 | | |
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LOC119869482 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 15 | 51,429,288 - 51,429,388 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 15 | 51,769,512 - 51,769,612 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 15 | 51,769,512 - 51,769,612 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 15 | 51,025,381 - 51,025,481 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 15 | 51,130,401 - 51,130,501 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 15 | 51,442,387 - 51,442,487 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 76 | Count of miRNA genes: | 66 | Interacting mature miRNAs: | 66 | Transcripts: | ENST00000390884 | Prediction methods: | Microtar, Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
High |
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Medium |
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Low |
9
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22
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9
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3
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24
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3
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30
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5
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35
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3
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25
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14
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11
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15
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Below cutoff |
19
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36
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13
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3
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13
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2
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43
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19
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94
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3
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36
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7
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1
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23
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24
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Sequence
RefSeq Acc Id: |
ENST00000390884 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 17 | 20,126,388 - 20,126,488 (-) | Ensembl |
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Additional Information
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