Gene: RNU6-154P (RNA, U6 small nuclear 154, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU6-154P |
Name: |
RNA, U6 small nuclear 154, pseudogene |
RGD ID: |
10399778 |
HGNC Page |
HGNC:47117 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU6-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | X | 116,400,849 - 116,400,953 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 116,400,848 - 116,400,953 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | X | 115,532,009 - 115,532,113 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | X | q23 | NCBI | | | | | CHM1_1 | X | 115,442,908 - 115,443,012 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 114,810,462 - 114,810,566 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU6-154P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | X | 116,400,849 - 116,400,953 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 116,400,848 - 116,400,953 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | X | 115,532,009 - 115,532,113 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | X | q23 | NCBI | | | | | CHM1_1 | X | 115,442,908 - 115,443,012 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 114,810,462 - 114,810,566 (-) | NCBI | | T2T-CHM13v2.0 | | |
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LOC119873812 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 10 | 37,986,108 - 37,986,215 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 10 | 38,916,852 - 38,916,959 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 10 | 38,916,852 - 38,916,959 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 10 | 38,641,499 - 38,641,606 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 10 | 38,920,853 - 38,920,960 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 10 | 39,112,701 - 39,112,808 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 91 | Count of miRNA genes: | 88 | Interacting mature miRNAs: | 90 | Transcripts: | ENST00000384306 | Prediction methods: | Miranda, Pita, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
adipose tissue |
appendage |
entire extraembryonic component |
High |
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Medium |
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Low |
19
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1
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4
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2
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7
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2
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5
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2
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1
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1
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11
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40
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1
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1
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1
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Below cutoff |
6
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3
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2
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2
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1
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6
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1
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4
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1
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7
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6
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2
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5
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3
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Sequence
RefSeq Acc Id: |
ENST00000384306 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | X | 116,400,848 - 116,400,953 (-) | Ensembl |
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Additional Information
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